HEADER SUGAR BINDING PROTEIN 25-SEP-14 4V18 TITLE SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM TITLE 2 GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS TITLE 3 FLAVEFACIENS FD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE BINDING MODULE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE BINDING MODULE, RESIDUES 436-594; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SELENOMETHIONINE DERIVATIVE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS FLAVEFACIENS; SOURCE 3 ORGANISM_TAXID: 641112; SOURCE 4 STRAIN: FD-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS SUGAR BINDING PROTEIN, CELLULOSOME EXPDTA X-RAY DIFFRACTION AUTHOR I.VENDITTO,M.S.J.CENTENO,L.M.A.FERREIRA,C.M.G.A.FONTES,S.NAJMUDIN REVDAT 3 13-JUL-16 4V18 1 JRNL REVDAT 2 29-JUN-16 4V18 1 JRNL REVDAT 1 20-JAN-16 4V18 0 JRNL AUTH I.VENDITTO,A.S.LUIS,M.RYDAHL,J.SCHUCKEL,V.O.FERNANDES, JRNL AUTH 2 S.VIDAL-MELGOSA,P.BULE,A.GOYAL,V.M.R.PIRES,C.G.DOURADO, JRNL AUTH 3 L.M.A.FERREIRA,P.M.COUTINHO,B.HENRISSAT,J.P.KNOX,A.BASLE, JRNL AUTH 4 S.NAJMUDIN,H.J.GILBERT,W.G.T.WILLATS,C.M.G.A.FONTES JRNL TITL COMPLEXITY OF THE RUMINOCOCCUS FLAVEFACIENS CELLULOSOME JRNL TITL 2 REFLECTS AN EXPANSION IN GLYCAN RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 7136 2016 JRNL REFN ISSN 0027-8424 JRNL PMID 27298375 JRNL DOI 10.1073/PNAS.1601558113 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.VENDITTO,M.S.J.CENTENO,L.M.A.FERREIRA,C.M.G.A.FONTES, REMARK 1 AUTH 2 S.NAJMUDIN REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF A NOVEL REMARK 1 TITL 2 CARBOHYDRATE-BINDING MODULE FROM THE RUMINOCOCCUS REMARK 1 TITL 3 FLAVEFACIENS CELLULOSOME. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 70 1653 2014 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 25484220 REMARK 1 DOI 10.1107/S2053230X14024248 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.80 REMARK 3 NUMBER OF REFLECTIONS : 15301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18542 REMARK 3 R VALUE (WORKING SET) : 0.18233 REMARK 3 FREE R VALUE : 0.24743 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 809 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.276 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.335 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1137 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.244 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.307 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2240 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.284 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01 REMARK 3 B22 (A**2) : 0.01 REMARK 3 B33 (A**2) : -0.03 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.537 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2309 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2174 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3128 ; 1.867 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5068 ; 0.813 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 302 ; 8.830 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;37.955 ;27.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;18.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2599 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 441 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1202 ; 2.912 ; 3.571 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1201 ; 2.906 ; 3.569 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1497 ; 4.462 ; 5.326 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 3.912 ; 3.982 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 587 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0895 54.5949 34.6399 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.0384 REMARK 3 T33: 0.3479 T12: -0.0163 REMARK 3 T13: 0.0071 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.7442 L22: 1.0329 REMARK 3 L33: 0.3773 L12: 0.0515 REMARK 3 L13: -0.2238 L23: -0.4372 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.0228 S13: -0.1246 REMARK 3 S21: 0.0033 S22: 0.1040 S23: 0.1061 REMARK 3 S31: -0.0569 S32: 0.0186 S33: -0.0479 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 439 B 587 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6253 55.3880 52.2294 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.0477 REMARK 3 T33: 0.3874 T12: 0.0844 REMARK 3 T13: -0.0630 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.3944 L22: 0.9651 REMARK 3 L33: 1.4460 L12: -0.1015 REMARK 3 L13: -0.5664 L23: -0.0097 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.0267 S13: -0.1265 REMARK 3 S21: 0.3901 S22: 0.2025 S23: -0.0866 REMARK 3 S31: -0.0873 S32: -0.0468 S33: -0.2378 