HEADER HYDROLASE 05-SEP-14 4UZJ TITLE STRUCTURE OF THE WNT DEACYLASE NOTUM FROM DROSOPHILA - CRYSTAL FORM I TITLE 2 - 2.4A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOTUM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 82-415,598-617; COMPND 5 SYNONYM: NOTUM PROTEIN, WINGFUL; COMPND 6 EC: 3.1.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GLYCOSYLATED AT N95 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS HYDROLASE, ESTERASE, EXTRACELLULAR, ALPHA/BETA HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ZEBISCH,E.Y.JONES REVDAT 6 23-OCT-24 4UZJ 1 HETSYN REVDAT 5 29-JUL-20 4UZJ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 19-AUG-15 4UZJ 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 3 18-MAR-15 4UZJ 1 JRNL REVDAT 2 04-MAR-15 4UZJ 1 TITLE REVDAT 1 25-FEB-15 4UZJ 0 JRNL AUTH S.KAKUGAWA,P.F.LANGTON,M.ZEBISCH,S.A.HOWELL,T.CHANG,Y.LIU, JRNL AUTH 2 T.FEIZI,G.BINEVA,N.O'REILLY,A.P.SNIJDERS,E.Y.JONES,J.VINCENT JRNL TITL NOTUM DEACYLATES WNT PROTEINS TO SUPPRESS SIGNALLING JRNL TITL 2 ACTIVITY. JRNL REF NATURE V. 519 187 2015 JRNL REFN ISSN 0028-0836 JRNL PMID 25731175 JRNL DOI 10.1038/NATURE14259 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 29879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1030 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -3.79000 REMARK 3 B33 (A**2) : 1.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.401 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.217 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.748 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5659 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5238 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7701 ; 1.494 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12013 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 6.313 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;32.990 ;22.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 906 ;16.448 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;19.030 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 803 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6346 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1412 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2718 ; 2.355 ; 3.646 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2717 ; 2.354 ; 3.645 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3387 ; 3.741 ; 5.461 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2941 ; 3.031 ; 4.014 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 1617 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6478 -31.4975 25.3906 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.4629 REMARK 3 T33: 0.1085 T12: 0.0402 REMARK 3 T13: -0.0914 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.0332 L22: 0.9626 REMARK 3 L33: 1.4697 L12: -0.3561 REMARK 3 L13: 0.1502 L23: -1.1702 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: 0.0504 S13: -0.0237 REMARK 3 S21: -0.2342 S22: -0.0017 S23: -0.0017 REMARK 3 S31: 0.3097 S32: 0.0153 S33: 0.0340 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 617 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8440 7.5378 13.1459 REMARK 3 T TENSOR REMARK 3 T11: 0.1659 T22: 0.5304 REMARK 3 T33: 0.0881 T12: 0.0309 REMARK 3 T13: -0.1043 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.2294 L22: 1.0780 REMARK 3 L33: 0.8019 L12: 1.1094 REMARK 3 L13: 0.4103 L23: -0.3191 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: -0.1709 S13: 0.0217 REMARK 3 S21: -0.0349 S22: 0.0705 S23: 0.0982 