HEADER OXIDOREDUCTASE 05-SEP-14 4UZI TITLE CRYSTAL STRUCTURE OF AAUDYP COMPLEXED WITH IMIDAZOLE CAVEAT 4UZI NAG A 1453 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYE-DECOLORIZING PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DYP-TYPE PEROXIDASE DOMAIN, RESIDUES 64-509; COMPND 5 SYNONYM: AURICULARIA AURICULA-JUDAE DYP-TYPE PEROXIDASE I; COMPND 6 EC: 1.11.1.19; COMPND 7 OTHER_DETAILS: INCLUDING THE TWO PROTEIN CHAINS, THE CO- FACTOR HEME, COMPND 8 CARBOHYDRATE MOLECULES, IMIDAZOLE, HEPES, ACETATE, GLYCOLATE, COMPND 9 OXALATE, FORMATE, 2-METHYL-2,4- PENTANEDIOLE (RACEMIC), TRIS, COMPND 10 POTASSIUM CATIONS AND WATER MOLECULES. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AURICULARIA AURICULA-JUDAE; SOURCE 3 ORGANISM_COMMON: EAR FUNGUS; SOURCE 4 ORGANISM_TAXID: 29892; SOURCE 5 STRAIN: SXM9-C021; SOURCE 6 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM), ACCESS SOURCE 7 NUMBER DSMZ 11326 KEYWDS OXIDOREDUCTASE, PEROXIDASE, DYP-TYPE PEROXIDASE, HEME, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.STRITTMATTER,C.LIERS,R.ULLRICH,M.HOFRICHTER,K.PIONTEK,D.A.PLATTNER REVDAT 5 10-JAN-24 4UZI 1 REMARK REVDAT 4 15-NOV-23 4UZI 1 HETSYN ATOM REVDAT 3 29-JUL-20 4UZI 1 CAVEAT COMPND REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 13-MAY-15 4UZI 1 JRNL REVDAT 1 14-JAN-15 4UZI 0 JRNL AUTH E.STRITTMATTER,K.SERRER,C.LIERS,R.ULLRICH,M.HOFRICHTER, JRNL AUTH 2 K.PIONTEK,E.SCHLEICHER,D.A.PLATTNER JRNL TITL THE TOOLBOX OF AURICULARIA AURICULA-JUDAE DYE-DECOLORIZING JRNL TITL 2 PEROXIDASE - IDENTIFICATION OF THREE NEW POTENTIAL JRNL TITL 3 SUBSTRATE-INTERACTION SITES. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 574 75 2015 JRNL REFN ISSN 0003-9861 JRNL PMID 25542606 JRNL DOI 10.1016/J.ABB.2014.12.016 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 47912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2523 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 363 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7215 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9864 ; 0.763 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 900 ; 7.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;39.072 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 989 ;12.779 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.225 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1117 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5538 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3597 ; 1.581 ; 2.764 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4494 ; 2.246 ; 4.640 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3618 ; 2.153 ; 3.034 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY PROBABLY BOTH REMARK 3 ENANTIOMERS OF MPD OCCUPY THE BINDING SITE OF MPD36D IN VARIOUS REMARK 3 CONFORMATIONS. IN LIGHT OF THE 2.1 A RESOLUTION, ONLY ONE REMARK 3 REPRESENTATIVE (S ENANTIOMER) WAS DEEMED MEANINGFUL. REMARK 4 REMARK 4 4UZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061465. