HEADER HYDROLASE 04-OCT-14 4V1Z TITLE THE 3-D STRUCTURE OF THE CELLOBIOHYDROLASE, CEL7A, FROM ASPERGILLUS TITLE 2 FUMIGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLOBIOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-466; COMPND 5 SYNONYM: BETA-GLUCANCELLOBIOHYDROLASE B, EXOCELLOBIOHYDROLASE B, COMPND 6 EXOGLUCANASE B; COMPND 7 EC: 3.2.1.91; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 746128; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS HYDROLASE, CELLULASE, BIOFUELS, CARBOHYDRATE-ACTIVE ENZYME, THERMAL 2 KEYWDS 2 STABILITY EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,M.MARANTA,T.SHAGHASI,P.V.HARRIS,K.S.WILSON,G.J.DAVIES REVDAT 6 10-JAN-24 4V1Z 1 REMARK HETSYN REVDAT 5 29-JUL-20 4V1Z 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 11-MAR-20 4V1Z 1 SEQRES LINK REVDAT 3 25-APR-18 4V1Z 1 REMARK REVDAT 2 04-FEB-15 4V1Z 1 JRNL REVDAT 1 14-JAN-15 4V1Z 0 JRNL AUTH O.V.MOROZ,M.MARANTA,T.SHAGHASI,P.V.HARRIS,K.S.WILSON, JRNL AUTH 2 G.J.DAVIES JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF THE CELLOBIOHYDROLASE JRNL TITL 2 CEL7A FROM ASPERGILLUS FUMIGATUS AT 1.5 A RESOLUTION JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 71 114 2015 JRNL REFN ESSN 1744-3091 JRNL PMID 25615982 JRNL DOI 10.1107/S2053230X14027307 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3216 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.097 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.485 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3538 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3046 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4851 ; 1.792 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7061 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 6.727 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.864 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;13.914 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4273 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 825 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 1.732 ; 1.965 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1852 ; 1.718 ; 1.962 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2346 ; 2.394 ; 2.944 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1685 ; 2.660 ; 2.172 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4V1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290061910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 65.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Q9H REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PACT B12 20% PEG6K, 10 MM ZNCL2, MES REMARK 280 PH 6.0, OPTIMIZED MANUALLY REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.61500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.69500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.61500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.69500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 315 CD CE NZ REMARK 