REMARK 3 S31: -0.1905 S32: 0.0064 S33: 0.0354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4UZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30929 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M ALCOHOLS, 0.1 M TRIS/BICINE REMARK 280 8.5, 30 % EDO_P8K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.69700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 81 REMARK 465 THR A 82 REMARK 465 GLY A 83 REMARK 465 GLU A 193 REMARK 465 PRO A 194 REMARK 465 ASP A 195 REMARK 465 THR A 196 REMARK 465 SER A 197 REMARK 465 ASP A 198 REMARK 465 ARG A 199 REMARK 465 GLU A 200 REMARK 465 ASN A 201 REMARK 465 GLY A 416 REMARK 465 ASN A 417 REMARK 465 ASN A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 CYS A 598 REMARK 465 GLY A 599 REMARK 465 GLY A 618 REMARK 465 THR A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 HIS A 622 REMARK 465 HIS A 623 REMARK 465 HIS A 624 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 465 GLU B 81 REMARK 465 THR B 82 REMARK 465 GLY B 83 REMARK 465 ASP B 84 REMARK 465 ASP B 195 REMARK 465 THR B 196 REMARK 465 SER B 197 REMARK 465 ASP B 198 REMARK 465 ARG B 199 REMARK 465 GLU B 200 REMARK 465 ASN B 201 REMARK 465 SER B 202 REMARK 465 GLY B 416 REMARK 465 ASN B 417 REMARK 465 ASN B 418 REMARK 465 ASN B 419 REMARK 465 GLY B 420 REMARK 465 CYS B 598 REMARK 465 GLY B 599 REMARK 465 THR B 617 REMARK 465 GLY B 618 REMARK 465 THR B 619 REMARK 465 HIS B 620 REMARK 465 HIS B 621 REMARK 465 HIS B 622 REMARK 465 HIS B 623 REMARK 465 HIS B 624 REMARK 465 HIS B 625 REMARK 465 HIS B 626 REMARK 465 HIS B 627 REMARK 465 HIS B 628 REMARK 465 HIS B 629 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 202 OG REMARK 470 LEU A 600 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 155 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 155 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 265 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 265 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 127 -136.34 -121.21 REMARK 500 LEU A 142 51.82 -171.99 REMARK 500 ASN A 173 32.92 -99.49 REMARK 500 SER A 237 -110.29 52.13 REMARK 500 ASN A 256 -62.87 -100.91 REMARK 500 SER A 286 -58.92 -29.40 REMARK 500 TRP A 314 -12.21 -46.94 REMARK 500 PHE A 337 68.85 -114.80 REMARK 500 VAL A 386 -33.80 -158.18 REMARK 500 SER B 116 142.35 -36.91 REMARK 500 TRP B 127 -138.57 -123.64 REMARK 500 LEU B 142 55.74 -154.02 REMARK 500 SER B 237 -112.47 52.28 REMARK 500 ASN B 256 -69.49 -101.82 REMARK 500 SER B 286 -63.73 -26.39 REMARK 500 PHE B 337 68.64 -119.25 REMARK 500 VAL B 386 -34.32 -155.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4UYU RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I IODIDE REMARK 900 COMPLEX - 2.3A REMARK 900 RELATED ID: 4UYW RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I HEPARIN REMARK 900 FRAGMENT COMPLEX - 1.7A REMARK 900 RELATED ID: 4UYZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM II - 2.8A REMARK 900 RELATED ID: 4UZ1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A REMARK 900 RELATED ID: 4UZ5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM IV - 2.1A REMARK 900 RELATED ID: 4UZ6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM V - SOS COMPLEX REMARK 900 - 1.9A REMARK 900 RELATED ID: 4UZ7 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACETYLASE NOTUM - CRYSTAL FORM VII - SOS REMARK 900 COMPLEX - 2.2A REMARK 900 RELATED ID: 4UZ9 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VII - SOS REMARK 900 COMPLEX - 2.2A REMARK 900 RELATED ID: 4UZA RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VIII - REMARK 900 PHOSPHATE COMPLEX - 2.4A REMARK 900 RELATED ID: 4UZK RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM FROM DROSOPHILA - CRYSTAL FORM REMARK 900 II - 1.9A REMARK 900 RELATED ID: 4UZL RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM I MYRISTOLEATE REMARK 900 COMPLEX - 2.1A REMARK 900 RELATED ID: 4UZQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE WNT DEACYLASE NOTUM IN COMPLEX WITH O-PALMITOLEOYL REMARK 900 SERINE - CRYSTAL FORM IX - 1.5A REMARK 900 RELATED ID: 4WBH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 R416-K597 REPLACED BY GNNNG LINKER DBREF 4UZJ A 86 415 UNP Q9VUX3 Q9VUX3_DROME 86 415 DBREF 4UZJ A 598 617 UNP Q9VUX3 Q9VUX3_DROME 598 617 DBREF 4UZJ B 86 415 UNP Q9VUX3 Q9VUX3_DROME 86 415 DBREF 4UZJ B 598 617 UNP Q9VUX3 Q9VUX3_DROME 598 617 SEQADV 4UZJ GLU A 81 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ THR A 82 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ GLY A 83 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ ASP A 84 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 85 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ GLY A 416 UNP Q9VUX3 LINKER SEQADV 4UZJ ASN A 417 UNP Q9VUX3 LINKER SEQADV 4UZJ ASN A 418 UNP Q9VUX3 LINKER SEQADV 4UZJ ASN A 419 UNP Q9VUX3 LINKER SEQADV 4UZJ GLY A 420 UNP Q9VUX3 LINKER SEQADV 4UZJ GLY A 618 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ THR A 619 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 620 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 621 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 622 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 623 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 624 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 625 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 626 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 627 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 628 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS A 629 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ GLU B 81 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ THR B 82 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ GLY B 83 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ ASP B 84 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 85 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ GLY B 416 UNP Q9VUX3 LINKER SEQADV 4UZJ ASN B 417 UNP Q9VUX3 LINKER SEQADV 4UZJ ASN B 418 UNP Q9VUX3 LINKER SEQADV 4UZJ ASN B 419 UNP Q9VUX3 LINKER SEQADV 4UZJ GLY B 420 UNP Q9VUX3 LINKER SEQADV 4UZJ GLY B 618 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ THR B 619 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 620 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 621 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 622 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 623 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 624 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 625 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 626 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 627 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 628 UNP Q9VUX3 EXPRESSION TAG SEQADV 4UZJ HIS B 629 UNP Q9VUX3 EXPRESSION TAG SEQRES 1 A 372 GLU THR GLY ASP HIS ARG SER LEU LYS ARG ALA ASN LEU SEQRES 2 A 372 ALA ASN THR SER ILE THR CYS ASN ASP GLY SER HIS ALA SEQRES 3 A 372 GLY PHE TYR LEU ARG LYS HIS PRO SER SER LYS LYS TRP SEQRES 4 A 372 ILE VAL LEU LEU GLU GLY GLY TRP HIS CYS PHE ASP VAL SEQRES 5 A 372 ARG SER CYS ARG