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50456 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AU9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 10% PEG 4000, 100 MM REMARK 280 IMIDAZOLE-HCL PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.85500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 409 OG SER A 419 2.06 REMARK 500 O HOH A 2033 O HOH A 2121 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 285 -13.88 89.09 REMARK 500 ARG A 311 -128.45 49.87 REMARK 500 TRP A 377 -62.09 -107.77 REMARK 500 ASN A 401 53.03 -141.41 REMARK 500 ASN A 415 97.72 -164.19 REMARK 500 THR B 102 -5.24 -58.50 REMARK 500 PHE B 178 -51.76 -124.19 REMARK 500 ARG B 279 -33.53 -131.88 REMARK 500 TYR B 285 -10.16 86.77 REMARK 500 ARG B 311 -126.25 42.52 REMARK 500 TRP B 377 -69.32 -108.66 REMARK 500 ASN B 415 103.54 -167.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 288 GLY A 289 -40.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2063 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1465 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 84 OD1 REMARK 620 2 ASP A 84 OD2 40.6 REMARK 620 3 SER A 367 OG 154.6 158.7 REMARK 620 4 HOH A2075 O 72.6 109.0 92.2 REMARK 620 5 HOH A2271 O 140.6 114.5 61.2 101.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1449 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 304 NE2 REMARK 620 2 HEM A1449 NA 89.7 REMARK 620 3 HEM A1449 NB 89.9 90.0 REMARK 620 4 HEM A1449 NC 90.4 178.8 88.8 REMARK 620 5 HEM A1449 ND 90.7 90.5 179.2 90.6 REMARK 620 6 IMD A1454 N1 168.6 85.8 79.7 93.9 99.7 REMARK 620 7 IMD A1454 N1 171.0 92.9 81.5 86.8 97.8 7.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1465 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 84 OD1 REMARK 620 2 ASP B 84 OD2 41.3 REMARK 620 3 SER B 367 OG 158.3 154.3 REMARK 620 4 HOH B2054 O 77.4 113.5 92.3 REMARK 620 5 HOH B2183 O 126.0 98.6 74.4 100.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B1449 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 304 NE2 REMARK 620 2 HEM B1449 NA 91.4 REMARK 620 3 HEM B1449 NB 91.2 89.5 REMARK 620 4 HEM B1449 NC 88.3 178.6 89.2 REMARK 620 5 HEM B1449 ND 88.7 91.0 179.5 90.3 REMARK 620 6 IMD B1455 N1 179.2 89.3 88.4 91.1 91.7 REMARK 620 7 IMD B1455 N1 161.4 104.3 79.2 75.8 100.7 17.8 REMARK 620 N 1 2 3 4 5 6 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PRECURSOR SEQUENCE IN GENBANK AFJ79723.1 WITH PROLONGED N-TERMINUS. DBREF 4UZI A 3 448 UNP I2DBY1 I2DBY1_9HOMO 64 509 DBREF 4UZI B 3 448 UNP I2DBY1 I2DBY1_9HOMO 64 509 SEQRES 1 A 446 SER LEU ASN THR ASP ASP ILE GLN GLY ASP ILE LEU VAL SEQRES 2 A 446 GLY MET