HEADER SIGNALING PROTEIN 17-OCT-14 4V3E TITLE THE CIDRA DOMAIN FROM IT4VAR07 PFEMP1 BOUND TO ENDOTHELIAL PROTEIN C TITLE 2 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: IT4VAR07 CIDRA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CIDRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ENDOTHELIAL PROTEIN C RECEPTOR; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 STRAIN: IT4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: S2; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PEXPRES2-1 KEYWDS SIGNALING PROTEIN, PFEMP1, EPCR, MALARIA, CIDR DOMAIN, ENDOTHELIAL KEYWDS 2 PROTEIN C RECEPTOR, PLASMODIUM FALCIPARUM EXPDTA X-RAY DIFFRACTION AUTHOR C.K.Y.LAU,L.TURNER,J.S.JESPERSEN,E.D.LOWE,B.PETERSEN,C.W.WANG, AUTHOR 2 J.E.V.PETERSEN,J.LUSINGU,T.G.THEANDER,T.LAVSTSEN,M.K.HIGGINS REVDAT 6 16-OCT-24 4V3E 1 REMARK REVDAT 5 10-JAN-24 4V3E 1 REMARK HETSYN REVDAT 4 29-JUL-20 4V3E 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 28-JAN-15 4V3E 1 JRNL REVDAT 2 24-DEC-14 4V3E 1 JRNL REVDAT 1 17-DEC-14 4V3E 0 JRNL AUTH C.K.Y.LAU,L.TURNER,J.S.JESPERSEN,E.D.LOWE,B.PETERSEN, JRNL AUTH 2 C.W.WANG,J.E.V.PETERSEN,J.LUSINGU,T.G.THEANDER,T.LAVSTSEN, JRNL AUTH 3 M.K.HIGGINS JRNL TITL STRUCTURAL CONSERVATION DESPITE HUGE SEQUENCE DIVERSITY JRNL TITL 2 ALLOWS EPCR BINDING BY THE PFEMP1 FAMILY IMPLICATED IN JRNL TITL 3 SEVERE CHILDHOOD MALARIA. JRNL REF CELL HOST MICROBE. V. 17 118 2015 JRNL REFN ISSN 1931-3128 JRNL PMID 25482433 JRNL DOI 10.1016/J.CHOM.2014.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 520 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2974 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2678 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2807 REMARK 3 BIN R VALUE (WORKING SET) : 0.2641 REMARK 3 BIN FREE R VALUE : 0.3313 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2981 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.59040 REMARK 3 B22 (A**2) : -9.59040 REMARK 3 B33 (A**2) : 19.18080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.853 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.430 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3215 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4343 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1185 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 437 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3215 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 426 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3551 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.26 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.17 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 13.5480 3.0853 14.3969 REMARK 3 T TENSOR REMARK 3 T11: -0.2293 T22: 0.0276 REMARK 3 T33: -0.2488 T12: 0.0815 REMARK 3 T13: -0.1348 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 6.0786 L22: 2.1410 REMARK 3 L33: 5.8066 L12: -0.9762 REMARK 3 L13: -3.1135 L23: -0.4282 REMARK 3 S TENSOR REMARK 3 S11: 0.4479 S12: 0.1468 S13: 0.0540 REMARK 3 S21: -0.0231 S22: -0.2346 S23: -0.4131 REMARK 3 S31: -0.3760 S32: 0.4113 S33: -0.2134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -13.9784 -3.7767 24.4817 REMARK 3 T TENSOR REMARK 3 T11: -0.0210 T22: 0.2938 REMARK 3 T33: -0.3003 T12: 0.0314 REMARK 3 T13: -0.1201 T23: -0.0959 REMARK 3 L TENSOR REMARK 3 L11: 6.9473 L22: 1.9560 REMARK 3 L33: 3.2587 L12: -0.2746 REMARK 3 L13: -3.1716 L23: -0.3275 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.6961 S13: 0.0055 REMARK 3 S21: -0.0911 S22: 0.0069 S23: 0.0793 REMARK 3 S31: -0.0420 S32: -0.6527 S33: -0.0542 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4V3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1290062024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 83.