HEADER VIRAL PROTEIN 11-SEP-14 4V07 TITLE DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UL26; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-224; COMPND 5 SYNONYM: PSEUDORABIES VIRUS PROTEASE; COMPND 6 EC: 3.4.21.97; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N-TERMINAL (HIS)6-TAG WITH THROMBIN-LINKER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUID HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: PSEUDORABIES VIRUS; SOURCE 4 ORGANISM_TAXID: 10345; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS VIRAL PROTEIN, ASSEMBLIN, UL26P, SERINE PROTEASE, PRV, HERPES, HERPES KEYWDS 2 VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR M.ZUEHLSDORF,S.WERTEN,G.J.PALM,W.HINRICHS REVDAT 3 10-JAN-24 4V07 1 REMARK LINK REVDAT 2 22-JUL-15 4V07 1 JRNL REVDAT 1 15-JUL-15 4V07 0 JRNL AUTH M.ZUEHLSDORF,S.WERTEN,B.G.KLUPP,G.J.PALM,T.METTENLEITER, JRNL AUTH 2 W.HINRICHS JRNL TITL DIMERIZATION-INDUCED ALLOSTERIC CHANGES OF THE OXYANION-HOLE JRNL TITL 2 LOOP ACTIVATE THE PSEUDORABIES VIRUS ASSEMBLIN PUL26N, A JRNL TITL 3 HERPESVIRUS SERINE PROTEASE JRNL REF PLOS PATHOG. V. 11 5045 2015 JRNL REFN ISSN 1553-7366 JRNL PMID 26161660 JRNL DOI 10.1371/JOURNAL.PPAT.1005045 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.34000 REMARK 3 B22 (A**2) : -0.80000 REMARK 3 B33 (A**2) : -1.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3405 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3270 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4645 ; 1.722 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7468 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 5.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;34.610 ;21.918 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;14.968 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;18.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3901 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 770 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1771 ; 2.297 ; 3.036 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1770 ; 2.290 ; 3.034 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2212 ; 3.386 ; 4.539 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1634 ; 2.928 ; 3.393 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): -14.1021 -34.6005 39.4877 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.0443 REMARK 3 T33: 0.0981 T12: -0.0048 REMARK 3 T13: 0.0506 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 1.4976 L22: 1.3083 REMARK 3 L33: 3.1396 L12: 0.6976 REMARK 3 L13: -1.3715 L23: -1.3598 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: 0.0391 S13: 0.1242 REMARK 3 S21: 0.2842 S22: 0.0849 S23: 0.2673 REMARK 3 S31: -0.1708 S32: -0.1221 S33: -0.2020 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 224 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3835 -28.7753 13.4519 REMARK 3 T TENSOR REMARK 3 T11: 0.1962 T22: 0.0043 REMARK 3 T33: 0.0596 T12: -0.0164 REMARK 3 T13: 0.0059 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.9999 L22: 1.7706 REMARK 3 L33: 1.0541 L12: 0.5624 REMARK 3 L13: -0.2376 L23: -0.4688 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0046 S13: -0.2536 REMARK 3 S21: -0.1846 S22: -0.0203 S23: -0.2567 REMARK 3 S31: 0.0281 S32: 0.0296 S33: 0.0424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. RESIDUES 114,218 OF CHAIN A REMARK 3 AND RESIDUES 19,84,90,114,136,156,176,218,223 OF CHAIN B MODELED REMARK 3 AS ALA AND 169 FROM CHAIN A SHORTENED DUE TO INSUFFICIENT REMARK 3 ELECTRON DENSITY, TAG AND THROMBIN-LINKER OF BOTH CHAINS AND REMARK 3 RESIDUES 219-224 OF CHAIN A ARE DISORDERED REMARK 4 REMARK 4 4V07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 62.