HEADER SUGAR BINDING PROTEIN 29-SEP-14 4V1K TITLE SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE TITLE 2 HYDROLASE FAMILY 9 (CEL9A) FROM RUMINOCOCCUS FLAVEFACIENS FD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE BINDING MODULE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 492-629; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SELENOMETHIONINE DERIVATIVE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS FLAVEFACIENS; SOURCE 3 ORGANISM_TAXID: 641112; SOURCE 4 STRAIN: FD-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS SUGAR BINDING PROTEIN, CARBOHYDRATE BINDING MODULE, GLYCOSIDE KEYWDS 2 HYDROLASE FAMILY 9, CEL9A, CELLULOSOME, RUMINOCOCCUS FLAVEFACIENS KEYWDS 3 FD-1 EXPDTA X-RAY DIFFRACTION AUTHOR I.VENDITTO,A.GOYAL,A.THOMPSON,L.M.A.FERREIRA,C.M.G.A.FONTES, AUTHOR 2 S.NAJMUDIN REVDAT 4 07-FEB-18 4V1K 1 SOURCE JRNL REMARK REVDAT 3 13-JUL-16 4V1K 1 JRNL REVDAT 2 29-JUN-16 4V1K 1 JRNL REVDAT 1 20-JAN-16 4V1K 0 JRNL AUTH I.VENDITTO,A.S.LUIS,M.RYDAHL,J.SCHUCKEL,V.O.FERNANDES, JRNL AUTH 2 S.VIDAL-MELGOSA,P.BULE,A.GOYAL,V.M.R.PIRES,C.G.DOURADO, JRNL AUTH 3 L.M.A.FERREIRA,P.M.COUTINHO,B.HENRISSAT,J.P.KNOX,A.BASLE, JRNL AUTH 4 S.NAJMUDIN,H.J.GILBERT,W.G.T.WILLATS,C.M.G.A.FONTES JRNL TITL COMPLEXITY OF THE RUMINOCOCCUS FLAVEFACIENS CELLULOSOME JRNL TITL 2 REFLECTS AN EXPANSION IN GLYCAN RECOGNITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 7136 2016 JRNL REFN ISSN 0027-8424 JRNL PMID 27298375 JRNL DOI 10.1073/PNAS.1601558113 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.VENDITTO,M.S.J.CENTENO,L.M.A.FERREIRA,C.M.G.A.FONTES, REMARK 1 AUTH 2 S.NAJMUDIN REMARK 1 TITL EXPRESSION, PURIFICATION AND CRYSTALLIZATION OF A NOVEL REMARK 1 TITL 2 CARBOHYDRATE-BINDING MODULE FROM THE RUMINOCOCCUS REMARK 1 TITL 3 FLAVEFACIENS CELLULOSOME. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 70 1653 2014 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 25484220 REMARK 1 DOI 10.1107/S2053230X14024248 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 22809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.120 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1653 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1530 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1149 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1081 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1549 ; 1.713 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2530 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 6.649 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;39.063 ;26.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 191 ;13.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 1 ;37.546 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 168 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1271 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 244 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 546 ; 1.998 ; 2.119 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 545 ; 1.974 ; 2.113 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 687 ; 2.747 ; 3.193 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 688 ; 2.756 ; 3.202 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 602 ; 3.064 ; 2.729 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 603 ; 3.064 ; 2.732 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 