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L8J REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NANO3, 0.1 M BTP PH 7.5, 20% PEG REMARK 280 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.00333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.50167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.50167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 167.00333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 467 REMARK 465 ASP A 468 REMARK 465 CYS A 469 REMARK 465 GLY A 470 REMARK 465 VAL A 471 REMARK 465 ILE A 472 REMARK 465 CYS A 473 REMARK 465 GLU A 474 REMARK 465 ASN A 475 REMARK 465 GLY A 476 REMARK 465 LYS A 477 REMARK 465 CYS A 478 REMARK 465 VAL A 479 REMARK 465 VAL A 480 REMARK 465 LYS A 481 REMARK 465 GLU A 482 REMARK 465 ASN A 483 REMARK 465 GLY A 484 REMARK 465 SER A 485 REMARK 465 ASN A 486 REMARK 465 CYS A 487 REMARK 465 ARG A 488 REMARK 465 HIS A 489 REMARK 465 TYR A 490 REMARK 465 ASN A 491 REMARK 465 ILE A 492 REMARK 465 TYR A 493 REMARK 465 GLU A 494 REMARK 465 PRO A 495 REMARK 465 ALA A 496 REMARK 465 GLU A 553 REMARK 465 THR A 554 REMARK 465 LYS A 555 REMARK 465 SER A 556 REMARK 465 GLY A 557 REMARK 465 ASN A 558 REMARK 465 SER A 559 REMARK 465 THR A 560 REMARK 465 TYR A 561 REMARK 465 ASN A 595 REMARK 465 ASN A 596 REMARK 465 THR A 597 REMARK 465 THR A 598 REMARK 465 GLU A 679 REMARK 465 SER A 680 REMARK 465 SER A 681 REMARK 465 LYS A 682 REMARK 465 LYS A 683 REMARK 465 ASN A 684 REMARK 465 LYS A 685 REMARK 465 GLY A 686 REMARK 465 THR A 687 REMARK 465 LYS A 688 REMARK 465 ASP A 689 REMARK 465 SER A 690 REMARK 465 ASN A 714 REMARK 465 GLU A 715 REMARK 465 ALA A 716 REMARK 465 CYS A 717 REMARK 465 LEU B 8 REMARK 465 GLN B 138 REMARK 465 VAL B 139 REMARK 465 THR B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 497 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 677 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 THR A 678 N - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 527 -81.53 -67.09 REMARK 500 ASN A 531 -165.05 -107.28 REMARK 500 LYS A 543 -72.50 -114.97 REMARK 500 GLU A 563 43.81 -89.37 REMARK 500 ASN A 712 -58.92 -142.73 REMARK 500 PRO B 55 57.87 -67.49 REMARK 500 THR B 88 118.32 73.14 REMARK 500 PRO B 105 -73.00 -49.69 REMARK 500 GLU B 106 51.44 -102.75 REMARK 500 PHE B 123 -70.67 -127.08 REMARK 500 ARG B 158 -77.66 -112.76 REMARK 500 ASP B 167 -63.20 -109.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 497 ASP A 498 148.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 PTY B 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4V3D RELATED DB: PDB REMARK 900 THE CIDRA DOMAIN FROM HB3VAR03 PFEMP1 BOUND TO ENDOTHELIAL PROTEIN REMARK 900 C RECEPTOR DBREF 4V3E A 467 717 PDB 4V3E 4V3E 467 717 DBREF 4V3E B 8 178 UNP Q9UNN8 EPCR_HUMAN 25 195 SEQRES 1 A 251 PRO ASP CYS GLY VAL ILE CYS GLU ASN GLY LYS CYS VAL SEQRES 2 A 251 VAL LYS GLU ASN GLY SER ASN CYS ARG HIS TYR ASN ILE SEQRES 3 A 251 TYR GLU PRO ALA PRO ASP VAL LYS THR THR GLU ILE ASN SEQRES 4 A 251 VAL ILE VAL SER GLY ASP GLU GLN GLY ILE ILE THR LYS SEQRES 5 A 251 LYS LEU GLN ASP PHE CYS MET ASN PRO ASN ASN GLU ASN SEQRES 6 A 251 GLY THR ASN ASN GLN ILE TRP LYS CYS TYR TYR LYS ASP SEQRES 7 A 251 GLU LYS GLU ASP LYS CYS LYS VAL GLU THR LYS SER GLY SEQRES 8 A 251 ASN SER THR TYR LYS GLU LYS ILE THR SER PHE ASP GLU SEQRES 9 A 251 PHE PHE ASP PHE TRP VAL ARG LYS LEU LEU ILE ASP THR SEQRES 10 A 251 ILE LYS TRP GLU THR GLU LEU THR TYR CYS ILE ASN ASN SEQRES 11 A 251 THR THR ASN ALA ASP CYS ASN ASN GLU