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4V18 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-14. REMARK 100 THE PDBE ID CODE IS EBI-61821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96112 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16115 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.28 REMARK 200 RESOLUTION RANGE LOW (A) : 77.13 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.2 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.40 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.4 REMARK 200 R MERGE FOR SHELL (I) : 0.54 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSOL PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M AMMONIUM SULFATE, 24% REMARK 280 (W/V) POLYETHYLENE GLYCOL 3350. CRYO 30% GLYCEROL ADDED TO REMARK 280 ABOVE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.84300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.01447 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.90367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.84300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.01447 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.90367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.84300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.01447 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.90367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.84300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.01447 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.90367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.84300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.01447 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.90367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.84300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.01447 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.90367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.02895 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.80733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.02895 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.80733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.02895 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 69.80733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.02895 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.80733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.02895 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 69.80733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.02895 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 69.80733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2059 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 436 REMARK 465 GLU A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 MSE B 436 REMARK 465 GLY B 437 REMARK 465 LEU B 438 REMARK 465 LEU B 587 REMARK 465 GLU B 588 REMARK 465 HIS B 589 REMARK 465 HIS B 590 REMARK 465 HIS B 591 REMARK 465 HIS B 592 REMARK 465 HIS B 593 REMARK 465 HIS B 594 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 587 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 585 N LEU A 587 1.95 REMARK 500 NZ A LYS B 446 O HOH B 2002 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2018 O HOH A 2075 3565 2.15 REMARK 500 O HOH B 2015 O HOH B 2015 17555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 480 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 MSE A 513 CG - SE - CE ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 438 -23.45 -173.85 REMARK 500 SER A 453 -110.24 -95.25 REMARK 500 GLU A 454 68.78 -68.10 REMARK 500 ASP A 491 69.15 22.27 REMARK 500 TRP A 554 -66.20 -92.55 REMARK 500 ALA A 586 65.27 -54.47 REMARK 500 PRO B 440 126.75 -38.98 REMARK 500 LEU B 441 156.78 170.76 REMARK 500 ALA B 442 -153.16 54.28 REMARK 500 SER B 453 -70.04 -104.13 REMARK 500 GLU B 454 26.00 -68.31 REMARK 500 PHE B 479 136.13 -173.86 REMARK 500 SER B 573 122.04 171.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 438 ALA A 439 147.46 REMARK 500 PRO B 440 LEU B 441 52.31 REMARK 500 ALA B 442 ASP B 443 -39.