HEADER SUGAR BINDING PROTEIN 25-SEP-14 4V1B TITLE STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE TITLE 2 HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 TITLE 3 COLLECTED AT THE ZN EDGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE BINDING MODULE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS FLAVEFACIENS; SOURCE 3 ORGANISM_TAXID: 641112; SOURCE 4 STRAIN: FD-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS SUGAR BINDING PROTEIN, CELLULOSOME EXPDTA X-RAY DIFFRACTION AUTHOR I.VENDITTO,M.S.J.CENTENO,L.M.A.FERREIRA,C.M.G.A.FONTES,S.NAJMUDIN REVDAT 3 10-JAN-24 4V1B 1 REMARK REVDAT 2 27-JUL-16 4V1B 1 JRNL REVDAT 1 20-JAN-16 4V1B 0 JRNL AUTH I.VENDITTO,A.S.LUIS,M.RYDAHL,J.SCHUCKEL,V.O.FERNANDES, JRNL AUTH 2 S.VIDAL-MELGOSA,P.BULE,A.GOYAL,V.M.R.PIRES,C.G.DOURADO, JRNL AUTH 3 L.M.A.FERREIRA,P.M.COUTINHO,B.HENRISSAT,J.P.KNOX,A.BASLE, JRNL AUTH 4 S.NAJMUDIN,H.J.GILBERT,W.G.T.WILLATS,C.M.G.A.FONTES JRNL TITL COMPLEXITY OF THE RUMINOCOCCUS FLAVEFACIENS CELLULOSOME JRNL TITL 2 REFLECTS AN EXPANSION IN GLYCAN RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 7136 2016 JRNL REFN ISSN 0027-8424 JRNL PMID 27298375 JRNL DOI 10.1073/PNAS.1601558113 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.VENDITTO,M.S.J.CENTENO,L.M.A.FERREIRA,C.M.G.A.FONTES, REMARK 1 AUTH 2 S.NAJMUDIN REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF A NOVEL REMARK 1 TITL 2 CARBOHYDRATE-BINDING MODULE FROM THE RUMINOCOCCUS REMARK 1 TITL 3 FLAVEFACIENS CELLULOSOME. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 70 1653 2014 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 25484220 REMARK 1 DOI 10.1107/S2053230X14024248 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 695 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.54000 REMARK 3 B22 (A**2) : -3.54000 REMARK 3 B33 (A**2) : 11.48000 REMARK 3 B12 (A**2) : -1.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.482 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2302 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2165 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3116 ; 0.992 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5045 ; 0.798 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.329 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;34.051 ;27.273 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;15.168 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 362 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2578 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 2.670 ; 4.365 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1197 ; 2.666 ; 4.364 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1494 ; 4.181 ; 6.542 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 3.886 ; 4.794 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 587 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4190 -21.5640 -35.2070 REMARK 3 T TENSOR REMARK 3 T11: 0.2864 T22: 0.1648 REMARK 3 T33: 0.0545 T12: 0.0235 REMARK 3 T13: -0.0141 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 3.9158 L22: 3.7677 REMARK 3 L33: 1.6622 L12: 0.3157 REMARK 3 L13: -0.5311 L23: -0.3765 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: -0.1862 S13: -0.3854 REMARK 3 S21: 0.1558 S22: 0.1010 S23: 0.0568 REMARK 3 S31: -0.0402 S32: 0.0306 S33: -0.0564 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 438 B 586 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4450 -20.9210 -17.