CYS ASN LYS ASN SEQRES 12 A 251 CYS VAL CYS PHE ASP LYS TRP VAL LYS GLN LYS GLU LYS SEQRES 13 A 251 GLU TRP LYS ASN ILE MET ASP LEU PHE THR ASN LYS HIS SEQRES 14 A 251 ASP ILE PRO LYS LYS TYR TYR LEU ASN ILE ASN ASP LEU SEQRES 15 A 251 PHE ASN SER PHE PHE PHE GLN VAL ILE TYR LYS PHE ASN SEQRES 16 A 251 GLU GLY GLU ALA LYS TRP ASN LYS LEU LYS GLU ASN LEU SEQRES 17 A 251 LYS LYS LYS THR GLU SER SER LYS LYS ASN LYS GLY THR SEQRES 18 A 251 LYS ASP SER GLU ALA ALA ILE LYS VAL LEU PHE ASP HIS SEQRES 19 A 251 LEU LYS GLU THR ALA THR ILE CYS LYS ASP ASN ASN THR SEQRES 20 A 251 ASN GLU ALA CYS SEQRES 1 B 171 LEU GLN ARG LEU HIS MET LEU GLN ILE SER TYR PHE ARG SEQRES 2 B 171 ASP PRO TYR HIS VAL TRP TYR GLN GLY ASN ALA SER LEU SEQRES 3 B 171 GLY GLY HIS LEU THR HIS VAL LEU GLU GLY PRO ASP THR SEQRES 4 B 171 ASN THR THR ILE ILE GLN LEU GLN PRO LEU GLN GLU PRO SEQRES 5 B 171 GLU SER TRP ALA ARG THR GLN SER GLY LEU GLN SER TYR SEQRES 6 B 171 LEU LEU GLN PHE HIS GLY LEU VAL ARG LEU VAL HIS GLN SEQRES 7 B 171 GLU ARG THR LEU ALA PHE PRO LEU THR ILE ARG CYS PHE SEQRES 8 B 171 LEU GLY CYS GLU LEU PRO PRO GLU GLY SER ARG ALA HIS SEQRES 9 B 171 VAL PHE PHE GLU VAL ALA VAL ASN GLY SER SER PHE VAL SEQRES 10 B 171 SER PHE ARG PRO GLU ARG ALA LEU TRP GLN ALA ASP THR SEQRES 11 B 171 GLN VAL THR SER GLY VAL VAL THR PHE THR LEU GLN GLN SEQRES 12 B 171 LEU ASN ALA TYR ASN ARG THR ARG TYR GLU LEU ARG GLU SEQRES 13 B 171 PHE LEU GLU ASP THR CYS VAL GLN TYR VAL GLN LYS HIS SEQRES 14 B 171 ILE SER MODRES 4V3E ASN B 30 ASN GLYCOSYLATION SITE MODRES 4V3E ASN B 47 ASN GLYCOSYLATION SITE MODRES 4V3E ASN B 119 ASN GLYCOSYLATION SITE MODRES 4V3E ASN B 155 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET PTY B 200 50 HET NAG B 201 14 HET NAG B 206 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 MAN C6 H12 O6 FORMUL 5 PTY C40 H80 N O8 P HELIX 1 1 ILE A 515 LEU A 520 1 6 HELIX 2 2 LEU A 520 ASN A 526 1 7 HELIX 3 3 SER A 567 THR A 591 1 25 HELIX 4 4 ASN A 604 ASP A 629 1 26 HELIX 5 5 ASN A 633 ILE A 637 5 5 HELIX 6 6 PRO A 638 TYR A 642 5 5 HELIX 7 7 ASN A 644 PHE A 652 1 9 HELIX 8 8 PHE A 652 TYR A 658 1 7 HELIX 9 9 GLU A 662 THR A 678 1 17 HELIX 10 10 ALA A 692 ASN A 711 1 20 HELIX 11 11 GLU B 58 THR B 88 1 31 HELIX 12 12 SER B 141 ASN B 152 1 12 HELIX 13 13 TYR B 154 ILE B 177 1 24 SHEET 1 AA 4 LYS A 500 ASN A 505 0 SHEET 2 AA 4 ILE A 537 TYR A 542 -1 O TRP A 538 N ILE A 504 SHEET 3 AA 4 ASP A 548 LYS A 551 -1 O LYS A 549 N TYR A 541 SHEET 4 AA 4 ILE A 565 THR A 566 -1 O THR A 566 N CYS A 550 SHEET 1 BA 8 THR B 49 GLN B 52 0 SHEET 2 BA 8 HIS B 36 PRO B 44 -1 O VAL B 40 N ILE B 51 SHEET 3 BA 8 HIS B 24 LEU B 33 -1 O TYR B 27 N GLY B 43 SHEET 4 BA 8 ARG B 10 ASP B 21 -1 O HIS B 12 N SER B 32 SHEET 5 BA 8 LEU B 93 GLU B 102 -1 O LEU B 93 N PHE B 19 SHEET 6 BA 8 HIS B 111 VAL B 118 -1 O HIS B 111 N GLU B 102 SHEET 7 BA 8 SER B 121 ARG B 127 -1 O SER B 121 N VAL B 118 SHEET 8 BA 8 LEU B 132 ALA B 135 -1 O LEU B 132 N ARG B 127 SSBOND 1 CYS A 524 CYS A 612 1555 1555 2.01 SSBOND 2 CYS A 540 CYS A 550 1555 1555 2.05 SSBOND 3 CYS A 593 CYS A 606 1555 1555 2.04 SSBOND 4 CYS A 610 CYS A 708 1555 1555 2.03 SSBOND 5 CYS B 101 CYS B 169 1555 1555 2.06 LINK ND2 ASN B 30 C1 NAG B 201 1555 1555 1.44 LINK ND2 ASN B 47 C1 NAG B 206 1555 1555 1.44 LINK ND2 ASN B 119 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 155 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47 CISPEP 1 PHE B 91 PRO B 92 0 1.44 CRYST1 56.019 56.019 250.505 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017851 0.010306 0.000000 0.00000 SCALE2 0.000000 0.020613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003992 0.00000