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V17 RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM REMARK 900 GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS REMARK 900 FLAVEFACIENS FD-1 REMARK 900 RELATED ID: 4V1B RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM REMARK 900 GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS REMARK 900 FLAVEFACIENS FD-1 COLLECTED AT THE ZN EDGE REMARK 900 RELATED ID: 4V1I RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM REMARK 900 GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS REMARK 900 FLAVEFACIENS FD-1 AT MEDIUM RESOLUTION REMARK 900 RELATED ID: 4V1K RELATED DB: PDB REMARK 900 SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE REMARK 900 FROM GLYCOSIDE HYDROLASE FAMILY 9 (CEL9A) FROM REMARK 900 RUMINOCOCCUS FLAVEFACIENS FD-1 REMARK 900 RELATED ID: 4V1L RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF A NOVEL CARBOHYDRATE REMARK 900 BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 9 (CEL9A REMARK 900 ) FROM RUMINOCOCCUS FLAVEFACIENS FD-1 DBREF 4V18 A 436 594 PDB 4V18 4V18 436 594 DBREF 4V18 B 436 594 PDB 4V18 4V18 436 594 SEQRES 1 A 159 MSE GLY LEU ALA PRO LEU ALA ASP GLY GLU LYS LEU TYR SEQRES 2 A 159 GLY LYS LYS GLY SER GLU GLY THR VAL THR PHE THR LYS SEQRES 3 A 159 ALA ILE GLY ASP ASN ALA PHE VAL GLU ILE LYS THR GLY SEQRES 4 A 159 ALA ASP THR GLY PHE MSE ASN GLY CYS LEU GLY PHE SER SEQRES 5 A 159 GLU SER ILE ASP GLY LYS ASN TYR TRP VAL ALA TYR VAL SEQRES 6 A 159 TRP GLN THR LYS LYS SER ASP THR ILE SER ILE ASP MSE SEQRES 7 A 159 SER SER PRO VAL GLN ILE ALA GLU ILE ILE GLY THR GLU SEQRES 8 A 159 THR GLN GLU VAL THR ASP ALA ASP THR ILE LYS LYS LEU SEQRES 9 A 159 THR ASP LYS ILE LYS THR GLU LYS SER ALA LEU LEU GLN SEQRES 10 A 159 VAL TRP TYR ALA SER ASP LYS THR GLY LYS GLN ILE ASP SEQRES 11 A 159 PRO ALA ASP SER ALA SER GLU SER ILE GLU VAL TYR ILE SEQRES 12 A 159 PRO SER ALA SER ALA ASP GLU ALA LEU GLU HIS HIS HIS SEQRES 13 A 159 HIS HIS HIS SEQRES 1 B 159 MSE GLY LEU ALA PRO LEU ALA ASP GLY GLU LYS LEU TYR SEQRES 2 B 159 GLY LYS LYS GLY SER GLU GLY THR VAL THR PHE THR LYS SEQRES 3 B 159 ALA ILE GLY ASP ASN ALA PHE VAL GLU ILE LYS THR GLY SEQRES 4 B 159 ALA ASP THR GLY PHE MSE ASN GLY CYS LEU GLY PHE SER SEQRES 5 B 159 GLU SER ILE ASP GLY LYS ASN TYR TRP VAL ALA TYR VAL SEQRES 6 B 159 TRP GLN THR LYS LYS SER ASP THR ILE SER ILE ASP MSE SEQRES 7 B 159 SER SER PRO VAL GLN ILE ALA GLU ILE ILE GLY THR GLU SEQRES 8 B 159 THR GLN GLU VAL THR ASP ALA ASP THR ILE LYS LYS LEU SEQRES 9 B 159 THR ASP LYS ILE LYS THR GLU LYS SER ALA LEU LEU GLN SEQRES 10 B 159 VAL TRP TYR ALA SER ASP LYS THR GLY LYS GLN ILE ASP SEQRES 11 B 159 PRO ALA ASP SER ALA SER GLU SER ILE GLU VAL TYR ILE SEQRES 12 B 159 PRO SER ALA SER ALA ASP GLU ALA LEU GLU HIS HIS HIS SEQRES 13 B 159 HIS HIS HIS MODRES 4V18 MSE A 480 MET SELENOMETHIONINE MODRES 4V18 MSE A 513 MET SELENOMETHIONINE MODRES 4V18 MSE B 480 MET SELENOMETHIONINE MODRES 4V18 MSE B 513 MET SELENOMETHIONINE HET MSE A 480 8 HET MSE A 513 8 HET MSE B 480 8 HET MSE B 513 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 4(C5 H11 N O2 SE) FORMUL 4 HOH *104(H2 O) HELIX 1 1 ALA A 442 GLY A 444 5 3 HELIX 2 2 ASP A 532 LYS A 544 1 13 HELIX 3 3 PRO A 566 SER A 569 5 4 HELIX 4 4 SER A 580 ALA A 586 1 7 HELIX 5 5 ASP B 532 LYS B 544 1 13 HELIX 6 6 PRO B 566 SER B 569 5 4 HELIX 7 7 SER B 580 ALA B 586 1 7 SHEET 1 AA 4 LYS A 446 TYR A 448 0 SHEET 2 AA 4 SER A 571 PRO A 579 -1 O ILE A 578 N LEU A 447 SHEET 3 AA 4 ASN A 466 THR A 473 -1 O PHE A 468 N TYR A 577 SHEET 4 AA 4 ASP A 507 ASP A 512 -1 O ASP A 507 N ILE A 471 SHEET 1 AB 7 LYS A 450 LYS A 451 0 SHEET 2 AB 7 THR A 456 THR A 458 -1 O THR A 458 N LYS A 450 SHEET 3 AB 7 SER A 548 ASP A 558 -1 O ALA A 549 N VAL A 457 SHEET 4 AB 7 THR A 477 ILE A 490 -1 N GLY A 478 O SER A 557 SHEET 5 AB 7 LYS A 493 THR A 503 -1 O LYS A 493 N ILE A 490 SHEET 6 AB 7 GLN A 518 ILE A 523 -1 O GLN A 518 N ALA A 498 SHEET 7 AB 7 GLU A 526 GLU A 529 -1 O GLU A 526 N ILE A 523 SHEET 1 BA 4 LYS B 446 TYR B 448 0 SHEET 2 BA 4 SER B 571 PRO B 579 -1 O ILE B 578 N LEU B 447 SHEET 3 BA 4 ASN B 466 THR B 473 -1 O PHE B 468 N TYR B 577 SHEET 4 BA 4 ASP B 507 ASP B 512 -1 O ASP B 507 N ILE B 471 SHEET 1 BB 7 LYS B 450 LYS B 451 0 SHEET 2 BB 7 THR B 456 THR B 458 -1 O THR B 458 N LYS B 450 SHEET 3 BB 7 SER B 548 ASP B 558 -1 O ALA B 549 N VAL B 457 SHEET 4 BB 7 THR B 477 ILE B 490 -1 N GLY B 478 O SER B 557 SHEET 5 BB 7 LYS B 493 THR B 503 -1 O LYS B 493 N ILE B 490 SHEET 6 BB 7 GLN B 518 ILE B 523 -1 O GLN B 518 N ALA B 498 SHEET 7 BB 7 GLU B 526 GLU B 529 -1 O GLU B 526 N ILE B 523 LINK C PHE A 479 N MSE A 480 1555 1555 1.34 LINK C MSE A 480 N ASN A 481 1555 1555 1.32 LINK C ASP A 512 N MSE A 513 1555 1555 1.34 LINK C MSE A 513 N SER A 514 1555 1555 1.33 LINK C PHE B 479 N MSE B 480 1555 1555 1.32 LINK C MSE B 480 N ASN B 481 1555 1555 1.32 LINK C ASP B 512 N MSE B 513 1555 1555 1.33 LINK C MSE B 513 N SER B 514 1555 1555 1.33 CISPEP 1 ASP A 565 PRO A 566 0 -7.45 CISPEP 2 ASP B 565 PRO B 566 0 0.56 CRYST1 131.686 131.686 104.711 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007594 0.004384 0.000000 0.00000 SCALE2 0.000000 0.008769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009550 0.00000