480 GLU A 335 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 1441 O HOH A 2429 1.50 REMARK 500 O HOH A 2288 O HOH A 2289 1.89 REMARK 500 O HOH A 2141 O HOH A 2147 1.96 REMARK 500 NE2 GLN A 2 O HOH A 2006 1.97 REMARK 500 O HOH A 2284 O HOH A 2285 2.06 REMARK 500 O HOH A 2391 O HOH A 2393 2.07 REMARK 500 O HOH A 2092 O HOH A 2231 2.07 REMARK 500 O HOH A 2447 O HOH A 2451 2.14 REMARK 500 OD2 ASP A 214 O HOH A 2289 2.14 REMARK 500 O HOH A 2253 O HOH A 2287 2.15 REMARK 500 O HOH A 2450 O HOH A 2452 2.17 REMARK 500 NE2 HIS A 228 O HOH A 2289 2.17 REMARK 500 OD2 ASP A 250 O HOH A 2325 2.18 REMARK 500 O HOH A 2037 O HOH A 2083 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2100 O HOH A 2447 4455 2.17 REMARK 500 O HOH A 2040 O HOH A 2221 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 82 CE1 TYR A 82 CZ -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 250 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 250 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 420 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 420 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 99 -128.98 -124.90 REMARK 500 SER A 386 -157.98 -138.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1442 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD1 REMARK 620 2 HIS A 418 NE2 99.9 REMARK 620 3 HOH A2088 O 93.9 117.8 REMARK 620 4 HOH A2089 O 94.5 98.5 140.6 REMARK 620 5 HOH A2470 O 144.9 115.2 71.4 79.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1441 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 375 OD1 REMARK 620 2 ASP A 375 OD2 53.6 REMARK 620 3 HIS A 377 NE2 100.8 113.9 REMARK 620 4 GLU A 415 OE2 134.6 86.3 116.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V20 RELATED DB: PDB REMARK 900 THE 3-D STRUCTURE OF THE CELLOBIOHYDROLASE, CEL7A, FROM ASPERGILLUS REMARK 900 FUMIGATUS, DISACCHARIDE COMPLEX DBREF 4V1Z A 1 440 UNP Q4WM08 CBHB_ASPFU 27 466 SEQRES 1 A 440 PCA GLN VAL GLY THR SER GLN ALA GLU VAL HIS PRO SER SEQRES 2 A 440 MET THR TRP GLN SER CYS THR ALA GLY GLY SER CYS THR SEQRES 3 A 440 THR ASN ASN GLY LYS VAL VAL ILE ASP ALA ASN TRP ARG SEQRES 4 A 440 TRP VAL HIS LYS VAL GLY ASP TYR THR ASN CYS TYR THR SEQRES 5 A 440 GLY ASN THR TRP ASP THR THR ILE CYS PRO ASP ASP ALA SEQRES 6 A 440 THR CYS ALA SER ASN CYS ALA LEU GLU GLY ALA ASN TYR SEQRES 7 A 440 GLU SER THR TYR GLY VAL THR ALA SER GLY ASN SER LEU SEQRES 8 A 440 ARG LEU ASN PHE VAL THR THR SER GLN GLN LYS ASN ILE SEQRES 9 A 440 GLY SER ARG LEU TYR MET MET LYS ASP ASP SER THR TYR SEQRES 10 A 440 GLU MET PHE LYS LEU LEU ASN GLN GLU PHE THR PHE ASP SEQRES 11 A 440 VAL ASP VAL SER ASN LEU PRO CYS GLY LEU ASN GLY ALA SEQRES 12 A 440 LEU TYR PHE VAL ALA MET ASP ALA ASP GLY GLY MET SER SEQRES 13 A 440 LYS TYR PRO THR ASN LYS ALA GLY ALA LYS TYR GLY THR SEQRES 14 A 440 GLY TYR CYS ASP SER GLN CYS PRO ARG ASP LEU LYS PHE SEQRES 15 A 440 ILE ASN GLY GLN ALA ASN VAL GLU GLY TRP GLN PRO SER SEQRES 16 A 440 SER ASN ASP ALA