HEADER TRANSFERASE/TRANSFERASE INHIBITOR 13-AUG-14 4W1V TITLE CRYSTAL STRUCTURE OF 7,8-DIAMINOPELARGONIC ACID SYNTHASE (BIOA) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS, COMPLEXED WITH A THIAZOLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 7,8-DIAMINO-PELARGONIC ACID AMINOTRANSFERASE,DAPA COMPND 5 AMINOTRANSFERASE,8-DIAMINONONANOATE SYNTHASE,DANS,DIAMINOPELARGONIC COMPND 6 ACID SYNTHASE; COMPND 7 EC: 2.6.1.62; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83331; SOURCE 4 STRAIN: CDC 1551 / OSHKOSH; SOURCE 5 GENE: BIOA, MT1619; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR COMPLEX TRANSAMINASE PLP, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.C.FINZEL,R.DAI REVDAT 4 27-DEC-23 4W1V 1 REMARK LINK REVDAT 3 22-NOV-17 4W1V 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4W1V 1 REMARK REVDAT 1 04-FEB-15 4W1V 0 JRNL AUTH S.W.PARK,D.E.CASALENA,D.J.WILSON,R.DAI,P.P.NAG,F.LIU, JRNL AUTH 2 J.P.BOYCE,J.A.BITTKER,S.L.SCHREIBER,B.C.FINZEL, JRNL AUTH 3 D.SCHNAPPINGER,C.C.ALDRICH JRNL TITL TARGET-BASED IDENTIFICATION OF WHOLE-CELL ACTIVE INHIBITORS JRNL TITL 2 OF BIOTIN BIOSYNTHESIS IN MYCOBACTERIUM TUBERCULOSIS. JRNL REF CHEM.BIOL. V. 22 76 2015 JRNL REFN ISSN 1074-5521 JRNL PMID 25556942 JRNL DOI 10.1016/J.CHEMBIOL.2014.11.012 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 40217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6387 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6726 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9209 ; 1.351 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 875 ; 5.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;35.625 ;22.317 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 972 ;14.159 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;16.653 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1047 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5153 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4W1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK, D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 2.3.0, D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 102.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 25 MM HEPES, 50 MM NACL, 0.1 REMARK 280 MM TCEP RESERVOIR:9% PEG 8000, 0.1M MAGNESIUM CHLORIDE, 0.1M REMARK 280 HEPES CRYO: 15% PEG 400 IN RESERVOIR SOLUTION, PH 7.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.51950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.11950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.11850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 102.11950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.51950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.11850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 VAL A 33 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 25 OD2 ASP A 160 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 42 CG HIS B 42 CD2 0.054 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 64 61.35 63.08 REMARK 500 TRP A 64 60.94 63.08 REMARK 500 TRP A 65 -4.92 72.91 REMARK 500 MET A 87 106.83 -165.80 REMARK 500 MET A 174 84.61 24.20 REMARK 500 LEU A 177 43.46 -86.24 REMARK 500 THR A 179 -80.68 -44.24 REMARK 500 ASP A 180 36.79 -94.94 REMARK 500 VAL A 222 -55.98 71.23 REMARK 500 LYS A 283 -78.10 44.86 REMARK 500 ALA A 373 46.48 -91.70 REMARK 500 ARG A 403 -119.36 54.89 REMARK 500 MET B 87 109.25 -167.78 REMARK 500 ARG B 148 -13.17 -140.10 REMARK 500 VAL B 222 -50.60 76.77 REMARK 500 LYS B 283 -79.81 50.33 REMARK 500 ALA B 373 47.76 -86.59 REMARK 500 ARG B 403 -121.11 51.