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1AT3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS/HCL PH 8, 0.4 M MGCL2, 14% REMARK 280 PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.68750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.37900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.99300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.37900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.68750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.99300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 219 REMARK 465 HIS A 220 REMARK 465 THR A 221 REMARK 465 TYR A 222 REMARK 465 LEU A 223 REMARK 465 GLN A 224 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 169 CZ NH1 NH2 REMARK 470 ARG A 218 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 ARG B 90 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 156 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 218 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 223 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 161 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -152.93 -97.68 REMARK 500 CYS A 47 42.56 -141.06 REMARK 500 ASP A 122 -159.85 -141.96 REMARK 500 THR A 140 52.61 -90.24 REMARK 500 CYS B 47 51.31 -149.94 REMARK 500 CYS B 47 52.33 -148.08 REMARK 500 THR B 140 44.94 -96.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1223 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2032 O REMARK 620 2 HOH A2033 O 90.7 REMARK 620 3 HOH A2034 O 77.5 98.5 REMARK 620 4 HOH A2063 O 138.3 130.5 98.9 REMARK 620 5 HOH A2064 O 68.6 108.5 136.3 89.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1223 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V08 RELATED DB: PDB REMARK 900 INHIBITED DIMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2 A REMARK 900 RESOLUTION REMARK 900 RELATED ID: 4V0T RELATED DB: PDB REMARK 900 MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.1 A RESOLUTION REMARK 900 RELATED ID: 4CX8 RELATED DB: PDB REMARK 900 MONOMERIC PSEUDORABIES VIRUS PROTEASE PUL26N AT 2.5 A RESOLUTION DBREF 4V07 A 1 224 UNP Q83417 Q83417_9ALPH 1 224 DBREF 4V07 B 1 224 UNP Q83417 Q83417_9ALPH 1 224 SEQADV 4V07 MET A -19 UNP Q83417 EXPRESSION TAG SEQADV 4V07 GLY A -18 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER A -17 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER A -16 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A -15 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A -14 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A -13 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A -12 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A -11 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A -10 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER A -9 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER A -8 UNP Q83417 EXPRESSION TAG SEQADV 