HEADER HYDROLASE 07-OCT-14 4V27 TITLE STRUCTURE OF THE GH99 ENDO-ALPHA-MANNANASE FROM BACTEROIDES TITLE 2 XYLANISOLVENS IN COMPLEX WITH MANNOSE-ALPHA-1,3-ISOFAGOMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 71; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDO-ALPHA-MANNANASE; COMPND 5 EC: 3.2.1.130; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES XYLANISOLVENS; SOURCE 3 ORGANISM_TAXID: 657309; SOURCE 4 STRAIN: XB1A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROLASE, GH99, CAZY, MANNAN, BACTEROIDES, POLYSACCHARIDE KEYWDS 2 UTILISATION, ENZYME-CARBOHYDRATE INTERACTION, INHIBITOR, GLYCOSIDASE KEYWDS 3 INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR Z.HAKKI,S.BELLMAINE,A.J.THOMPSON,G.SPECIALE,G.J.DAVIES,S.J.WILLIAMS REVDAT 5 10-JAN-24 4V27 1 HETSYN REVDAT 4 29-JUL-20 4V27 1 COMPND REMARK HETNAM HETSYN REVDAT 4 2 1 LINK SITE REVDAT 3 15-JUL-15 4V27 1 HETSYN REVDAT 2 04-FEB-15 4V27 1 JRNL REVDAT 1 24-DEC-14 4V27 0 JRNL AUTH Z.HAKKI,A.J.THOMPSON,S.BELLMAINE,G.SPECIALE,G.J.DAVIES, JRNL AUTH 2 S.J.WILLIAMS JRNL TITL STRUCTURAL AND KINETIC DISSECTION OF THE JRNL TITL 2 ENDO-ALPHA-1,2-MANNANASE ACTIVITY OF BACTERIAL GH99 JRNL TITL 3 GLYCOSIDE HYDROLASES FROM BACTEROIDES SPP. JRNL REF CHEMISTRY V. 21 1966 2015 JRNL REFN ISSN 0947-6539 JRNL PMID 25487964 JRNL DOI 10.1002/CHEM.201405539 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1558 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2092 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2821 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.361 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2967 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4040 ; 1.175 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.636 ;23.264 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;13.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.999 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2321 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1901 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2037 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 157 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 115 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2966 ; 0.876 ; 1.520 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4035 ; 1.475 ; 2.259 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4V27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290061933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30894 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4AD1 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M SODIUM ACETATE PH 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.14000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.14000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.81000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.14000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.14000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.81000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.14000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.14000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.81000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.14000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.14000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2179 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ILE A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 SER A 12 REMARK 465 CYS A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 ASN A 19 REMARK 465 ASN A 20 REMARK 465 PRO A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 ASN A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 ASN A 30 REMARK 465 GLN A 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 31 CG OD1 ND2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 76 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 60 -37.59 67.39 REMARK 500 GLN A 129 57.08 39.24 REMARK 500 THR A 231 -74.90 -101.76 REMARK 500 SER A 232 -151.09 -93.59 REMARK 500 TYR A 252 -60.43 59.49 REMARK 500 THR A 306 57.73 36.95 REMARK 500 ASN A 332 43.23 -153.22 REMARK 500 GLU A 357 -117.20 65.