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.6125 T22: 0.4568 REMARK 3 T33: 0.1414 T12: 0.0370 REMARK 3 T13: -0.0947 T23: 0.2095 REMARK 3 L TENSOR REMARK 3 L11: 4.2607 L22: 2.9599 REMARK 3 L33: 2.5564 L12: 0.1727 REMARK 3 L13: -0.1700 L23: 0.5008 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: -0.6120 S13: -0.4436 REMARK 3 S21: 0.7150 S22: 0.2146 S23: -0.1673 REMARK 3 S31: -0.1012 S32: -0.0281 S33: -0.1795 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4V1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2855 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9947 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 66.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 19.00 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4V18 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M K2SO4, 20% PEG 3350. CRYO 30% REMARK 280 GLYCEROL IN THE ABOVE CONDITION, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 66.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.18017 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 34.99000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 66.13000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.18017 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 34.99000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 66.13000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.18017 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 34.99000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 66.13000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.18017 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.99000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 66.13000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.18017 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 34.99000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 66.13000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.18017 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.99000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.36035 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 69.98000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.36035 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 69.98000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.36035 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 69.98000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.36035 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 69.98000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.36035 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 69.98000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.36035 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 69.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 436 REMARK 465 GLU A 588 REMARK 465 HIS A 589 REMARK 465 HIS A 590 REMARK 465 HIS A 591 REMARK 465 HIS A 592 REMARK 465 HIS A 593 REMARK 465 HIS A 594 REMARK 465 MET B 436 REMARK 465 GLY B 437 REMARK 465 GLU B 588 REMARK 465 HIS B 589 REMARK 465 HIS B 590 REMARK 465 HIS B 591 REMARK 465 HIS B 592 REMARK 465 HIS B 593 REMARK 465 HIS B 594 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 587 CA C O CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PRO B 440 O PRO B 440 6555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 585 C ALA A 586 N -0.291 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 438 -26.02 -157.92 REMARK 500 SER A 453 -70.64 -72.90 REMARK 500 GLU A 454 41.34 -74.52 REMARK 500 ASP A 491 73.51 26.50 REMARK 500 TRP A 554 -62.63 -98.89 REMARK 500 ALA A 586 49.58 -75.84 REMARK 500 ASP B 443 41.37 -78.98 REMARK 500 ASP B 491 73.14 26.81 REMARK 500 TRP B 554 -62.75 -98.