SER ARG TRP MET ARG LEU ARG HIS LEU SEQRES 6 A 372 MET THR SER SER GLN TRP PRO GLU THR ARG ASP VAL GLY SEQRES 7 A 372 GLY ILE LEU SER PRO HIS PRO GLU GLU ASN PRO TYR TRP SEQRES 8 A 372 HIS ASN ALA ASN HIS VAL LEU ILE PRO TYR CYS SER SER SEQRES 9 A 372 ASP SER TRP SER GLY THR ARG THR GLU PRO ASP THR SER SEQRES 10 A 372 ASP ARG GLU ASN SER TRP ARG PHE MET GLY ALA LEU ILE SEQRES 11 A 372 LEU ARG GLN VAL ILE ALA GLU LEU ILE PRO VAL GLY LEU SEQRES 12 A 372 GLY ARG VAL PRO GLY GLY GLU LEU MET LEU VAL GLY SER SEQRES 13 A 372 SER ALA GLY GLY MET GLY VAL MET LEU ASN LEU ASP ARG SEQRES 14 A 372 ILE ARG ASP PHE LEU VAL ASN GLU LYS LYS LEU GLN ILE SEQRES 15 A 372 THR VAL ARG GLY VAL SER ASP SER GLY TRP PHE LEU ASP SEQRES 16 A 372 ARG GLU PRO TYR THR PRO ALA ALA VAL ALA SER ASN GLU SEQRES 17 A 372 ALA VAL ARG GLN GLY TRP LYS LEU TRP GLN GLY LEU LEU SEQRES 18 A 372 PRO GLU GLU CYS THR LYS SER TYR PRO THR GLU PRO TRP SEQRES 19 A 372 ARG CYS TYR TYR GLY TYR ARG LEU TYR PRO THR LEU LYS SEQRES 20 A 372 THR PRO LEU PHE VAL PHE GLN TRP LEU PHE ASP GLU ALA SEQRES 21 A 372 GLN MET ARG VAL ASP ASN VAL GLY ALA PRO VAL THR PRO SEQRES 22 A 372 GLN GLN TRP ASN TYR ILE HIS GLU MET GLY GLY ALA LEU SEQRES 23 A 372 ARG SER SER LEU ASP ASN VAL SER ALA VAL PHE ALA PRO SEQRES 24 A 372 SER CYS ILE GLY HIS GLY VAL LEU PHE LYS ARG ASP TRP SEQRES 25 A 372 VAL ASN ILE LYS ILE ASP ASP ILE SER LEU PRO SER ALA SEQRES 26 A 372 LEU ARG CYS TRP GLU HIS SER THR ARG SER GLY ASN ASN SEQRES 27 A 372 ASN GLY CYS GLY LEU ARG LEU LEU GLU ARG CYS SER TRP SEQRES 28 A 372 PRO GLN CYS ASN HIS SER CYS PRO THR GLY THR HIS HIS SEQRES 29 A 372 HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 372 GLU THR GLY ASP HIS ARG SER LEU LYS ARG ALA ASN LEU SEQRES 2 B 372 ALA ASN THR SER ILE THR CYS ASN ASP GLY SER HIS ALA SEQRES 3 B 372 GLY PHE TYR LEU ARG LYS HIS PRO SER SER LYS LYS TRP SEQRES 4 B 372 ILE VAL LEU LEU GLU GLY GLY TRP HIS CYS PHE ASP VAL SEQRES 5 B 372 ARG SER CYS ARG SER ARG TRP MET ARG LEU ARG HIS LEU SEQRES 6 B 372 MET THR SER SER GLN TRP PRO GLU THR ARG ASP VAL GLY SEQRES 7 B 372 GLY ILE LEU SER PRO HIS PRO GLU GLU ASN PRO TYR TRP SEQRES 8 B 372 HIS ASN ALA ASN HIS VAL LEU ILE PRO TYR CYS SER SER SEQRES 9 B 372 ASP SER TRP SER GLY THR ARG THR GLU PRO ASP THR SER SEQRES 10 B 372 ASP ARG GLU ASN SER TRP ARG PHE MET GLY ALA LEU ILE SEQRES 11 B 372 LEU ARG GLN VAL ILE ALA GLU LEU ILE PRO VAL GLY LEU SEQRES 12 B 372 GLY ARG VAL PRO GLY GLY GLU LEU MET LEU VAL GLY SER SEQRES 13 B 372 SER ALA GLY GLY MET GLY VAL MET LEU ASN LEU ASP ARG SEQRES 14 B 372 ILE ARG ASP PHE LEU VAL ASN GLU LYS LYS LEU GLN ILE SEQRES 15 B 372 THR VAL ARG GLY VAL SER ASP SER GLY TRP PHE LEU ASP SEQRES 16 B 372 ARG GLU PRO TYR THR PRO ALA ALA VAL ALA SER ASN GLU SEQRES 17 B 372 ALA VAL ARG GLN GLY TRP LYS LEU TRP GLN GLY LEU LEU SEQRES 18 B 372 PRO GLU GLU CYS THR LYS SER TYR PRO THR GLU PRO TRP SEQRES 19 B 372 ARG CYS TYR TYR GLY TYR ARG LEU TYR PRO THR LEU LYS SEQRES 20 B 372 THR PRO LEU PHE VAL PHE GLN TRP LEU PHE ASP GLU ALA SEQRES 21 B 372 GLN MET ARG VAL ASP ASN VAL GLY ALA PRO VAL THR PRO SEQRES 22 B 372 GLN GLN TRP ASN TYR ILE HIS GLU MET GLY GLY ALA LEU SEQRES 23 B 372 ARG SER SER LEU ASP ASN VAL SER ALA VAL PHE ALA PRO SEQRES 24 B 372 SER CYS ILE GLY HIS GLY VAL LEU PHE LYS ARG ASP TRP SEQRES 25 B 372 VAL ASN ILE LYS ILE ASP ASP ILE SER LEU PRO SER ALA SEQRES 26 B 372 LEU ARG CYS TRP GLU HIS SER THR ARG SER GLY ASN ASN SEQRES 27 B 372 ASN GLY CYS GLY LEU ARG LEU LEU GLU ARG CYS SER TRP SEQRES 28 B 372 PRO GLN CYS ASN HIS SER CYS PRO THR GLY THR