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2430 DISTANCE = 6.40 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V1R RELATED DB: PDB REMARK 900 STRUCTURE OF A SELENOMETHIONINE DERIVATIVE OF THE GH76 ALPHA- REMARK 900 MANNANASE BT2949 BACTEROIDES THETAIOTAOMICRON REMARK 900 RELATED ID: 4V1S RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH76 ALPHA-MANNANASE BT2949 FROM BACTEROIDES REMARK 900 THETAIOTAOMICRON REMARK 900 RELATED ID: 4V28 RELATED DB: PDB REMARK 900 STRUCTURE OF AN E333Q VARIANT OF THE GH99 ENDO-ALPHA -MANNANASE REMARK 900 FROM BACTEROIDES XYLANISOLVENS IN COMPLEX WITH MAN-MAN- REMARK 900 METHYLUMBELLIFERONE DBREF 4V27 A 1 380 UNP D6D1V7 D6D1V7_9BACE 1 380 SEQRES 1 A 380 MET MET ILE PHE PHE LEU SER LEU SER LEU GLU SER CYS SEQRES 2 A 380 SER LYS GLU ASP ASP ASN ASN PRO SER ASN SER GLU ASN SEQRES 3 A 380 ASN GLY GLY ASN ASN ASN LEU GLY THR GLU LEU ASP TYR SEQRES 4 A 380 ASP THR PHE CYS PHE TYR TYR ASP TRP TYR GLY SER GLU SEQRES 5 A 380 ALA ILE ASP GLY GLN TYR ARG HIS TRP ALA HIS ALA ILE SEQRES 6 A 380 ALA PRO ASP PRO ASN GLY GLY SER GLY GLN ASN PRO GLY SEQRES 7 A 380 THR ILE PRO GLY THR GLN GLU SER ILE ALA SER ASN PHE SEQRES 8 A 380 TYR PRO GLN LEU GLY ARG TYR SER SER SER ASP PRO ASN SEQRES 9 A 380 ILE LEU THR LYS HIS MET ASP MET PHE VAL MET ALA ARG SEQRES 10 A 380 THR GLY VAL LEU ALA LEU THR TRP TRP ASN GLU GLN ASP SEQRES 11 A 380 GLU THR GLU ALA LYS ARG ILE GLY LEU ILE LEU ASP ALA SEQRES 12 A 380 ALA ASP LYS LYS LYS ILE LYS VAL CYS PHE HIS LEU GLU SEQRES 13 A 380 PRO TYR PRO SER ARG ASN VAL GLN ASN LEU ARG GLU ASN SEQRES 14 A 380 ILE VAL LYS LEU ILE THR ARG TYR GLY ASN HIS PRO ALA SEQRES 15 A 380 PHE TYR ARG LYS ASP GLY LYS PRO LEU PHE PHE ILE TYR SEQRES 16 A 380 ASP SER TYR LEU ILE GLU PRO SER GLU TRP GLU LYS LEU SEQRES 17 A 380 LEU SER PRO GLY GLY SER ILE THR ILE ARG ASN THR ALA SEQRES 18 A 380 TYR ASP ALA LEU MET ILE GLY LEU TRP THR SER SER PRO SEQRES 19 A 380 THR VAL GLN ARG PRO PHE ILE LEU ASN ALA HIS PHE ASP SEQRES 20 A 380 GLY PHE TYR THR TYR PHE ALA ALA THR GLY PHE THR TYR SEQRES 21 A 380 GLY SER THR PRO THR ASN TRP VAL SER MET GLN LYS TRP SEQRES 22 A 380 ALA LYS GLU ASN GLY LYS ILE PHE ILE PRO SER VAL GLY SEQRES 23 A 380 PRO GLY TYR ILE ASP THR ARG ILE ARG PRO TRP ASN GLY SEQRES 24 A 380 SER VAL ILE ARG THR ARG THR ASP GLY GLN TYR TYR ASP SEQRES 25 A 380 ALA MET TYR ARG LYS ALA ILE GLU ALA GLY VAL SER ALA SEQRES 26 A 380 ILE SER ILE THR SER PHE ASN GLU TRP HIS GLU GLY SER SEQRES 27 A 380 GLN ILE GLU PRO ALA VAL PRO TYR THR SER SER GLU PHE SEQRES 28 A 380 THR TYR LEU ASP TYR GLU ASN ARG GLU PRO ASP TYR TYR SEQRES 29 A 380 LEU THR ARG THR ALA TYR TRP VAL GLY LYS PHE ARG GLU SEQRES 30 A 380 SER LYS GLN HET MAN A 500 11 HET IFM A 501 10 HET EDO A 600 4 HET EDO A 601 4 HET EDO A 602 4 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM IFM 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE HETNAM EDO 1,2-ETHANEDIOL HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN IFM AFEGOSTAT; ISOFAGOMINE; (3R,4R,5R)-5-(HYDROXYMETHYL) HETSYN 2 IFM PIPERIDINE-3,4-DIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MAN C6 H12 O6 FORMUL 3 IFM C6 H13 N O3 FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *430(H2 O) HELIX 1 1 SER A 51 GLY A 56 1 6 HELIX 2 2 ASP A 102 ARG A 117 1 16 HELIX 3 3 ASP A 130 LYS A 146 1 17 HELIX 4 4 ASN A 162 GLY A 178 1 17 HELIX 5 5 ASP A 196 ILE A 200 5 5 HELIX 6 6 GLU A 201 SER A 210 1 10 HELIX 7 7 SER A 233 HIS A 245 1 13 HELIX 8 8 THR A 263 THR A 265 5 3 HELIX 9 9 ASN A 266 ASN A 277 1 12 HELIX 10 10 ASN A 298 ILE A 302 5 5 HELIX 11 11 ARG A 305 ASP A 307 5 3 HELIX 12 12 GLY A 308 ALA A 321 1 14 HELIX 13 13 GLU A 333 GLY A 337 5 5 HELIX 14 14 ASP A 362 LYS A 379 1 18 SHEET 1 AA 9 ILE A 280 ILE A 282 0 SHEET 2 AA 9 GLY A 248 TYR A 250 1 O PHE A 249 N ILE A 282 SHEET 3 AA 9 LEU A 225 LEU A 229 1 O GLY A 228 N TYR A 250 SHEET 4 AA 9 LEU A 191 ILE A 194 1 O PHE A 192 N ILE A 227 SHEET 5 AA 9 LYS A 150 LEU A 155 1 O PHE A 153 N PHE A 193 SHEET 6 AA 9 THR A 118 TRP A 125 1 O GLY A 119 N LYS A 150 SHEET 7 AA 9 ASP A 38 TYR A 45 1 O ASP A 38 N GLY A 119 SHEET 8 AA 9 ILE A 326 ILE A 328 1 O ILE A 326 N PHE A 42 SHEET 9 AA 9 SER A 284 VAL A 285 1 N VAL A 285 O SER A 327 SHEET 1 AB 2 HIS A 63 ALA A 64 0 SHEET 2 AB 2 THR A 79 ILE A 80 -1 O ILE A 80 N HIS A 63 LINK C1 MAN A 500 O3 IFM A 501 1555 1555 1.43 CISPEP 1 THR A 329 SER A 330 0 7.33 CRYST1 108.280 108.280 67.620 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009235 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014789 0.00000