854 ; 3.662 ; 3.841 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1314 ; 4.632 ;19.837 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1314 ; 4.628 ;19.838 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2228 ; 3.792 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 46 ;22.299 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2301 ;10.936 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 494 A 624 REMARK 3 ORIGIN FOR THE GROUP (A): 43.6473 66.4378 76.4152 REMARK 3 T TENSOR REMARK 3 T11: 0.0014 T22: 0.0006 REMARK 3 T33: 0.0014 T12: -0.0002 REMARK 3 T13: -0.0001 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1106 L22: 0.0544 REMARK 3 L33: 0.1217 L12: 0.0223 REMARK 3 L13: -0.0869 L23: -0.0237 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.0028 S13: -0.0083 REMARK 3 S21: -0.0015 S22: 0.0051 S23: 0.0002 REMARK 3 S31: 0.0077 S32: 0.0000 S33: 0.0027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4V1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1290061873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24839 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 42.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 1.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE, CCP4 SUITES REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: DATA WAS ALSO COLLECTED AT THE SE-PEAK EDGE WITH AN REMARK 200 INVERSE BEAM. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 1.5 M K2HPO4, REMARK 280 1.5 M NAH2PO4 CRYO USED WAS PARATONE-N., PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.02550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.02550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.02550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.02550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.02550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.02550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 52.02550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 52.02550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 52.02550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 52.02550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 52.02550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 52.02550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 52.02550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 52.02550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 52.02550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2009 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2085 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2086 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 492 REMARK 465 ALA A 493 REMARK 465 HIS A 625 REMARK 465 HIS A 626 REMARK 465 HIS A 627 REMARK 465 HIS A 628 REMARK 465 HIS A 629 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2100 O HOH A 2101 1.89 REMARK 500 O HOH A 2134 O HOH A 2135 1.93 REMARK 500 O HOH A 2049 O HOH A 2124 2.03 REMARK 500 O HOH A 2083 O HOH A 2084 2.04 REMARK 500 OE1 GLN A 572 O HOH A 2104 2.14 REMARK 500 O SER A 508 O HOH A 2023 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2023 O HOH A 2100 8656 1.42 REMARK 500 O1 BGQ A 1630 O1 BGQ A 1630 8656 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 558 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 558 CB - CG - OD2 ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 623 -92.54 -96.30 REMARK 500 GLU A 623 -108.73 -86.