HEADER SIGNALING PROTEIN 17-OCT-14 4V3E
TITLE THE CIDRA DOMAIN FROM IT4VAR07 PFEMP1 BOUND TO ENDOTHELIAL PROTEIN C
TITLE 2 RECEPTOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: IT4VAR07 CIDRA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: CIDRA;
COMPND 5 ENGINEERED: YES;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: ENDOTHELIAL PROTEIN C RECEPTOR;
COMPND 8 CHAIN: B;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM;
SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM;
SOURCE 4 ORGANISM_TAXID: 5833;
SOURCE 5 STRAIN: IT4;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B;
SOURCE 11 MOL_ID: 2;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606;
SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER;
SOURCE 16 EXPRESSION_SYSTEM_COMMON: FRUIT FLY;
SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7227;
SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: S2;
SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PEXPRES2-1
KEYWDS SIGNALING PROTEIN, PFEMP1, EPCR, MALARIA, CIDR DOMAIN, ENDOTHELIAL
KEYWDS 2 PROTEIN C RECEPTOR, PLASMODIUM FALCIPARUM
EXPDTA X-RAY DIFFRACTION
AUTHOR C.K.Y.LAU,L.TURNER,J.S.JESPERSEN,E.D.LOWE,B.PETERSEN,C.W.WANG,
AUTHOR 2 J.E.V.PETERSEN,J.LUSINGU,T.G.THEANDER,T.LAVSTSEN,M.K.HIGGINS
REVDAT 6 16-OCT-24 4V3E 1 REMARK
REVDAT 5 10-JAN-24 4V3E 1 REMARK HETSYN
REVDAT 4 29-JUL-20 4V3E 1 COMPND REMARK HETNAM LINK
REVDAT 4 2 1 SITE ATOM
REVDAT 3 28-JAN-15 4V3E 1 JRNL
REVDAT 2 24-DEC-14 4V3E 1 JRNL
REVDAT 1 17-DEC-14 4V3E 0
JRNL AUTH C.K.Y.LAU,L.TURNER,J.S.JESPERSEN,E.D.LOWE,B.PETERSEN,
JRNL AUTH 2 C.W.WANG,J.E.V.PETERSEN,J.LUSINGU,T.G.THEANDER,T.LAVSTSEN,
JRNL AUTH 3 M.K.HIGGINS
JRNL TITL STRUCTURAL CONSERVATION DESPITE HUGE SEQUENCE DIVERSITY
JRNL TITL 2 ALLOWS EPCR BINDING BY THE PFEMP1 FAMILY IMPLICATED IN
JRNL TITL 3 SEVERE CHILDHOOD MALARIA.
JRNL REF CELL HOST MICROBE. V. 17 118 2015
JRNL REFN ISSN 1931-3128
JRNL PMID 25482433
JRNL DOI 10.1016/J.CHOM.2014.11.007
REMARK 2
REMARK 2 RESOLUTION. 2.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.50
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 10832
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.249
REMARK 3 R VALUE (WORKING SET) : 0.247
REMARK 3 FREE R VALUE : 0.276
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 520
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 5
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2974
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2678
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2807
REMARK 3 BIN R VALUE (WORKING SET) : 0.2641
REMARK 3 BIN FREE R VALUE : 0.3313
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.62
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 167
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2981
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 145
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 108.5
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 122.7
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -9.59040
REMARK 3 B22 (A**2) : -9.59040
REMARK 3 B33 (A**2) : 19.18080
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.853
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.430
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3215 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4343 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1185 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 95 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 437 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3215 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 426 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3551 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.011
REMARK 3 BOND ANGLES (DEGREES) : 1.26
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.33
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 22.17
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 13.5480 3.0853 14.3969
REMARK 3 T TENSOR
REMARK 3 T11: -0.2293 T22: 0.0276
REMARK 3 T33: -0.2488 T12: 0.0815
REMARK 3 T13: -0.1348 T23: -0.0704
REMARK 3 L TENSOR
REMARK 3 L11: 6.0786 L22: 2.1410
REMARK 3 L33: 5.8066 L12: -0.9762
REMARK 3 L13: -3.1135 L23: -0.4282
REMARK 3 S TENSOR
REMARK 3 S11: 0.4479 S12: 0.1468 S13: 0.0540
REMARK 3 S21: -0.0231 S22: -0.2346 S23: -0.4131
REMARK 3 S31: -0.3760 S32: 0.4113 S33: -0.2134
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -13.9784 -3.7767 24.4817
REMARK 3 T TENSOR
REMARK 3 T11: -0.0210 T22: 0.2938
REMARK 3 T33: -0.3003 T12: 0.0314
REMARK 3 T13: -0.1201 T23: -0.0959
REMARK 3 L TENSOR
REMARK 3 L11: 6.9473 L22: 1.9560
REMARK 3 L33: 3.2587 L12: -0.2746
REMARK 3 L13: -3.1716 L23: -0.3275
REMARK 3 S TENSOR
REMARK 3 S11: 0.0473 S12: 0.6961 S13: 0.0055
REMARK 3 S21: -0.0911 S22: 0.0069 S23: 0.0793
REMARK 3 S31: -0.0420 S32: -0.6527 S33: -0.0542
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4V3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-14.
