HEADER HYDROLASE 24-SEP-14 4V14 TITLE STRUCTURE AND FUNCTION ANALYSIS OF MUTT FROM THE PSYCHROFILE FISH TITLE 2 PATHOGEN ALIIVIBRIO SALMONICIDA AND THE MESOPHILE VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTATOR MUTT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MUTT-NUDIX HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: AI CELLS KEYWDS HYDROLASE, VIBRIO CHOLERA MUTT EXPDTA X-RAY DIFFRACTION AUTHOR K.LIAN,H.-K.S.LEIROS,E.MOE REVDAT 4 10-JAN-24 4V14 1 REMARK REVDAT 3 23-OCT-19 4V14 1 REMARK ATOM REVDAT 2 18-MAR-15 4V14 1 JRNL REVDAT 1 04-FEB-15 4V14 0 JRNL AUTH K.LIAN,H.K.LEIROS,E.MOE JRNL TITL MUTT FROM THE FISH PATHOGEN ALIIVIBRIO SALMONICIDA IS A JRNL TITL 2 COLD-ACTIVE NUCLEOTIDE-POOL SANITIZATION ENZYME WITH JRNL TITL 3 UNEXPECTEDLY HIGH THERMOSTABILITY. JRNL REF FEBS OPEN BIO V. 5 107 2015 JRNL REFN ESSN 2211-5463 JRNL PMID 25737836 JRNL DOI 10.1016/J.FOB.2015.01.006 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 11695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0007 - 3.7889 0.95 2792 144 0.1993 0.2588 REMARK 3 2 3.7889 - 3.0350 1.00 2801 147 0.2307 0.3672 REMARK 3 3 3.0350 - 2.6596 1.00 2783 133 0.2669 0.3071 REMARK 3 4 2.6596 - 2.4202 1.00 2757 138 0.2844 0.3727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 2030 REMARK 3 ANGLE : 1.708 2736 REMARK 3 CHIRALITY : 0.076 279 REMARK 3 PLANARITY : 0.008 368 REMARK 3 DIHEDRAL : 19.869 736 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8918 -24.4532 0.4443 REMARK 3 T TENSOR REMARK 3 T11: 0.3588 T22: 0.3773 REMARK 3 T33: 0.4202 T12: -0.0408 REMARK 3 T13: 0.0183 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 2.0319 L22: 0.6343 REMARK 3 L33: 0.2745 L12: -1.1584 REMARK 3 L13: -0.6188 L23: 0.3533 REMARK 3 S TENSOR REMARK 3 S11: 0.1618 S12: 0.1149 S13: -0.1845 REMARK 3 S21: 0.0387 S22: -0.0865 S23: 0.0236 REMARK 3 S31: 0.1237 S32: -0.0041 S33: 0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4985 -25.1484 6.8398 REMARK 3 T TENSOR REMARK 3 T11: 0.5974 T22: 0.6883 REMARK 3 T33: 0.4927 T12: -0.0615 REMARK 3 T13: -0.0128 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.7290 L22: 0.2867 REMARK 3 L33: 0.6377 L12: 0.0657 REMARK 3 L13: -0.3508 L23: 0.2707 REMARK 3 S TENSOR REMARK 3 S11: 0.1632 S12: -0.2897 S13: 0.0614 REMARK 3 S21: 0.3074 S22: 0.1361 S23: -0.1293 REMARK 3 S31: 0.0100 S32: -0.0320 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11909 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 250.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3A6V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULPHATE, 0.1 M TRIS PH REMARK 280 8.5, 1.26 M AMMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.28500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.57500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 22.64250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.57500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.92750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.57500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.57500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 