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1627 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 2PE A1625 O13 REMARK 620 2 2PE A1625 O16 61.7 REMARK 620 3 2PE A1625 O19 117.8 58.9 REMARK 620 4 2PE A1625 O22 98.5 84.8 60.1 REMARK 620 5 2PE A1625 O10 61.6 122.5 172.8 112.7 REMARK 620 6 2PE A1625 O4 156.4 121.0 76.1 105.0 107.1 REMARK 620 7 2PE A1625 O7 118.2 168.0 116.0 83.4 61.1 64.5 REMARK 620 8 HOH A2074 O 76.3 82.8 112.0 167.6 75.1 80.8 109.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1628 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 P6G A1626 O13 REMARK 620 2 P6G A1626 O16 61.9 REMARK 620 3 P6G A1626 O10 63.3 97.8 REMARK 620 4 P6G A1626 O7 124.9 120.6 61.9 REMARK 620 5 P6G A1626 O4 169.6 108.9 115.8 54.1 REMARK 620 6 P6G A1626 O1 120.6 94.0 167.8 114.2 62.7 REMARK 620 7 HOH A2144 O 71.0 48.5 58.7 76.4 99.5 133.0 REMARK 620 8 HOH A2143 O 85.0 51.5 145.1 143.9 92.7 44.8 98.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1629 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BGQ A1630 O1 REMARK 620 2 BGQ A1630 O1 43.7 REMARK 620 3 BGQ A1630 O1 43.7 43.7 REMARK 620 4 BGQ A1630 O1 43.7 43.7 0.0 REMARK 620 5 BGQ A1630 O1 43.7 43.7 0.0 0.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1627 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1628 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1629 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BGQ A 1630 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: Binding site for residues 2PE A1625 and P6G REMARK 800 A1626 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V17 RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 REMARK 900 RELATED ID: 4V18 RELATED DB: PDB REMARK 900 SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM REMARK 900 GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS REMARK 900 FLAVEFACIENS FD-1 REMARK 900 RELATED ID: 4V1B RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 REMARK 900 COLLECTED AT THE ZN EDGE REMARK 900 RELATED ID: 4V1I RELATED DB: PDB REMARK 900 STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE REMARK 900 HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 AT REMARK 900 MEDIUM RESOLUTION REMARK 900 RELATED ID: 4V1L RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE REMARK 900 FROM GLYCOSIDE HYDROLASE FAMILY 9 (CEL9A ) FROM RUMINOCOCCUS REMARK 900 FLAVEFACIENS FD-1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SELENOMETHIONINE DERIVATIVE DBREF 4V1K A 492 629 PDB 4V1K 4V1K 492 629 SEQRES 1 A 138 MSE ALA SER ASP GLY TYR THR ILE LYS PRO ASN LYS LYS SEQRES 2 A 138 VAL THR TYR SER ALA LEU GLY GLU ASP GLU ARG MSE ILE SEQRES 3 A 138 GLY PHE SER TYR LYS ASP PHE GLY ILE SER SER SER GLU SEQRES 4 A 138 LYS ILE THR GLU VAL GLN VAL ASN ILE SER ALA ASN LYS SEQRES 5 A 138 ASN ILE GLY LYS TYR VAL GLY GLN PHE GLY THR SER THR SEQRES 6 A 138 THR ASP SER ALA ASN GLY TYR TRP ALA MSE GLY ASP GLU SEQRES 7 A 138 ILE THR GLN SER ILE SER GLY ASN SER GLY THR ILE THR SEQRES 8 A 138 TRP LYS VAL PRO SER ASP ILE SER SER ILE ILE GLN THR SEQRES 9 A 138 GLN TYR GLY GLY GLU ILE LYS PHE GLY VAL TRP TRP ILE SEQRES 10 A 138 ASP CYS ASP GLU PHE THR ILE ASP SER VAL VAL LEU LYS SEQRES 11 A 138 LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4V1K MSE A 516 MET SELENOMETHIONINE MODRES 4V1K MSE