REMARK 100 THE DEPOSITION ID IS D_1290062024.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10832
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900
REMARK 200 RESOLUTION RANGE LOW (A) : 83.900
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 8.400
REMARK 200 R MERGE (I) : 0.06000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1
REMARK 200 DATA REDUNDANCY IN SHELL : 6.90
REMARK 200 R MERGE FOR SHELL (I) : 0.88000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 1L8J
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.77
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NANO3, 0.1 M BTP PH 7.5, 20% PEG
REMARK 280 3350
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 167.00333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 83.50167
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 83.50167
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 167.00333
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.6 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 PRO A 467
REMARK 465 ASP A 468
REMARK 465 CYS A 469
REMARK 465 GLY A 470
REMARK 465 VAL A 471
REMARK 465 ILE A 472
REMARK 465 CYS A 473
REMARK 465 GLU A 474
REMARK 465 ASN A 475
REMARK 465 GLY A 476
REMARK 465 LYS A 477
REMARK 465 CYS A 478
REMARK 465 VAL A 479
REMARK 465 VAL A 480
REMARK 465 LYS A 481
REMARK 465 GLU A 482
REMARK 465 ASN A 483
REMARK 465 GLY A 484
REMARK 465 SER A 485
REMARK 465 ASN A 486
REMARK 465 CYS A 487
REMARK 465 ARG A 488
REMARK 465 HIS A 489
REMARK 465 TYR A 490
REMARK 465 ASN A 491
REMARK 465 ILE A 492
REMARK 465 TYR A 493
REMARK 465 GLU A 494
REMARK 465 PRO A 495
REMARK 465 ALA A 496
REMARK 465 GLU A 553
REMARK 465 THR A 554
REMARK 465 LYS A 555
REMARK 465 SER A 556
REMARK 465 GLY A 557
REMARK 465 ASN A 558
REMARK 465 SER A 559
REMARK 465 THR A 560
REMARK 465 TYR A 561
REMARK 465 ASN A 595
REMARK 465 ASN A 596
REMARK 465 THR A 597
REMARK 465 THR A 598
REMARK 465 GLU A 679
REMARK 465 SER A 680
REMARK 465 SER A 681
REMARK 465 LYS A 682
REMARK 465 LYS A 683
REMARK 465 ASN A 684
REMARK 465 LYS A 685
REMARK 465 GLY A 686
REMARK 465 THR A 687
REMARK 465 LYS A 688
REMARK 465 ASP A 689
REMARK 465 SER A 690
REMARK 465 ASN A 714
REMARK 465 GLU A 715
REMARK 465 ALA A 716
REMARK 465 CYS A 717
REMARK 465 LEU B 8
REMARK 465 GLN B 138
REMARK 465 VAL B 139
REMARK 465 THR B 140
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PRO A 497 O
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LYS A 677 N - CA - C ANGL. DEV. = 19.1 DEGREES
REMARK 500 THR A 678 N - CA - C ANGL. DEV. = -19.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 527 -81.53 -67.09
REMARK 500 ASN A 531 -165.05 -107.28
REMARK 500 LYS A 543 -72.50 -114.97
REMARK 500 GLU A 563 43.81 -89.37
REMARK 500 ASN A 712 -58.92 -142.73