HIS HIS SEQRES 29 B 372 HIS HIS HIS HIS HIS HIS HIS HIS MODRES 4UZJ ASN B 95 ASN GLYCOSYLATION SITE HET NAG B1617 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HOH *14(H2 O) HELIX 1 1 ASP A 131 LEU A 142 1 12 HELIX 2 2 ARG A 143 MET A 146 5 4 HELIX 3 3 GLY A 158 SER A 162 5 5 HELIX 4 4 MET A 206 ILE A 219 1 14 HELIX 5 5 SER A 237 ASN A 256 1 20 HELIX 6 6 ALA A 285 GLN A 298 1 14 HELIX 7 7 PRO A 302 TYR A 309 1 8 HELIX 8 8 GLU A 312 TYR A 317 5 6 HELIX 9 9 TYR A 318 TYR A 323 1 6 HELIX 10 10 PRO A 324 LEU A 326 5 3 HELIX 11 11 GLU A 339 ASN A 346 1 8 HELIX 12 12 THR A 352 LEU A 370 1 19 HELIX 13 13 LYS A 389 ASN A 394 5 6 HELIX 14 14 LEU A 402 THR A 413 1 12 HELIX 15 15 ASP B 131 LEU B 142 1 12 HELIX 16 16 ARG B 143 MET B 146 5 4 HELIX 17 17 GLY B 158 SER B 162 5 5 HELIX 18 18 MET B 206 GLY B 222 1 17 HELIX 19 19 SER B 237 ASN B 256 1 20 HELIX 20 20 ALA B 285 GLN B 298 1 14 HELIX 21 21 PRO B 302 LYS B 307 1 6 HELIX 22 22 GLU B 312 TYR B 317 5 6 HELIX 23 23 TYR B 318 TYR B 323 1 6 HELIX 24 24 PRO B 324 LEU B 326 5 3 HELIX 25 25 GLU B 339 ASN B 346 1 8 HELIX 26 26 THR B 352 LEU B 370 1 19 HELIX 27 27 LYS B 389 ASN B 394 5 6 HELIX 28 28 LEU B 402 SER B 412 1 11 SHEET 1 AA10 THR A 154 ARG A 155 0 SHEET 2 AA10 LEU A 88 ASN A 92 -1 O LEU A 88 N ARG A 155 SHEET 3 AA10 GLY A 107 ARG A 111 -1 O PHE A 108 N ALA A 91 SHEET 4 AA10 ASN A 175 ILE A 179 -1 O HIS A 176 N ARG A 111 SHEET 5 AA10 LYS A 118 LEU A 123 1 O LYS A 118 N ASN A 175 SHEET 6 AA10 GLY A 229 SER A 236 1 O GLU A 230 N TRP A 119 SHEET 7 AA10 ILE A 262 ASP A 269 1 O THR A 263 N LEU A 231 SHEET 8 AA10 LEU A 330 PHE A 333 1 O PHE A 331 N SER A 268 SHEET 9 AA10 VAL A 376 ALA A 378 1 N PHE A 377 O VAL A 332 SHEET 10 AA10 ARG A 601 LEU A 603 1 O LEU A 602 N ALA A 378 SHEET 1 AB 2 PHE A 337 ASP A 338 0 SHEET 2 AB 2 ILE A 382 GLY A 383 1 N GLY A 383 O PHE A 337 SHEET 1 AC 2 LYS A 396 ILE A 397 0 SHEET 2 AC 2 ILE A 400 SER A 401 -1 O ILE A 400 N ILE A 397 SHEET 1 BA10 THR B 154 ARG B 155 0 SHEET 2 BA10 LEU B 88 ASN B 92 -1 O LEU B 88 N ARG B 155 SHEET 3 BA10 GLY B 107 ARG B 111 -1 O PHE B 108 N ALA B 91 SHEET 4 BA10 ASN B 175 ILE B 179 -1 O HIS B 176 N ARG B 111 SHEET 5 BA10 LYS B 118 LEU B 123 1 O LYS B 118 N ASN B 175 SHEET 6 BA10 GLY B 229 SER B 236 1 O GLU B 230 N TRP B 119 SHEET 7 BA10 ILE B 262 ASP B 269 1 O THR B 263 N LEU B 231 SHEET 8 BA10 LEU B 330 PHE B 333 1 O PHE B 331 N SER B 268 SHEET 9 BA10 VAL B 376 ALA B 378 1 N PHE B 377 O VAL B 332 SHEET 10 BA10 ARG B 601 LEU B 603 1 O LEU B 602 N ALA B 378 SHEET 1 BB 2 PHE B 337 ASP B 338 0 SHEET 2 BB 2 ILE B 382 GLY B 383 1 N GLY B 383 O PHE B 337 SHEET 1 BC 2 LYS B 396 ILE B 397 0 SHEET 2 BC 2 ILE B 400 SER B 401 -1 O ILE B 400 N ILE B 397 SSBOND 1 CYS A 100 CYS A 182 1555 1555 2.09 SSBOND 2 CYS A 129 CYS A 135 1555 1555 2.07 SSBOND 3 CYS A 305 CYS A 316 1555 1555 2.04 SSBOND 4 CYS A 381 CYS A 615 1555 1555 2.06 SSBOND 5 CYS A 606 CYS A 611 1555 1555 2.04 SSBOND 6 CYS B 100 CYS B 182 1555 1555 2.07 SSBOND 7 CYS B 129 CYS B 135 1555 1555 2.09 SSBOND 8 CYS B 305 CYS B 316 1555 1555 2.09 SSBOND 9 CYS B 381 CYS B 615 1555 1555 2.06 SSBOND 10 CYS B 606 CYS B 611 1555 1555 2.05 LINK ND2 ASN B 95 C1 NAG B1617 1555 1555 1.45 CRYST1 59.388 81.394 86.945 90.00 105.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016838 0.000000 0.004682 0.00000 SCALE2 0.000000 0.012286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011938 0.00000 MTRIX1 1 -1.000000 -0.010000 -0.011000 -25.59700 1 MTRIX2 1 0.002000 -0.829000 0.560000 -32.52700 1 MTRIX3 1 -0.015000 0.560000 0.829000 9.40500 1