HIS LYS GLN LYS GLN LEU PHE TYR PHE PHE ALA SEQRES 3 A 446 ILE ASN ASP PRO ALA THR PHE LYS THR HIS LEU ALA SER SEQRES 4 A 446 ASP ILE ALA PRO VAL VAL ALA SER VAL THR GLN LEU SER SEQRES 5 A 446 ASN VAL ALA THR GLN PRO LEU VAL ALA LEU ASN ILE ALA SEQRES 6 A 446 PHE SER ASN THR GLY LEU LEU ALA LEU GLY VAL THR ASP SEQRES 7 A 446 ASN LEU GLY ASP SER LEU PHE ALA ASN GLY GLN ALA LYS SEQRES 8 A 446 ASP ALA THR SER PHE LYS GLU SER THR SER SER TRP VAL SEQRES 9 A 446 PRO GLN PHE ALA GLY THR GLY ILE HIS GLY VAL ILE ILE SEQRES 10 A 446 LEU ALA SER ASP THR THR ASP LEU ILE ASP GLN GLN VAL SEQRES 11 A 446 ALA SER ILE GLU SER THR PHE GLY SER SER ILE SER LYS SEQRES 12 A 446 LEU TYR SER LEU SER ALA SER ILE ARG PRO GLY ASN GLU SEQRES 13 A 446 ALA GLY HIS GLU MET PHE GLY PHE LEU ASP GLY ILE ALA SEQRES 14 A 446 GLN PRO ALA ILE ASN GLY PHE ASN THR PRO LEU PRO GLY SEQRES 15 A 446 GLN ASN ILE VAL ASP ALA GLY VAL ILE ILE THR GLY ALA SEQRES 16 A 446 THR ASN ASP PRO ILE THR ARG PRO SER TRP ALA VAL GLY SEQRES 17 A 446 GLY SER PHE LEU ALA PHE ARG GLN LEU GLU GLN LEU VAL SEQRES 18 A 446 PRO GLU PHE ASN LYS TYR LEU LEU ASP ASN ALA PRO ALA SEQRES 19 A 446 GLY SER GLY SER LEU GLN ALA ARG ALA ASP LEU LEU GLY SEQRES 20 A 446 ALA ARG MET VAL GLY ARG TRP LYS SER GLY ALA PRO ILE SEQRES 21 A 446 ASP LEU THR PRO THR ALA ASP ASP PRO ALA LEU GLY ALA SEQRES 22 A 446 ASP ALA GLN ARG ASN ASN ASN PHE THR TYR SER HIS ALA SEQRES 23 A 446 GLY PHE ASP LEU GLY SER ASP GLN SER HIS CYS PRO PHE SEQRES 24 A 446 SER ALA HIS ILE ARG LYS THR ARG PRO ARG ALA ASP LEU SEQRES 25 A 446 GLY GLY SER LEU THR PRO PRO ASN LEU SER ALA GLY ALA SEQRES 26 A 446 ASN SER ILE MET ARG SER GLY ILE PRO TYR GLY PRO GLU SEQRES 27 A 446 VAL THR SER ALA GLU SER ALA SER ASN THR THR THR GLN SEQRES 28 A 446 GLU ARG GLY LEU ALA PHE VAL ALA TYR GLN ALA GLN LEU SEQRES 29 A 446 SER GLN GLY PHE HIS PHE LEU GLN GLN THR TRP ALA ASP SEQRES 30 A 446 ASN ALA ASN PHE PRO PRO GLY LYS THR PRO ALA THR VAL SEQRES 31 A 446 GLY LEU ASP PRO ILE ILE GLY GLN ASN ASN GLY GLN PRO SEQRES 32 A 446 ARG VAL VAL ASN GLY LEU LEU PRO SER ASN SER SER ALA SEQRES 33 A 446 SER LEU SER ILE PRO GLN PHE VAL VAL SER HIS GLY GLY SEQRES 34 A 446 GLU TYR PHE PHE SER PRO PRO ILE SER ALA ILE GLY GLY SEQRES 35 A 446 ARG LEU SER ALA SEQRES 1 B 446 SER LEU ASN THR ASP ASP ILE GLN GLY ASP ILE LEU VAL SEQRES 2 B 446 GLY MET HIS LYS GLN LYS GLN LEU PHE TYR PHE PHE ALA SEQRES 3 B 446 ILE ASN ASP PRO ALA THR PHE LYS THR HIS LEU ALA SER SEQRES 4 B 446 ASP ILE ALA PRO VAL VAL ALA SER VAL THR GLN LEU SER SEQRES 5 B 446 ASN VAL ALA THR GLN PRO LEU VAL ALA LEU ASN ILE ALA SEQRES 6 B 446 PHE SER ASN THR GLY LEU LEU ALA LEU GLY VAL THR ASP SEQRES 7 B 446 ASN LEU GLY ASP SER LEU PHE ALA ASN GLY GLN ALA LYS SEQRES 8 B 446 ASP ALA THR SER PHE LYS GLU SER THR SER SER TRP VAL SEQRES 9 B 446 PRO GLN PHE