REMARK 500 PRO B 55 57.87 -67.49
REMARK 500 THR B 88 118.32 73.14
REMARK 500 PRO B 105 -73.00 -49.69
REMARK 500 GLU B 106 51.44 -102.75
REMARK 500 PHE B 123 -70.67 -127.08
REMARK 500 ARG B 158 -77.66 -112.76
REMARK 500 ASP B 167 -63.20 -109.77
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 PRO A 497 ASP A 498 148.63
REMARK 500
REMARK 500 REMARK: NULL
REMARK 615
REMARK 615 ZERO OCCUPANCY ATOM
REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 615 M RES C SSEQI
REMARK 615 PTY B 200
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4V3D RELATED DB: PDB
REMARK 900 THE CIDRA DOMAIN FROM HB3VAR03 PFEMP1 BOUND TO ENDOTHELIAL PROTEIN
REMARK 900 C RECEPTOR
DBREF 4V3E A 467 717 PDB 4V3E 4V3E 467 717
DBREF 4V3E B 8 178 UNP Q9UNN8 EPCR_HUMAN 25 195
SEQRES 1 A 251 PRO ASP CYS GLY VAL ILE CYS GLU ASN GLY LYS CYS VAL
SEQRES 2 A 251 VAL LYS GLU ASN GLY SER ASN CYS ARG HIS TYR ASN ILE
SEQRES 3 A 251 TYR GLU PRO ALA PRO ASP VAL LYS THR THR GLU ILE ASN
SEQRES 4 A 251 VAL ILE VAL SER GLY ASP GLU GLN GLY ILE ILE THR LYS
SEQRES 5 A 251 LYS LEU GLN ASP PHE CYS MET ASN PRO ASN ASN GLU ASN
SEQRES 6 A 251 GLY THR ASN ASN GLN ILE TRP LYS CYS TYR TYR LYS ASP
SEQRES 7 A 251 GLU LYS GLU ASP LYS CYS LYS VAL GLU THR LYS SER GLY
SEQRES 8 A 251 ASN SER THR TYR LYS GLU LYS ILE THR SER PHE ASP GLU
SEQRES 9 A 251 PHE PHE ASP PHE TRP VAL ARG LYS LEU LEU ILE ASP THR
SEQRES 10 A 251 ILE LYS TRP GLU THR GLU LEU THR TYR CYS ILE ASN ASN
SEQRES 11 A 251 THR THR ASN ALA ASP CYS ASN ASN GLU CYS ASN LYS ASN
SEQRES 12 A 251 CYS VAL CYS PHE ASP LYS TRP VAL LYS GLN LYS GLU LYS
SEQRES 13 A 251 GLU TRP LYS ASN ILE MET ASP LEU PHE THR ASN LYS HIS
SEQRES 14 A 251 ASP ILE PRO LYS LYS TYR TYR LEU ASN ILE ASN ASP LEU
SEQRES 15 A 251 PHE ASN SER PHE PHE PHE GLN VAL ILE TYR LYS PHE ASN
SEQRES 16 A 251 GLU GLY GLU ALA LYS TRP ASN LYS LEU LYS GLU ASN LEU
SEQRES 17 A 251 LYS LYS LYS THR GLU SER SER LYS LYS ASN LYS GLY THR
SEQRES 18 A 251 LYS ASP SER GLU ALA ALA ILE LYS VAL LEU PHE ASP HIS
SEQRES 19 A 251 LEU LYS GLU THR ALA THR ILE CYS LYS ASP ASN ASN THR
SEQRES 20 A 251 ASN GLU ALA CYS
SEQRES 1 B 171 LEU GLN ARG LEU HIS MET LEU GLN ILE SER TYR PHE ARG
SEQRES 2 B 171 ASP PRO TYR HIS VAL TRP TYR GLN GLY ASN ALA SER LEU
SEQRES 3 B 171 GLY GLY HIS LEU THR HIS VAL LEU GLU GLY PRO ASP THR
SEQRES 4 B 171 ASN THR THR ILE ILE GLN LEU GLN PRO LEU GLN GLU PRO
SEQRES 5 B 171 GLU SER TRP ALA ARG THR GLN SER GLY LEU GLN SER TYR
SEQRES 6 B 171 LEU LEU GLN PHE HIS GLY LEU VAL ARG LEU VAL HIS GLN
SEQRES 7 B 171 GLU ARG THR LEU ALA PHE PRO LEU THR ILE ARG CYS PHE
SEQRES 8 B 171 LEU GLY CYS GLU LEU PRO PRO GLU GLY SER ARG ALA HIS
SEQRES 9 B 171 VAL PHE PHE GLU VAL ALA VAL ASN GLY SER SER PHE VAL
SEQRES 10 B 171 SER PHE ARG PRO GLU ARG ALA LEU TRP GLN ALA ASP THR