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 713 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 7.40 ANGSTROMS REMARK 525 HOH B 709 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B 742 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 770 DISTANCE = 6.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3GS A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3GS B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W1W RELATED DB: PDB REMARK 900 RELATED ID: 4W1X RELATED DB: PDB DBREF 4W1V A 7 435 UNP P9WQ80 BIOA_MYCTO 7 435 DBREF 4W1V B 7 435 UNP P9WQ80 BIOA_MYCTO 7 435 SEQRES 1 A 429 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 2 A 429 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 3 A 429 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 4 A 429 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 5 A 429 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 6 A 429 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 7 A 429 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 8 A 429 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 9 A 429 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 10 A 429 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 11 A 429 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 12 A 429 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 13 A 429 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 14 A 429 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 15 A 429 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 16 A 429 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 17 A 429 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 18 A 429 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 19 A 429 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 20 A 429 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 21 A 429 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 22 A 429 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 23 A 429 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 24 A 429 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 25 A 429 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 26 A 429 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 27 A 429 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 28 A 429 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 29 A 429 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 30 A 429 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 31 A 429 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 32 A 429 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 33 A 429 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER SEQRES 1 B 429 GLY LEU THR PRO GLU GLN ILE ILE ALA VAL ASP GLY ALA SEQRES 2 B 429 HIS LEU TRP HIS PRO TYR SER SER ILE GLY ARG GLU ALA SEQRES 3 B 429 VAL SER PRO VAL VAL ALA VAL ALA