4V07 GLY A -7 UNP Q83417 EXPRESSION TAG SEQADV 4V07 LEU A -6 UNP Q83417 EXPRESSION TAG SEQADV 4V07 VAL A -5 UNP Q83417 EXPRESSION TAG SEQADV 4V07 PRO A -4 UNP Q83417 EXPRESSION TAG SEQADV 4V07 ARG A -3 UNP Q83417 EXPRESSION TAG SEQADV 4V07 GLY A -2 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER A -1 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS A 0 UNP Q83417 EXPRESSION TAG SEQADV 4V07 MET B -19 UNP Q83417 EXPRESSION TAG SEQADV 4V07 GLY B -18 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER B -17 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER B -16 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B -15 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B -14 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B -13 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B -12 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B -11 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B -10 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER B -9 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER B -8 UNP Q83417 EXPRESSION TAG SEQADV 4V07 GLY B -7 UNP Q83417 EXPRESSION TAG SEQADV 4V07 LEU B -6 UNP Q83417 EXPRESSION TAG SEQADV 4V07 VAL B -5 UNP Q83417 EXPRESSION TAG SEQADV 4V07 PRO B -4 UNP Q83417 EXPRESSION TAG SEQADV 4V07 ARG B -3 UNP Q83417 EXPRESSION TAG SEQADV 4V07 GLY B -2 UNP Q83417 EXPRESSION TAG SEQADV 4V07 SER B -1 UNP Q83417 EXPRESSION TAG SEQADV 4V07 HIS B 0 UNP Q83417 EXPRESSION TAG SEQRES 1 A 244 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 244 LEU VAL PRO ARG GLY SER HIS MET GLY PRO VAL TYR VAL SEQRES 3 A 244 SER GLY TYR LEU ALA LEU TYR ASP ARG ASP GLY GLY GLU SEQRES 4 A 244 LEU ALA LEU THR ARG GLU ILE VAL ALA ALA ALA LEU PRO SEQRES 5 A 244 PRO ALA GLY PRO LEU PRO ILE ASN ILE ASP HIS ARG PRO SEQRES 6 A 244 ARG CYS ASP ILE GLY ALA VAL LEU ALA VAL VAL ASP ASP SEQRES 7 A 244 ASP ARG GLY PRO PHE PHE LEU GLY VAL VAL ASN CYS PRO SEQRES 8 A 244 GLN LEU GLY ALA VAL LEU ALA ARG ALA VAL GLY PRO ASP SEQRES 9 A 244 PHE PHE GLY ASP MET ARG LEU SER ASP GLU GLU ARG LEU SEQRES 10 A 244 LEU TYR LEU LEU SER ASN TYR LEU PRO SER ALA SER LEU SEQRES 11 A 244 SER SER ARG ARG LEU ALA PRO GLY GLU ALA PRO ASP GLU SEQRES 12 A 244 THR LEU PHE ALA HIS VAL ALA LEU CYS VAL ILE GLY ARG SEQRES 13 A 244 ARG VAL GLY THR ILE VAL VAL TYR ASP ALA SER PRO GLU SEQRES 14 A 244 ALA ALA VAL ALA PRO PHE ARG GLN LEU SER ALA ARG ALA SEQRES 15 A 244 ARG SER GLU LEU LEU ALA ARG ALA ALA GLU SER PRO ASP SEQRES 16 A 244 ARG GLU ARG VAL TRP HIS MET SER GLU GLU ALA LEU THR SEQRES 17 A 244 ARG ALA LEU LEU SER THR ALA VAL ASN ASN MET LEU LEU SEQRES 18 A 244 ARG ASP ARG TRP GLU LEU VAL ALA ALA ARG ARG ARG GLU SEQRES 19 A 244 ALA GLY VAL ARG GLY HIS THR TYR LEU GLN SEQRES 1 B 244 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 244 LEU VAL PRO ARG GLY SER HIS MET GLY PRO VAL TYR VAL SEQRES 3 B 244 SER GLY TYR LEU ALA LEU TYR ASP ARG ASP GLY GLY GLU SEQRES 4 B 244 LEU ALA LEU THR ARG GLU ILE VAL ALA ALA ALA LEU PRO SEQRES 5 B 244 PRO ALA GLY PRO LEU PRO ILE ASN ILE ASP HIS ARG PRO SEQRES 6 B 244 ARG CYS ASP ILE GLY ALA VAL LEU ALA VAL VAL ASP ASP SEQRES 7 B 244 ASP ARG GLY PRO PHE PHE LEU GLY VAL VAL ASN CYS PRO SEQRES 8 B 244 GLN LEU GLY ALA VAL LEU ALA ARG ALA VAL GLY PRO ASP SEQRES 9 B 244 PHE PHE GLY