ALA GLY THR GLY ILE HIS GLY VAL ILE ILE SEQRES 10 B 446 LEU ALA SER ASP THR THR ASP LEU ILE ASP GLN GLN VAL SEQRES 11 B 446 ALA SER ILE GLU SER THR PHE GLY SER SER ILE SER LYS SEQRES 12 B 446 LEU TYR SER LEU SER ALA SER ILE ARG PRO GLY ASN GLU SEQRES 13 B 446 ALA GLY HIS GLU MET PHE GLY PHE LEU ASP GLY ILE ALA SEQRES 14 B 446 GLN PRO ALA ILE ASN GLY PHE ASN THR PRO LEU PRO GLY SEQRES 15 B 446 GLN ASN ILE VAL ASP ALA GLY VAL ILE ILE THR GLY ALA SEQRES 16 B 446 THR ASN ASP PRO ILE THR ARG PRO SER TRP ALA VAL GLY SEQRES 17 B 446 GLY SER PHE LEU ALA PHE ARG GLN LEU GLU GLN LEU VAL SEQRES 18 B 446 PRO GLU PHE ASN LYS TYR LEU LEU ASP ASN ALA PRO ALA SEQRES 19 B 446 GLY SER GLY SER LEU GLN ALA ARG ALA ASP LEU LEU GLY SEQRES 20 B 446 ALA ARG MET VAL GLY ARG TRP LYS SER GLY ALA PRO ILE SEQRES 21 B 446 ASP LEU THR PRO THR ALA ASP ASP PRO ALA LEU GLY ALA SEQRES 22 B 446 ASP ALA GLN ARG ASN ASN ASN PHE THR TYR SER HIS ALA SEQRES 23 B 446 GLY PHE ASP LEU GLY SER ASP GLN SER HIS CYS PRO PHE SEQRES 24 B 446 SER ALA HIS ILE ARG LYS THR ARG PRO ARG ALA ASP LEU SEQRES 25 B 446 GLY GLY SER LEU THR PRO PRO ASN LEU SER ALA GLY ALA SEQRES 26 B 446 ASN SER ILE MET ARG SER GLY ILE PRO TYR GLY PRO GLU SEQRES 27 B 446 VAL THR SER ALA GLU SER ALA SER ASN THR THR THR GLN SEQRES 28 B 446 GLU ARG GLY LEU ALA PHE VAL ALA TYR GLN ALA GLN LEU SEQRES 29 B 446 SER GLN GLY PHE HIS PHE LEU GLN GLN THR TRP ALA ASP SEQRES 30 B 446 ASN ALA ASN PHE PRO PRO GLY LYS THR PRO ALA THR VAL SEQRES 31 B 446 GLY LEU ASP PRO ILE ILE GLY GLN ASN ASN GLY GLN PRO SEQRES 32 B 446 ARG VAL VAL ASN GLY LEU LEU PRO SER ASN SER SER ALA SEQRES 33 B 446 SER LEU SER ILE PRO GLN PHE VAL VAL SER HIS GLY GLY SEQRES 34 B 446 GLU TYR PHE PHE SER PRO PRO ILE SER ALA ILE GLY GLY SEQRES 35 B 446 ARG LEU SER ALA MODRES 4UZI ASN A 282 ASN GLYCOSYLATION SITE MODRES 4UZI ASN A 349 ASN GLYCOSYLATION SITE MODRES 4UZI ASN A 415 ASN GLYCOSYLATION SITE MODRES 4UZI ASN B 282 ASN GLYCOSYLATION SITE MODRES 4UZI ASN B 349 ASN GLYCOSYLATION SITE MODRES 4UZI ASN B 415 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET HEM A1449 43 HET NAG A1452 14 HET NAG A1453 14 HET IMD A1454 10 HET IMD A1455 5 HET MRD A1456 8 HET MPD A1457 8 HET MPD A1458 8 HET FMT A1459 3 HET EPE A1460 30 HET ACT A1461 4 HET ACT A1462 4 HET ACT A1463 4 HET OXD A1464 6 HET K A1465 1 HET HEM B1449 43 HET NAG B1453 14 HET NAG B1454 14 HET IMD B1455 10 HET IMD B1456 5 HET MPD B1457 8 HET MPD B1458 8 HET MPD B1459 8 HET MPD B1460 8 HET MPD B1461 8 HET EPE B1462 30 HET ACT B1463 4 HET ACT B1464 4 HET K B1465 1 HET GOA B1466 5 HET ACT B1467 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM IMD IMIDAZOLE HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM FMT FORMIC ACID HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM ACT ACETATE ION HETNAM OXD OXALIC ACID HETNAM