22.64250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.57500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.57500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.92750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.28500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2027 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 28 REMARK 465 HIS A 29 REMARK 465 TYR A 76 REMARK 465 THR A 77 REMARK 465 ASP A 78 REMARK 465 LYS A 79 REMARK 465 GLY A 132 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ARG B 24 REMARK 465 PRO B 25 REMARK 465 ASP B 26 REMARK 465 HIS B 27 REMARK 465 LEU B 28 REMARK 465 HIS B 29 REMARK 465 LYS B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 32 REMARK 465 THR B 77 REMARK 465 ASP B 78 REMARK 465 LYS B 79 REMARK 465 GLY B 132 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 2 CG CD CE NZ REMARK 480 PHE A 12 CZ REMARK 480 GLU A 18 OE1 REMARK 480 ILE A 21 CD1 REMARK 480 ASP A 26 CG OD1 OD2 REMARK 480 HIS A 27 N CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 30 CB CG CD CE NZ REMARK 480 GLY A 31 C REMARK 480 LYS A 40 CD CE NZ REMARK 480 ARG A 47 CD REMARK 480 GLU A 48 CD REMARK 480 GLU A 56 OE2 REMARK 480 THR A 64 CG2 REMARK 480 GLN A 66 OE1 NE2 REMARK 480 HIS A 71 ND1 CD2 CE1 NE2 REMARK 480 PHE A 72 CE2 CZ REMARK 480 ASP A 73 OD1 OD2 REMARK 480 ASP A 75 OD1 OD2 REMARK 480 LEU A 87 CD2 REMARK 480 LYS A 107 CD CE REMARK 480 ARG A 115 NH2 REMARK 480 ASP A 121 OD2 REMARK 480 GLN A 126 OE1 REMARK 480 PHE B 12 CD2 CE2 CZ REMARK 480 ASP B 15 CB CG OD1 OD2 REMARK 480 GLN B 16 OE1 REMARK 480 GLU B 18 CG CD OE1 OE2 REMARK 480 LYS B 40 CG CD CE NZ REMARK 480 GLU B 42 CG CD OE1 OE2 REMARK 480 ARG B 47 CD REMARK 480 GLN B 67 CG CD OE1 NE2 REMARK 480 HIS B 71 ND1 CD2 CE1 NE2 REMARK 480 PHE B 72 CD1 CE1 CE2 CZ REMARK 480 ASP B 73 CG OD1 OD2 REMARK 480 PHE B 74 C CD1 CD2 CE1 CE2 CZ REMARK 480 SER B 80 CB OG REMARK 480 ASP B 92 CB CG OD1 OD2 REMARK 480 ARG B 98 CZ NH1 NH2 REMARK 480 ASP B 110 CG OD1 OD2 REMARK 480 GLU B 118 CB CG CD OE1 OE2 REMARK 480 GLN B 126 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 25 N HIS A 27 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 93 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 51.43 -34.58 REMARK 500 ILE A 59 -13.14 -143.04 REMARK 500 GLN A 70 141.04 -174.95 REMARK 500 GLN A 130 37.67 -72.72 REMARK 500 ARG B 3 -52.84 -148.90 REMARK 500 ASP B 75 100.02 53.80 REMARK 500 ALA B 119 -51.57 168.78 REMARK 500 GLN B 130 -120.59 92.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 130 PHE B 131 -142.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3016 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B2017 DISTANCE = 6.39 ANGSTROMS DBREF 4V14 A 2 132 UNP A6XUL6 A6XUL6_VIBCL 2 132 DBREF 4V14 B 2 132 UNP A6XUL6 A6XUL6_VIBCL 2 132 SEQADV 4V14 HIS A -5 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS A -4 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS A -3 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS A -2 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS A -1 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS A 0 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS B -5 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS B -4 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS B -3 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS B -2 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS B -1 UNP A6XUL6 EXPRESSION TAG SEQADV 4V14 HIS B 0 UNP A6XUL6 EXPRESSION TAG SEQRES 1 A 138 HIS HIS HIS HIS HIS HIS MET LYS ARG ILE HIS ILE VAL SEQRES 2 A 138 ALA GLY ILE ILE PHE ASN SER ASP GLN SER GLU ILE PHE SEQRES 3 A 138 ILE THR LYS ARG PRO ASP HIS LEU HIS LYS GLY GLY PHE SEQRES 4 A 138 TRP GLU PHE PRO GLY GLY LYS VAL GLU ALA GLY GLU SER SEQRES 5 A 138 ARG GLU GLN ALA MET VAL ARG GLU LEU GLU GLU GLU ILE SEQRES 6 A 138 GLY ILE THR VAL THR GLU GLN GLN ALA PHE GLN HIS PHE SEQRES 7 A 138 ASP PHE ASP TYR THR ASP LYS SER LEU SER PHE ASP PHE SEQRES 8 A 138 MET LEU VAL THR ALA PHE ASP GLY GLN PRO HIS GLY ARG SEQRES 9 A 138 GLU GLY GLN GLN GLY GLY TRP VAL LYS ILE ALA ASP LEU SEQRES 10 A 138 ALA ASN TYR ARG PHE PRO GLU ALA ASN ASP PRO VAL VAL SEQRES 11 A 138 LYS GLN VAL ILE ALA GLN PHE GLY SEQRES 1 B 138 HIS HIS HIS HIS HIS HIS MET LYS ARG ILE HIS ILE VAL SEQRES 2 B 138 ALA GLY ILE ILE PHE ASN SER ASP GLN SER GLU ILE PHE SEQRES 3 B 138 ILE THR LYS ARG PRO ASP HIS LEU HIS LYS GLY GLY PHE SEQRES 4 B 138 TRP GLU PHE PRO GLY GLY LYS VAL GLU ALA GLY GLU SER SEQRES 5 B 138 ARG GLU GLN ALA MET VAL ARG GLU LEU GLU GLU GLU ILE SEQRES 6 B 138 GLY ILE THR VAL THR GLU GLN GLN ALA PHE GLN HIS PHE SEQRES 7 B 138 ASP PHE ASP TYR THR ASP LYS SER LEU SER PHE ASP PHE SEQRES 8 B 138 MET LEU VAL THR ALA PHE ASP GLY GLN PRO HIS GLY ARG SEQRES 9 B 138 GLU GLY GLN GLN GLY GLY TRP VAL LYS ILE ALA ASP LEU SEQRES 10 B 138 ALA ASN TYR ARG PHE PRO GLU ALA ASN ASP PRO VAL VAL SEQRES 11 B 138 LYS GLN VAL ILE ALA GLN PHE GLY FORMUL 3 HOH *48(H2 O) HELIX 1 1 SER A 46 GLY A 60 1 15 HELIX 2 2 ALA A 109 TYR A 114 5 6 HELIX 3 3 PRO A 117 ALA A 119 5 3 HELIX 4 4 ASN A 120 GLN A 130 1 11 HELIX 5 5 SER B 46 GLY B 60 1 15 HELIX 6 6 ALA B 109 TYR B 114 5 6 HELIX 7 7 ASN B 120 GLN B 130 1 11 SHEET 1 AA 2 GLY A 38 LYS A 40 0 SHEET 2 AA 2 ILE A 4 PHE A 12 -1 O VAL A 7 N GLY A 39 SHEET 1 AB 5 THR A 62 PHE A 74 0 SHEET 2 AB 5 LEU A 81 ASP A 92 -1 O LEU A 81 N PHE A 74 SHEET 3 AB 5 ILE A 4 PHE A 12 1 O ILE A 4 N SER A 82 SHEET 4 AB 5 GLU A 18 LYS A 23 -1 O PHE A 20 N ILE A 11 SHEET 5 AB 5 GLN A 102 LYS A 107 -1 O GLN A 102 N LYS A 23 SHEET 1 AC 4 THR A 62 PHE A 74 0 SHEET 2 AC 4 LEU A 81 ASP A 92 -1 O LEU A 81 N PHE A 74 SHEET 3 AC 4 ILE A 4 PHE A 12 1 O ILE A 4 N SER A 82 SHEET 4 AC 4 GLY A 38 LYS A 40 -1 O GLY A 39 N VAL A 7 SHEET 1 BA 4 GLY B 38 LYS B 40 0 SHEET 2 BA 4 ILE B 4 ILE B 11 -1 O VAL B 7 N GLY B 39 SHEET 3 BA 4 LEU B 81 ASP B 92 1 O SER B 82 N ILE B 6 SHEET 4 BA 4 THR B 62 ASP B 73 -1 O THR B 62 N ASP B 92 SHEET 1 BB 2 GLU B 18 LYS B 23 0 SHEET 2 BB 2 GLN B 102 LYS B 107 -1 O GLN B 102 N LYS B 23 CISPEP 1 SER B 14 ASP B 15 0 0.11 CRYST1 81.150 81.150 90.570 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012323 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011041 0.00000