ALA HIS GLY ALA TRP SEQRES 4 B 429 LEU THR LEU ILE ARG ASP GLY GLN PRO ILE GLU VAL LEU SEQRES 5 B 429 ASP ALA MET SER SER TRP TRP THR ALA ILE HIS GLY HIS SEQRES 6 B 429 GLY HIS PRO ALA LEU ASP GLN ALA LEU THR THR GLN LEU SEQRES 7 B 429 ARG VAL MET ASN HIS VAL MET PHE GLY GLY LEU THR HIS SEQRES 8 B 429 GLU PRO ALA ALA ARG LEU ALA LYS LEU LEU VAL ASP ILE SEQRES 9 B 429 THR PRO ALA GLY LEU ASP THR VAL PHE PHE SER ASP SER SEQRES 10 B 429 GLY SER VAL SER VAL GLU VAL ALA ALA LYS MET ALA LEU SEQRES 11 B 429 GLN TYR TRP ARG GLY ARG GLY LEU PRO GLY LYS ARG ARG SEQRES 12 B 429 LEU MET THR TRP ARG GLY GLY TYR HIS GLY ASP THR PHE SEQRES 13 B 429 LEU ALA MET SER ILE CYS ASP PRO HIS GLY GLY MET HIS SEQRES 14 B 429 SER LEU TRP THR ASP VAL LEU ALA ALA GLN VAL PHE ALA SEQRES 15 B 429 PRO GLN VAL PRO ARG ASP TYR ASP PRO ALA TYR SER ALA SEQRES 16 B 429 ALA PHE GLU ALA GLN LEU ALA GLN HIS ALA GLY GLU LEU SEQRES 17 B 429 ALA ALA VAL VAL VAL GLU PRO VAL VAL GLN GLY ALA GLY SEQRES 18 B 429 GLY MET ARG PHE HIS ASP PRO ARG TYR LEU HIS ASP LEU SEQRES 19 B 429 ARG ASP ILE CYS ARG ARG TYR GLU VAL LEU LEU ILE PHE SEQRES 20 B 429 ASP GLU ILE ALA THR GLY PHE GLY ARG THR GLY ALA LEU SEQRES 21 B 429 PHE ALA ALA ASP HIS ALA GLY VAL SER PRO ASP ILE MET SEQRES 22 B 429 CYS VAL GLY LYS ALA LEU THR GLY GLY TYR LEU SER LEU SEQRES 23 B 429 ALA ALA THR LEU CYS THR ALA ASP VAL ALA HIS THR ILE SEQRES 24 B 429 SER ALA GLY ALA ALA GLY ALA LEU MET HIS GLY PRO THR SEQRES 25 B 429 PHE MET ALA ASN PRO LEU ALA CYS ALA VAL SER VAL ALA SEQRES 26 B 429 SER VAL GLU LEU LEU LEU GLY GLN ASP TRP ARG THR ARG SEQRES 27 B 429 ILE THR GLU LEU ALA ALA GLY LEU THR ALA GLY LEU ASP SEQRES 28 B 429 THR ALA ARG ALA LEU PRO ALA VAL THR ASP VAL ARG VAL SEQRES 29 B 429 CYS GLY ALA ILE GLY VAL ILE GLU CYS ASP ARG PRO VAL SEQRES 30 B 429 ASP LEU ALA VAL ALA THR PRO ALA ALA LEU ASP ARG GLY SEQRES 31 B 429 VAL TRP LEU ARG PRO PHE ARG ASN LEU VAL TYR ALA MET SEQRES 32 B 429 PRO PRO TYR ILE CYS THR PRO ALA GLU ILE THR GLN ILE SEQRES 33 B 429 THR SER ALA MET VAL GLU VAL ALA ARG LEU VAL GLY SER HET PLP A 501 15 HET 3GS A 502 24 HET PEG A 503 7 HET PLP B 501 15 HET 3GS B 502 24 HET EDO B 503 4 HET CL B 504 1 HET EDO B 505 4 HET EDO B 506 4 HET EDO B 507 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM 3GS DIMETHYL (2R)-5-(3-FLUOROPHENYL)-1H-PYRROLO[1,2-C][1, HETNAM 2 3GS 3]THIAZOLE-6,7-DICARBOXYLATE 2-OXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 3GS 2(C16 H14 F N O5 S) FORMUL 5 PEG C4 H10 O3 FORMUL 8 EDO 4(C2 H6 O2) FORMUL 9 CL CL 1- FORMUL 13 HOH *383(H2 O) HELIX 1 AA1 THR A 9 LEU A 21 1 13 HELIX 2 AA2 MET A 61 THR A 66 1 6 HELIX 3 AA3 HIS A 73 MET A 87 1 15 HELIX 4 AA4 HIS A 97 THR A 111 1 15 HELIX 5 AA5 SER A 123 ARG A 142 1 20 HELIX 6 AA6 THR A 161 ILE A 167 1 7 HELIX 7 AA7 ASP A 196 GLN A 209 1 14 HELIX 8 AA8 HIS A 210 GLY A 212 5 3 HELIX 9 AA9 PRO A 234 GLU A 248 1 15 HELIX 10 AB1 PHE A 267 ALA A 272 5 6 HELIX 11 AB2 ALA A 299 ALA A 307 1 9 HELIX 12 AB3 ASN A 322 GLY A 338 1 17 HELIX 13 AB4 ASP A 340 ASP A 357 1 18 HELIX 14 AB5 THR A 358 LEU A 362 5 5 HELIX 15 AB6 ASP A 384 ARG A 395 1 12 HELIX 16 AB7 THR A 415 GLY A 434 1 20 HELIX 17 AB8 THR B 9 LEU B 21 1 13 HELIX 18 AB9 MET B 61 THR B 66 1 6 HELIX 19 AC1 