K POTASSIUM ION HETNAM GOA GLYCOLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN EPE HEPES HETSYN GOA HYDROXYACETIC ACID; HYDROXYETHANOIC ACID FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 HEM 2(C34 H32 FE N4 O4) FORMUL 8 IMD 4(C3 H5 N2 1+) FORMUL 10 MRD C6 H14 O2 FORMUL 11 MPD 7(C6 H14 O2) FORMUL 13 FMT C H2 O2 FORMUL 14 EPE 2(C8 H18 N2 O4 S) FORMUL 15 ACT 6(C2 H3 O2 1-) FORMUL 18 OXD C2 H2 O4 FORMUL 19 K 2(K 1+) FORMUL 34 GOA C2 H4 O3 FORMUL 36 HOH *532(H2 O) HELIX 1 1 GLN A 10 VAL A 15 1 6 HELIX 2 2 ASP A 31 ASP A 42 1 12 HELIX 3 3 ILE A 43 VAL A 46 5 4 HELIX 4 4 SER A 49 SER A 54 1 6 HELIX 5 5 SER A 69 LEU A 76 1 8 HELIX 6 6 ASP A 84 GLY A 90 1 7 HELIX 7 7 GLN A 91 LYS A 99 5 9 HELIX 8 8 SER A 101 TRP A 105 5 5 HELIX 9 9 THR A 124 GLY A 140 1 17 HELIX 10 10 PRO A 155 ALA A 159 5 5 HELIX 11 11 ASP A 189 ILE A 193 5 5 HELIX 12 12 PRO A 205 VAL A 209 5 5 HELIX 13 13 LEU A 222 ALA A 234 1 13 HELIX 14 14 SER A 240 GLY A 254 1 15 HELIX 15 15 ASP A 270 ALA A 275 1 6 HELIX 16 16 ALA A 303 ARG A 309 1 7 HELIX 17 17 PRO A 310 GLY A 315 5 6 HELIX 18 18 ALA A 325 SER A 329 5 5 HELIX 19 19 THR A 342 ASN A 349 1 8 HELIX 20 20 GLY A 369 THR A 376 1 8 HELIX 21 21 ILE A 439 GLY A 444 1 6 HELIX 22 22 ARG A 445 ALA A 448 5 4 HELIX 23 23 GLN B 10 VAL B 15 1 6 HELIX 24 24 ASP B 31 ASP B 42 1 12 HELIX 25 25 ILE B 43 VAL B 46 5 4 HELIX 26 26 SER B 49 SER B 54 1 6 HELIX 27 27 SER B 69 LEU B 76 1 8 HELIX 28 28 ASP B 84 GLY B 90 1 7 HELIX 29 29 GLN B 91 LYS B 99 5 9 HELIX 30 30 SER B 101 TRP B 105 5 5 HELIX 31 31 THR B 124 GLY B 140 1 17 HELIX 32 32 PRO B 155 ALA B 159 5 5 HELIX 33 33 ASP B 189 ILE B 193 5 5 HELIX 34 34 PRO B 205 VAL B 209 5 5 HELIX 35 35 LEU B 222 ASN B 233 1 12 HELIX 36 36 SER B 240 GLY B 254 1 15 HELIX 37 37 ASP B 270 ALA B 275 1 6 HELIX 38 38 ALA B 303 ARG B 309 1 7 HELIX 39 39 PRO B 310 GLY B 315 5 6 HELIX 40 40 ALA B 325 SER B 329 5 5 HELIX 41 41 THR B 342 ASN B 349 1 8 HELIX 42 42 GLY B 369 THR B 376 1 8 HELIX 43 43 PRO B 438 GLY B 443 1 6 HELIX 44 44 GLY B 444 ALA B 448 5 5 SHEET 1 AA 4 ALA A 63 PHE A 68 0 SHEET 2 AA 4 GLY A 116 SER A 122 -1 O VAL A 117 N ALA A 67 SHEET 3 AA 4 LYS A 21 ILE A 29 -1 O LYS A 21 N SER A 122 SHEET 4 AA 4 ILE A 143 SER A 152 -1 O SER A 144 N ALA A 28 SHEET 1 AB 2 ALA A 174 ILE A 175 0 SHEET 2 AB 2 ILE A 187 VAL A 188 1 N VAL A 188 O ALA A 174 SHEET 1 AC 2 MET A 331 ARG A 332 0 SHEET 2 AC 2 GLY A 356 GLN A 363 -1 O TYR A 362 N MET A 331 SHEET 1 AD 2 ILE A 335 TYR A 337 0 SHEET 2 AD 2 GLY A 356 GLN A 363 1 O GLY A 356 N TYR A 337 SHEET 1 AE 4 VAL A 426 SER A 436 0 SHEET 2 AE 4 SER A 212 GLN A 221 -1 O SER A 212 N SER A 436 SHEET 3 AE 4 GLY A 356 GLN A 363 -1 O LEU A 357 N LEU A 219 SHEET 4 AE 4 ILE A 335 TYR A 337 1 O ILE A 335 N ALA A 358 SHEET 1 AF 4 VAL A 426 SER A 436 0 SHEET 2 AF 4 SER A 212 GLN A 221 -1 O