SEQRES 11 B 171 GLN VAL THR SER GLY VAL VAL THR PHE THR LEU GLN GLN
SEQRES 12 B 171 LEU ASN ALA TYR ASN ARG THR ARG TYR GLU LEU ARG GLU
SEQRES 13 B 171 PHE LEU GLU ASP THR CYS VAL GLN TYR VAL GLN LYS HIS
SEQRES 14 B 171 ILE SER
MODRES 4V3E ASN B 30 ASN GLYCOSYLATION SITE
MODRES 4V3E ASN B 47 ASN GLYCOSYLATION SITE
MODRES 4V3E ASN B 119 ASN GLYCOSYLATION SITE
MODRES 4V3E ASN B 155 ASN GLYCOSYLATION SITE
HET NAG C 1 14
HET NAG C 2 14
HET MAN C 3 11
HET NAG D 1 14
HET NAG D 2 14
HET PTY B 200 50
HET NAG B 201 14
HET NAG B 206 14
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM MAN ALPHA-D-MANNOPYRANOSE
HETNAM PTY PHOSPHATIDYLETHANOLAMINE
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE
FORMUL 3 NAG 6(C8 H15 N O6)
FORMUL 3 MAN C6 H12 O6
FORMUL 5 PTY C40 H80 N O8 P
HELIX 1 1 ILE A 515 LEU A 520 1 6
HELIX 2 2 LEU A 520 ASN A 526 1 7
HELIX 3 3 SER A 567 THR A 591 1 25
HELIX 4 4 ASN A 604 ASP A 629 1 26
HELIX 5 5 ASN A 633 ILE A 637 5 5
HELIX 6 6 PRO A 638 TYR A 642 5 5
HELIX 7 7 ASN A 644 PHE A 652 1 9
HELIX 8 8 PHE A 652 TYR A 658 1 7
HELIX 9 9 GLU A 662 THR A 678 1 17
HELIX 10 10 ALA A 692 ASN A 711 1 20
HELIX 11 11 GLU B 58 THR B 88 1 31
HELIX 12 12 SER B 141 ASN B 152 1 12
HELIX 13 13 TYR B 154 ILE B 177 1 24
SHEET 1 AA 4 LYS A 500 ASN A 505 0
SHEET 2 AA 4 ILE A 537 TYR A 542 -1 O TRP A 538 N ILE A 504
SHEET 3 AA 4 ASP A 548 LYS A 551 -1 O LYS A 549 N TYR A 541
SHEET 4 AA 4 ILE A 565 THR A 566 -1 O THR A 566 N CYS A 550
SHEET 1 BA 8 THR B 49 GLN B 52 0
SHEET 2 BA 8 HIS B 36 PRO B 44 -1 O VAL B 40 N ILE B 51
SHEET 3 BA 8 HIS B 24 LEU B 33 -1 O TYR B 27 N GLY B 43
SHEET 4 BA 8 ARG B 10 ASP B 21 -1 O HIS B 12 N SER B 32
SHEET 5 BA 8 LEU B 93 GLU B 102 -1 O LEU B 93 N PHE B 19
SHEET 6 BA 8 HIS B 111 VAL B 118 -1 O HIS B 111 N GLU B 102
SHEET 7 BA 8 SER B 121 ARG B 127 -1 O SER B 121 N VAL B 118
SHEET 8 BA 8 LEU B 132 ALA B 135 -1 O LEU B 132 N ARG B 127
SSBOND 1 CYS A 524 CYS A 612 1555 1555 2.01
SSBOND 2 CYS A 540 CYS A 550 1555 1555 2.05
SSBOND 3 CYS A 593 CYS A 606 1555 1555 2.04
SSBOND 4 CYS A 610 CYS A 708 1555 1555 2.03
SSBOND 5 CYS B 101 CYS B 169 1555 1555 2.06
LINK ND2 ASN B 30 C1 NAG B 201 1555 1555 1.44
LINK ND2 ASN B 47 C1 NAG B 206 1555 1555 1.44
LINK ND2 ASN B 119 C1 NAG C 1 1555 1555 1.44
LINK ND2 ASN B 155 C1 NAG D 1 1555 1555 1.44
LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44
LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.44
LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.47
CISPEP 1 PHE B 91 PRO B 92 0 1.44
CRYST1 56.019 56.019 250.505 90.00 90.00 120.00 P 32 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017851 0.010306 0.000000 0.00000
SCALE2 0.000000 0.020613 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003992 0.00000