A 566 MET SELENOMETHIONINE HET MSE A 516 8 HET MSE A 566 8 HET 2PE A1625 27 HET P6G A1626 19 HET CA A1627 1 HET CA A1628 1 HET CA A1629 1 HET BGQ A1630 7 HETNAM MSE SELENOMETHIONINE HETNAM 2PE NONAETHYLENE GLYCOL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM CA CALCIUM ION HETNAM BGQ 2-HYDROXY BUTANE-1,4-DIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 2PE C18 H38 O10 FORMUL 3 P6G C12 H26 O7 FORMUL 4 CA 3(CA 2+) FORMUL 7 BGQ C4 H9 O3 FORMUL 8 HOH *144(H2 O) HELIX 1 1 SER A 508 LEU A 510 5 3 HELIX 2 2 GLY A 511 GLU A 514 5 4 HELIX 3 3 LYS A 522 PHE A 524 5 3 HELIX 4 4 ASP A 558 GLY A 562 5 5 HELIX 5 5 PRO A 586 SER A 591 1 6 SHEET 1 AA 2 GLY A 496 ILE A 499 0 SHEET 2 AA 2 GLU A 612 LEU A 622 -1 O VAL A 618 N ILE A 499 SHEET 1 AB 2 LYS A 503 THR A 506 0 SHEET 2 AB 2 GLU A 612 LEU A 622 1 O PHE A 613 N VAL A 505 SHEET 1 AC 4 SER A 578 LYS A 584 0 SHEET 2 AC 4 ILE A 532 SER A 540 -1 O VAL A 535 N TRP A 583 SHEET 3 AC 4 GLU A 612 LEU A 622 -1 O THR A 614 N SER A 540 SHEET 4 AC 4 LYS A 503 THR A 506 1 O LYS A 503 N ILE A 615 SHEET 1 AD 4 SER A 578 LYS A 584 0 SHEET 2 AD 4 ILE A 532 SER A 540 -1 O VAL A 535 N TRP A 583 SHEET 3 AD 4 GLU A 612 LEU A 622 -1 O THR A 614 N SER A 540 SHEET 4 AD 4 GLY A 496 ILE A 499 -1 O TYR A 497 N LEU A 620 SHEET 1 AE 4 MSE A 516 SER A 520 0 SHEET 2 AE 4 GLU A 600 ILE A 608 -1 O ILE A 601 N PHE A 519 SHEET 3 AE 4 GLY A 546 SER A 555 -1 O VAL A 549 N TRP A 606 SHEET 4 AE 4 TRP A 564 MSE A 566 -1 O ALA A 565 N THR A 554 SHEET 1 AF 4 MSE A 516 SER A 520 0 SHEET 2 AF 4 GLU A 600 ILE A 608 -1 O ILE A 601 N PHE A 519 SHEET 3 AF 4 GLY A 546 SER A 555 -1 O VAL A 549 N TRP A 606 SHEET 4 AF 4 ILE A 570 ILE A 574 -1 O ILE A 570 N GLY A 550 SHEET 1 AG 2 TRP A 564 MSE A 566 0 SHEET 2 AG 2 GLY A 546 SER A 555 -1 O THR A 554 N ALA A 565 LINK C ARG A 515 N MSE A 516 1555 1555 1.33 LINK C MSE A 516 N ILE A 517 1555 1555 1.32 LINK C ALA A 565 N MSE A 566 1555 1555 1.33 LINK C MSE A 566 N GLY A 567 1555 1555 1.34 LINK O13 2PE A1625 CA CA A1627 1555 1555 2.80 LINK O16 2PE A1625 CA CA A1627 1555 1555 2.73 LINK O19 2PE A1625 CA CA A1627 1555 1555 2.71 LINK O22 2PE A1625 CA CA A1627 1555 1555 2.86 LINK O10 2PE A1625 CA CA A1627 1555 1555 2.80 LINK C2 2PE A1625 O19 P6G A1626 1555 1555 1.34 LINK O4 2PE A1625 CA CA A1627 1555 1555 2.79 LINK O7 2PE A1625 CA CA A1627 1555 1555 2.74 LINK O13 P6G A1626 CA CA A1628 1555 1555 2.71 LINK O16 P6G A1626 CA CA A1628 1555 1555 2.82 LINK O10 P6G A1626 CA CA A1628 1555 1555 3.16 LINK O7 P6G A1626 CA CA A1628 1555 1555 3.18 LINK O4 P6G A1626 CA CA A1628 1555 1555 2.53 LINK O1 P6G A1626 CA CA A1628 1555 1555 3.09 LINK CA CA A1627 O HOH A2074 1555 1555 2.82 LINK CA CA A1628 O HOH A2144 1555 1555 3.10 LINK CA CA A1628 O HOH A2143 1555 1555 3.18 LINK CA CA A1629 O1 BGQ A1630 1555 8656 2.86 LINK CA CA A1629 O1 BGQ A1630 1555 11466 2.85 LINK CA CA A1629 O1 BGQ A1630 11466 1555 2.86 LINK CA CA A1629 O1 BGQ A1630 8656 1555 2.85 LINK CA CA A1629 O1 BGQ A1630 1555 1555 2.85 SITE 1 AC1 2 2PE A1625 HOH A2074 SITE 1 AC2 1 P6G A1626 SITE 1 AC3 1 BGQ A1630 SITE 1 AC4 2 TRP A 607 CA A1629 SITE 1 AC5 13 GLU A 512 ASP A 513 SER A 555 GLY A 562 SITE 2 AC5 13 TYR A 563 TRP A 564 TYR A 597 GLY A 598 SITE 3 AC5 13 CA A1627 CA A1628 HOH A2075 HOH A2143 SITE 4 AC5 13 HOH A2144 CRYST1 104.051 104.051 104.051 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009611 0.00000