ASN ALA GLY THR GLY ASN HIS GLY SER SEQRES 17 A 440 CYS CYS ALA GLU MET ASP ILE TRP GLU ALA ASN SER ILE SEQRES 18 A 440 SER THR ALA PHE THR PRO HIS PRO CYS ASP THR PRO GLY SEQRES 19 A 440 GLN VAL MET CYS THR GLY ASP ALA CYS GLY GLY THR TYR SEQRES 20 A 440 SER SER ASP ARG TYR GLY GLY THR CYS ASP PRO ASP GLY SEQRES 21 A 440 CYS ASP PHE ASN SER PHE ARG GLN GLY ASN LYS THR PHE SEQRES 22 A 440 TYR GLY PRO GLY MET THR VAL ASP THR LYS SER LYS PHE SEQRES 23 A 440 THR VAL VAL THR GLN PHE ILE THR ASP ASP GLY THR SER SEQRES 24 A 440 SER GLY THR LEU LYS GLU ILE LYS ARG PHE TYR VAL GLN SEQRES 25 A 440 ASN GLY LYS VAL ILE PRO ASN SER GLU SER THR TRP THR SEQRES 26 A 440 GLY VAL SER GLY ASN SER ILE THR THR GLU TYR CYS THR SEQRES 27 A 440 ALA GLN LYS SER LEU PHE GLN ASP GLN ASN VAL PHE GLU SEQRES 28 A 440 LYS HIS GLY GLY LEU GLU GLY MET GLY ALA ALA LEU ALA SEQRES 29 A 440 GLN GLY MET VAL LEU VAL MET SER LEU TRP ASP ASP HIS SEQRES 30 A 440 SER ALA ASN MET LEU TRP LEU ASP SER ASN TYR PRO THR SEQRES 31 A 440 THR ALA SER SER THR THR PRO GLY VAL ALA ARG GLY THR SEQRES 32 A 440 CYS ASP ILE SER SER GLY VAL PRO ALA ASP VAL GLU ALA SEQRES 33 A 440 ASN HIS PRO ASP ALA TYR VAL VAL TYR SER ASN ILE LYS SEQRES 34 A 440 VAL GLY PRO ILE GLY SER THR PHE ASN SER GLY MODRES 4V1Z ASN A 270 ASN GLYCOSYLATION SITE MODRES 4V1Z PCA A 1 GLU PYROGLUTAMIC ACID HET PCA A 1 8 HET NAG A 500 14 HET ZN A1441 1 HET ZN A1442 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG C8 H15 N O6 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *470(H2 O) HELIX 1 1 ALA A 36 ARG A 39 5 4 HELIX 2 2 ASP A 63 ASN A 70 1 8 HELIX 3 3 ASN A 77 GLY A 83 1 7 HELIX 4 4 ALA A 163 GLY A 168 5 6 HELIX 5 5 ASP A 241 GLY A 244 5 4 HELIX 6 6 THR A 333 GLN A 345 1 13 HELIX 7 7 ASN A 348 HIS A 353 1 6 HELIX 8 8 GLY A 354 GLY A 366 1 13 HELIX 9 9 MET A 381 SER A 386 1 6 HELIX 10 10 VAL A 410 HIS A 418 1 9 SHEET 1 AA 3 GLN A 2 VAL A 3 0 SHEET 2 AA 3 CYS A 71 LEU A 73 1 O CYS A 71 N GLN A 2 SHEET 3 AA 3 VAL A 41 LYS A 43 -1 O HIS A 42 N ALA A 72 SHEET 1 AB 7 VAL A 84 SER A 87 0 SHEET 2 AB 7 SER A 90 ASN A 94 1 O SER A 90 N SER A 87 SHEET 3 AB 7 TYR A 422 PRO A 432 1 O VAL A 423 N LEU A 93 SHEET 4 AB 7 GLN A 125 ASP A 132 -1 O GLU A 126 N GLY A 431 SHEET 5 AB 7 PHE A 286 THR A 294 -1 O PHE A 286 N VAL A 131 SHEET 6 AB 7 LEU A 303 GLN A 312 -1 N LYS A 304 O ILE A 293 SHEET 7 AB 7 LYS A 315 PRO A 318 -1 O LYS A 315 N GLN A 312 SHEET 1 AC 7 VAL A 84 SER A 87 0 SHEET 2 AC 7 SER A 90 ASN A 94 1 O SER A 90 N SER A 87 SHEET 3 AC 7 TYR A 422 PRO A 432 1 O VAL A 423 N LEU A 93 SHEET 4 AC 7 SER A 13 CYS A 19 1 O GLN A 17 N VAL A 430 SHEET 5 AC 7 CYS A 25 ILE A 34 -1 O THR A 26 N SER A 18 SHEET 6 AC 7 SER A 106 ASP A 113 -1 O TYR A 109 N VAL A 33 SHEET 7 AC 7 THR A 116 TYR A 117 -1 O THR A 116 N LYS A 112 SHEET 1 AD10 VAL A 84 SER A 87 0 SHEET 2 AD10 SER A 90 ASN A 94 1 O SER A 90 N SER A 87 SHEET 3 AD10 TYR A 422 PRO A 432 1 O VAL A 423 N LEU A 93 SHEET 4 AD10 SER A 13 CYS A 19 1 O GLN