SER A 212 N SER A 436 SHEET 3 AF 4 GLY A 356 GLN A 363 -1 O LEU A 357 N LEU A 219 SHEET 4 AF 4 MET A 331 ARG A 332 -1 O MET A 331 N TYR A 362 SHEET 1 AG 2 ARG A 406 ASN A 409 0 SHEET 2 AG 2 SER A 419 ILE A 422 -1 O LEU A 420 N VAL A 408 SHEET 1 BA 4 ALA B 63 PHE B 68 0 SHEET 2 BA 4 GLY B 116 SER B 122 -1 O VAL B 117 N ALA B 67 SHEET 3 BA 4 LYS B 21 ILE B 29 -1 O LYS B 21 N SER B 122 SHEET 4 BA 4 ILE B 143 SER B 152 -1 O SER B 144 N ALA B 28 SHEET 1 BB 2 ALA B 174 ILE B 175 0 SHEET 2 BB 2 ILE B 187 VAL B 188 1 N VAL B 188 O ALA B 174 SHEET 1 BC 2 MET B 331 ARG B 332 0 SHEET 2 BC 2 GLY B 356 GLN B 363 -1 O TYR B 362 N MET B 331 SHEET 1 BD 2 ILE B 335 TYR B 337 0 SHEET 2 BD 2 GLY B 356 GLN B 363 1 O GLY B 356 N TYR B 337 SHEET 1 BE 4 VAL B 426 SER B 436 0 SHEET 2 BE 4 SER B 212 GLN B 221 -1 O SER B 212 N SER B 436 SHEET 3 BE 4 GLY B 356 GLN B 363 -1 O LEU B 357 N LEU B 219 SHEET 4 BE 4 ILE B 335 TYR B 337 1 O ILE B 335 N ALA B 358 SHEET 1 BF 4 VAL B 426 SER B 436 0 SHEET 2 BF 4 SER B 212 GLN B 221 -1 O SER B 212 N SER B 436 SHEET 3 BF 4 GLY B 356 GLN B 363 -1 O LEU B 357 N LEU B 219 SHEET 4 BF 4 MET B 331 ARG B 332 -1 O MET B 331 N TYR B 362 SHEET 1 BG 2 ARG B 406 ASN B 409 0 SHEET 2 BG 2 SER B 419 ILE B 422 -1 O LEU B 420 N VAL B 408 LINK ND2 ASN A 282 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 349 C1 NAG A1452 1555 1555 1.44 LINK ND2 ASN A 415 C1 NAG A1453 1555 1555 1.44 LINK ND2 ASN B 282 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN B 349 C1 NAG B1453 1555 1555 1.44 LINK ND2 ASN B 415 C1 NAG B1454 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK OD1 ASP A 84 K K A1465 1555 1555 3.36 LINK OD2 ASP A 84 K K A1465 1555 1555 2.57 LINK NE2 HIS A 304 FE HEM A1449 1555 1555 2.06 LINK OG SER A 367 K K A1465 1555 1555 3.15 LINK FE HEM A1449 N1 AIMD A1454 1555 1555 2.11 LINK FE HEM A1449 N1 BIMD A1454 1555 1555 2.06 LINK K K A1465 O HOH A2075 1555 1555 2.85 LINK K K A1465 O HOH A2271 1555 1555 2.88 LINK OD1 ASP B 84 K K B1465 1555 1555 3.33 LINK OD2 ASP B 84 K K B1465 1555 1555 2.62 LINK NE2 HIS B 304 FE HEM B1449 1555 1555 2.05 LINK OG SER B 367 K K B1465 1555 1555 3.09 LINK FE HEM B1449 N1 BIMD B1455 1555 1555 2.19 LINK FE HEM B1449 N1 AIMD B1455 1555 1555 2.62 LINK K K B1465 O HOH B2054 1555 1555 2.55 LINK K K B1465 O HOH B2183 1555 1555 3.00 CISPEP 1 PRO A 320 PRO A 321 0 8.17 CISPEP 2 PHE A 383 PRO A 384 0 7.66 CISPEP 3 THR A 388 PRO A 389 0 -3.90 CISPEP 4 SER B 238 GLY B 239 0 -4.97 CISPEP 5 ALA B 288 GLY B 289 0 -14.76 CISPEP 6 PRO B 320 PRO B 321 0 4.06 CISPEP 7 PHE B 383 PRO B 384 0 3.19 CISPEP 8 THR B 388 PRO B 389 0 -2.23 CRYST1 67.330 45.710 140.470 90.00 91.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014852 0.000000 0.000417 0.00000 SCALE2 0.000000 0.021877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007122 0.00000