ASP MET ARG LEU SER ASP GLU GLU ARG LEU SEQRES 10 B 244 LEU TYR LEU LEU SER ASN TYR LEU PRO SER ALA SER LEU SEQRES 11 B 244 SER SER ARG ARG LEU ALA PRO GLY GLU ALA PRO ASP GLU SEQRES 12 B 244 THR LEU PHE ALA HIS VAL ALA LEU CYS VAL ILE GLY ARG SEQRES 13 B 244 ARG VAL GLY THR ILE VAL VAL TYR ASP ALA SER PRO GLU SEQRES 14 B 244 ALA ALA VAL ALA PRO PHE ARG GLN LEU SER ALA ARG ALA SEQRES 15 B 244 ARG SER GLU LEU LEU ALA ARG ALA ALA GLU SER PRO ASP SEQRES 16 B 244 ARG GLU ARG VAL TRP HIS MET SER GLU GLU ALA LEU THR SEQRES 17 B 244 ARG ALA LEU LEU SER THR ALA VAL ASN ASN MET LEU LEU SEQRES 18 B 244 ARG ASP ARG TRP GLU LEU VAL ALA ALA ARG ARG ARG GLU SEQRES 19 B 244 ALA GLY VAL ARG GLY HIS THR TYR LEU GLN HET CL A1219 1 HET CL A1220 1 HET CL A1221 1 HET CL A1222 1 HET MG A1223 1 HET CL B1225 1 HET CL B1226 1 HET CL B1227 1 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 CL 7(CL 1-) FORMUL 7 MG MG 2+ FORMUL 11 HOH *133(H2 O) HELIX 1 1 THR A 23 LEU A 31 1 9 HELIX 2 2 CYS A 70 VAL A 81 1 12 HELIX 3 3 SER A 92 LEU A 105 1 14 HELIX 4 4 SER A 147 ALA A 153 1 7 HELIX 5 5 SER A 159 SER A 173 1 15 HELIX 6 6 PRO A 174 ARG A 178 5 5 HELIX 7 7 SER A 183 MET A 199 1 17 HELIX 8 8 ASP A 203 GLY A 216 1 14 HELIX 9 9 THR B 23 LEU B 31 1 9 HELIX 10 10 PRO B 71 VAL B 81 1 11 HELIX 11 11 SER B 92 LEU B 105 1 14 HELIX 12 12 SER B 147 ALA B 153 1 7 HELIX 13 13 SER B 159 GLU B 172 1 14 HELIX 14 14 SER B 183 MET B 199 1 17 HELIX 15 15 ASP B 203 GLY B 216 1 14 SHEET 1 AA 7 SER A 107 SER A 112 0 SHEET 2 AA 7 PHE A 126 CYS A 132 -1 N ALA A 127 O SER A 111 SHEET 3 AA 7 PRO A 38 ILE A 41 1 O PRO A 38 N VAL A 129 SHEET 4 AA 7 ASP A 48 ASP A 58 -1 N ILE A 49 O ILE A 39 SHEET 5 AA 7 GLY A 61 VAL A 68 -1 O GLY A 61 N ASP A 58 SHEET 6 AA 7 VAL A 4 TYR A 9 -1 O VAL A 4 N VAL A 68 SHEET 7 AA 7 VAL A 143 ASP A 145 -1 O VAL A 143 N SER A 7 SHEET 1 BA 7 SER B 107 SER B 112 0 SHEET 2 BA 7 PHE B 126 CYS B 132 -1 N ALA B 127 O SER B 111 SHEET 3 BA 7 PRO B 38 ILE B 41 1 O PRO B 38 N VAL B 129 SHEET 4 BA 7 ASP B 48 ASP B 58 -1 N ILE B 49 O ILE B 39 SHEET 5 BA 7 GLY B 61 VAL B 68 -1 O GLY B 61 N ASP B 58 SHEET 6 BA 7 VAL B 4 TYR B 9 -1 O VAL B 4 N VAL B 68 SHEET 7 BA 7 VAL B 143 ASP B 145 -1 O VAL B 143 N SER B 7 LINK MG MG A1223 O HOH A2032 1555 1555 2.59 LINK MG MG A1223 O HOH A2033 1555 1555 1.93 LINK MG MG A1223 O HOH A2034 1555 1555 1.81 LINK MG MG A1223 O HOH A2063 1555 1555 1.89 LINK MG MG A1223 O HOH A2064 1555 1555 2.11 CISPEP 1 LEU A 31 PRO A 32 0 -12.70 CISPEP 2 LEU B 31 PRO B 32 0 -3.90 SITE 1 AC1 5 ASP A 203 HOH A2054 ASP B 203 ARG B 204 SITE 2 AC1 5 TRP B 205 SITE 1 AC2 3 ARG A 161 HOH A2040 SER B 183 SITE 1 AC3 6 ASP A 203 ARG A 204 TRP A 205 HOH A2059 SITE 2 AC3 6 ASP B 203 HOH B2063 SITE 1 AC4 3 SER A 109 ARG A 136 HOH A2029 SITE 1 AC5 3 SER B 109 ARG B 136 HOH B2040 SITE 1 AC6 3 ALA A 54 VAL A 55 ARG A 169 SITE 1 AC7 4 PRO B 33 ALA B 54 VAL B 55 ARG B 169 SITE 1 AC8 7 ASP A 145 HOH A2032 HOH A2033 HOH A2034 SITE 2 AC8 7 HOH A2063 HOH A2064 ASP B 145 CRYST1 51.375 75.986 110.758 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019465 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009029 0.00000 MTRIX1 1 0.120500 -0.002173 0.992700 -28.33000 1 MTRIX2 1 0.166700 -0.985800 -0.022390 -59.85000 1 MTRIX3 1 0.978600 0.168200 -0.118400 37.42000 1