A 17 N VAL A 430 SHEET 5 AD10 CYS A 25 ILE A 34 -1 O THR A 26 N SER A 18 SHEET 6 AD10 SER A 106 ASP A 113 -1 O TYR A 109 N VAL A 33 SHEET 7 AD10 MET A 367 ASP A 375 -1 O LEU A 369 N MET A 110 SHEET 8 AD10 LEU A 140 VAL A 147 -1 O ASN A 141 N TRP A 374 SHEET 9 AD10 GLU A 212 ALA A 218 -1 O MET A 213 N PHE A 146 SHEET 10 AD10 THR A 223 HIS A 228 -1 O ALA A 224 N GLU A 217 SHEET 1 AE 8 VAL A 84 SER A 87 0 SHEET 2 AE 8 SER A 90 ASN A 94 1 O SER A 90 N SER A 87 SHEET 3 AE 8 TYR A 422 PRO A 432 1 O VAL A 423 N LEU A 93 SHEET 4 AE 8 SER A 13 CYS A 19 1 O GLN A 17 N VAL A 430 SHEET 5 AE 8 CYS A 25 ILE A 34 -1 O THR A 26 N SER A 18 SHEET 6 AE 8 SER A 106 ASP A 113 -1 O TYR A 109 N VAL A 33 SHEET 7 AE 8 MET A 367 ASP A 375 -1 O LEU A 369 N MET A 110 SHEET 8 AE 8 MET A 119 PHE A 120 -1 O PHE A 120 N MET A 367 SHEET 1 AF 2 THR A 116 TYR A 117 0 SHEET 2 AF 2 SER A 106 ASP A 113 -1 N LYS A 112 O THR A 116 SHEET 1 AG 2 TYR A 51 THR A 52 0 SHEET 2 AG 2 THR A 55 TRP A 56 -1 O THR A 55 N THR A 52 SHEET 1 AH 2 VAL A 96 THR A 98 0 SHEET 2 AH 2 LYS A 102 ILE A 104 -1 O ASN A 103 N THR A 97 SHEET 1 AI 2 PHE A 182 ILE A 183 0 SHEET 2 AI 2 GLN A 186 ALA A 187 -1 O GLN A 186 N ILE A 183 SHEET 1 AJ 2 GLN A 193 PRO A 194 0 SHEET 2 AJ 2 GLY A 202 THR A 203 -1 O THR A 203 N GLN A 193 SHEET 1 AK 2 HIS A 206 CYS A 209 0 SHEET 2 AK 2 VAL A 236 THR A 239 -1 O VAL A 236 N CYS A 209 SHEET 1 AL 2 TYR A 274 GLY A 275 0 SHEET 2 AL 2 VAL A 280 ASP A 281 1 O VAL A 280 N GLY A 275 SSBOND 1 CYS A 19 CYS A 25 1555 1555 2.16 SSBOND 2 CYS A 50 CYS A 71 1555 1555 2.12 SSBOND 3 CYS A 61 CYS A 67 1555 1555 2.15 SSBOND 4 CYS A 138 CYS A 404 1555 1555 2.03 SSBOND 5 CYS A 172 CYS A 210 1555 1555 2.12 SSBOND 6 CYS A 176 CYS A 209 1555 1555 2.19 SSBOND 7 CYS A 230 CYS A 256 1555 1555 2.08 SSBOND 8 CYS A 238 CYS A 243 1555 1555 2.05 SSBOND 9 CYS A 261 CYS A 337 1555 1555 2.09 LINK C PCA A 1 N GLN A 2 1555 1555 1.33 LINK ND2 ASN A 270 C1 NAG A 500 1555 1555 1.44 LINK OD1 ASP A 46 ZN ZN A1442 1555 1555 2.25 LINK OD1 ASP A 375 ZN ZN A1441 1555 1555 2.23 LINK OD2 ASP A 375 ZN ZN A1441 1555 1555 2.55 LINK NE2 HIS A 377 ZN ZN A1441 1555 1555 2.13 LINK OE2 GLU A 415 ZN ZN A1441 1555 1555 1.99 LINK NE2 HIS A 418 ZN ZN A1442 4455 1555 2.20 LINK ZN ZN A1442 O HOH A2088 1555 1555 2.58 LINK ZN ZN A1442 O HOH A2089 1555 1555 2.36 LINK ZN ZN A1442 O HOH A2470 1555 1555 2.23 CISPEP 1 TYR A 388 PRO A 389 0 -7.11 CISPEP 2 SER A 439 GLY A 440 0 1.93 CRYST1 79.230 131.390 45.920 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021777 0.00000 HETATM 1 N PCA A 1 -52.087 13.193 -6.047 1.00 17.61 N HETATM 2 CA PCA A 1 -52.787 14.478 -6.124 1.00 18.50 C HETATM 3 CB PCA A 1 -51.636 15.504 -6.036 1.00 18.34 C HETATM 4 CG PCA A 1 -50.364 14.761 -6.421 1.00 17.04 C HETATM 5 CD PCA A 1 -50.763 13.295 -6.273 1.00 17.54 C HETATM 6 OE PCA A 1 -49.930 12.366 -6.344 1.00 17.40 O HETATM 7 C PCA A 1 -53.512 14.663 -7.386 1.00 19.50 C HETATM 8 O PCA A 1 -53.234 13.976 -8.381 1.00 17.26 O