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V17 RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 5 GLUCANSE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 REMARK 900 RELATED ID: 4V18 RELATED DB: PDB REMARK 900 SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM REMARK 900 GLYCOSIDE HYDROLASE FAMILY 5 GLUCANSE FROM RUMINOCOCCUS REMARK 900 FLAVEFACIENS FD-1 REMARK 900 RELATED ID: 4V1I RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 AT REMARK 900 MEDIUM RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 GB WP009983134 DBREF 4V1B A 436 594 PDB 4V1B 4V1B 436 594 DBREF 4V1B B 436 594 PDB 4V1B 4V1B 436 594 SEQRES 1 A 159 MET GLY LEU ALA PRO LEU ALA ASP GLY GLU LYS LEU TYR SEQRES 2 A 159 GLY LYS LYS GLY SER GLU GLY THR VAL THR PHE THR LYS SEQRES 3 A 159 ALA ILE GLY ASP ASN ALA PHE VAL GLU ILE LYS THR GLY SEQRES 4 A 159 ALA ASP THR GLY PHE MET ASN GLY CYS LEU GLY PHE SER SEQRES 5 A 159 GLU SER ILE ASP GLY LYS ASN TYR TRP VAL ALA TYR VAL SEQRES 6 A 159 TRP GLN THR LYS LYS SER ASP THR ILE SER ILE ASP MET SEQRES 7 A 159 SER SER PRO VAL GLN ILE ALA GLU ILE ILE GLY THR GLU SEQRES 8 A 159 THR GLN GLU VAL THR ASP ALA ASP THR ILE LYS LYS LEU SEQRES 9 A 159 THR ASP LYS ILE LYS THR GLU LYS SER ALA LEU LEU GLN SEQRES 10 A 159 VAL TRP TYR ALA SER ASP LYS THR GLY LYS GLN ILE ASP SEQRES 11 A 159 PRO ALA ASP SER ALA SER GLU SER ILE GLU VAL TYR ILE SEQRES 12 A 159 PRO SER ALA SER ALA ASP GLU ALA LEU GLU HIS HIS HIS SEQRES 13 A 159 HIS HIS HIS SEQRES 1 B 159 MET GLY LEU ALA PRO LEU ALA ASP GLY GLU LYS LEU TYR SEQRES 2 B 159 GLY LYS LYS GLY SER GLU GLY THR VAL THR PHE THR LYS SEQRES 3 B 159 ALA ILE GLY ASP ASN ALA PHE VAL GLU ILE LYS THR GLY SEQRES 4 B 159 ALA ASP THR GLY PHE MET ASN GLY CYS LEU GLY PHE SER SEQRES 5 B 159 GLU SER ILE ASP GLY LYS ASN TYR TRP VAL ALA TYR VAL SEQRES 6 B 159 TRP GLN THR LYS LYS SER ASP THR ILE SER ILE ASP MET SEQRES 7 B 159 SER SER PRO VAL GLN ILE ALA GLU ILE ILE GLY THR GLU SEQRES 8 B 159 THR GLN GLU VAL THR ASP ALA ASP THR ILE LYS LYS LEU SEQRES 9 B 159 THR ASP LYS ILE LYS THR GLU LYS SER ALA LEU LEU GLN SEQRES 10 B 159 VAL TRP TYR ALA SER ASP LYS THR GLY LYS GLN ILE ASP SEQRES 11 B 159 PRO ALA ASP SER ALA SER GLU SER ILE GLU VAL TYR ILE SEQRES 12 B 159 PRO SER ALA SER ALA ASP GLU ALA LEU GLU HIS HIS HIS SEQRES 13 B 159 HIS HIS HIS FORMUL 3 HOH *4(H2 O) HELIX 1 1 ALA A 442 GLY A 444 5 3 HELIX 2 2 ASP A 532 LYS A 544 1 13 HELIX 3 3 PRO A 566 SER A 569 5 4 HELIX 4 4 SER A 580 ALA A 586 1 7 HELIX 5 5 ASP B 532 LYS B 544 1 13 HELIX 6 6 PRO B 566 SER B 569 5 4 HELIX 7 7 SER B 580 GLU B 585 1 6 SHEET 1 AA 4 LYS A 446 TYR A 448 0 SHEET 2 AA 4 SER A 571 PRO A 579 -1 O ILE A 578 N LEU A 447 SHEET 3 AA 4 ASN A 466 THR A 473 -1 O PHE A 468 N TYR A 577 SHEET 4 AA 4 ASP A 507 ASP A 512 -1 O ASP A 507 N ILE A 471 SHEET 1 AB 7 LYS A 450 LYS A 451 0 SHEET 2 AB 7 THR A 456 THR A 458 -1 O THR A 458 N LYS A 450 SHEET 3 AB 7 SER A 548 ASP A 558 -1 O ALA A 549 N VAL A 457 SHEET 4 AB 7 THR A 477 ILE A 490 -1 N GLY A 478 O SER A 557 SHEET 5 AB 7 LYS A 493 THR A 503 -1 O LYS A 493 N ILE A 490 SHEET 6 AB 7 GLN A 518 ILE A 523 -1 O GLN A 518 N ALA A 498 SHEET 7 AB 7 GLU A 526 GLU A 529 -1 O GLU A 526 N ILE A 523 SHEET 1 BA 4 LYS B 446 TYR B 448 0 SHEET 2 BA 4 SER B 571 PRO B 579 -1 O ILE B 578 N LEU B 447 SHEET 3 BA 4 ASN B 466 THR B 473 -1 O PHE B 468 N TYR B 577 SHEET 4 BA 4 ASP B 507 ASP B 512 -1 O ASP B 507 N ILE B 471 SHEET 1 BB 7 LYS B 450 LYS B 451 0 SHEET 2 BB 7 THR B 456 THR B 458 -1 O THR B 458 N LYS B 450 SHEET 3 BB 7 SER B 548 ASP B 558 -1 O ALA B 549 N VAL B 457 SHEET 4 BB 7 THR B 477 ILE B 490 -1 N GLY B 478 O SER B 557 SHEET 5 BB 7 LYS B 493 THR B 503 -1 O LYS B 493 N ILE B 490 SHEET 6 BB 7 GLN B 518 ILE B 523 -1 O GLN B 518 N ALA B 498 SHEET 7 BB 7 GLU B 526 GLU B 529 -1 O GLU B 526 N ILE B 523 CISPEP 1 ASP A 565 PRO A 566 0 -1.85 CISPEP 2 ASP B 565 PRO B 566 0 -1.89 CRYST1 132.260 132.260 104.970 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007561 0.004365 0.000000 0.00000 SCALE2 0.000000 0.008731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009527 0.00000