HIS B 73 MET B 87 1 15 HELIX 20 AC2 HIS B 97 THR B 111 1 15 HELIX 21 AC3 SER B 123 GLY B 141 1 19 HELIX 22 AC4 THR B 161 ILE B 167 1 7 HELIX 23 AC5 MET B 174 THR B 179 5 6 HELIX 24 AC6 ASP B 196 ALA B 211 1 16 HELIX 25 AC7 PRO B 234 GLU B 248 1 15 HELIX 26 AC8 PHE B 267 ALA B 272 5 6 HELIX 27 AC9 THR B 298 GLY B 308 1 11 HELIX 28 AD1 ASN B 322 GLY B 338 1 17 HELIX 29 AD2 ASP B 340 ASP B 357 1 18 HELIX 30 AD3 THR B 358 LEU B 362 5 5 HELIX 31 AD4 ASP B 384 ASP B 394 1 11 HELIX 32 AD5 THR B 415 SER B 435 1 21 SHEET 1 AA1 5 VAL A 397 TRP A 398 0 SHEET 2 AA1 5 GLN A 53 ASP A 59 1 N LEU A 58 O TRP A 398 SHEET 3 AA1 5 TRP A 45 ARG A 50 -1 N ARG A 50 O GLN A 53 SHEET 4 AA1 5 VAL A 36 HIS A 42 -1 N ALA A 40 O THR A 47 SHEET 5 AA1 5 LEU B 95 THR B 96 1 O THR B 96 N ALA A 38 SHEET 1 AA2 5 LEU A 95 THR A 96 0 SHEET 2 AA2 5 VAL B 36 HIS B 42 1 O ALA B 38 N THR A 96 SHEET 3 AA2 5 TRP B 45 ARG B 50 -1 O THR B 47 N VAL B 39 SHEET 4 AA2 5 GLN B 53 ASP B 59 -1 O VAL B 57 N LEU B 46 SHEET 5 AA2 5 VAL B 397 TRP B 398 1 O TRP B 398 N LEU B 58 SHEET 1 AA3 7 LEU A 115 SER A 121 0 SHEET 2 AA3 7 ALA A 293 THR A 298 -1 O THR A 295 N PHE A 119 SHEET 3 AA3 7 ILE A 278 VAL A 281 -1 N MET A 279 O LEU A 296 SHEET 4 AA3 7 LEU A 250 ASP A 254 1 N PHE A 253 O ILE A 278 SHEET 5 AA3 7 LEU A 214 VAL A 219 1 N VAL A 217 O ILE A 252 SHEET 6 AA3 7 ARG A 149 TRP A 153 1 N ARG A 149 O ALA A 215 SHEET 7 AA3 7 VAL A 186 ALA A 188 1 O VAL A 186 N LEU A 150 SHEET 1 AA4 2 VAL A 223 GLN A 224 0 SHEET 2 AA4 2 ARG A 230 PHE A 231 -1 O ARG A 230 N GLN A 224 SHEET 1 AA5 3 VAL A 365 VAL A 370 0 SHEET 2 AA5 3 GLY A 375 CYS A 379 -1 O VAL A 376 N ARG A 369 SHEET 3 AA5 3 LEU A 405 ALA A 408 -1 O VAL A 406 N ILE A 377 SHEET 1 AA6 7 THR B 117 SER B 121 0 SHEET 2 AA6 7 ALA B 293 CYS B 297 -1 O THR B 295 N PHE B 119 SHEET 3 AA6 7 ILE B 278 VAL B 281 -1 N MET B 279 O LEU B 296 SHEET 4 AA6 7 LEU B 250 ASP B 254 1 N PHE B 253 O CYS B 280 SHEET 5 AA6 7 LEU B 214 VAL B 219 1 N VAL B 217 O ILE B 252 SHEET 6 AA6 7 ARG B 149 TRP B 153 1 N ARG B 149 O ALA B 215 SHEET 7 AA6 7 VAL B 186 ALA B 188 1 O ALA B 188 N THR B 152 SHEET 1 AA7 2 VAL B 223 GLN B 224 0 SHEET 2 AA7 2 ARG B 230 PHE B 231 -1 O ARG B 230 N GLN B 224 SHEET 1 AA8 3 VAL B 365 VAL B 370 0 SHEET 2 AA8 3 GLY B 375 CYS B 379 -1 O GLU B 378 N THR B 366 SHEET 3 AA8 3 LEU B 405 ALA B 408 -1 O VAL B 406 N ILE B 377 LINK NZ LYS A 283 C4A PLP A 501 1555 1555 1.88 LINK NZ LYS B 283 C4A PLP B 501 1555 1555 1.75 CISPEP 1 SER A 176 LEU A 177 0 19.28 SITE 1 AC1 18 GLY A 124 SER A 125 TYR A 157 HIS A 158 SITE 2 AC1 18 GLY A 159 GLU A 220 ASP A 254 ILE A 256 SITE 3 AC1 18 ALA A 257 LYS A 283 3GS A 502 HOH A 643 SITE 4 AC1 18 HOH A 648 HOH A 650 HOH A 686 HOH A 698 SITE 5 AC1 18 PRO B 317 THR B 318 SITE 1 AC2 13 PRO A 24 TYR A 25 TRP A 64 TYR A 157 SITE 2 AC2 13 ARG A 400 PHE A 402 PLP A 501 HOH A 686 SITE 3 AC2 13 MET B 91 GLY B 93 GLY B 316 PRO B 317 SITE 4 AC2 13 THR B 318 SITE 1 AC3 4 HIS A 232 PRO A 234 HIS A 271 HOH A 733 SITE 1 AC4 16 THR A 318 HOH A 644 GLY B 124 SER B 125 SITE 2 AC4 16 TYR B 157 HIS B 158 GLU B 220 ASP B 254 SITE 3 AC4 16 ILE B 256 ALA B 257 LYS B 283 3GS B 502 SITE 4 AC4 16 HOH B 659 HOH B 662 HOH B 666 HOH B 674 SITE 1 AC5 13 MET A 91 PHE A 92 GLY A 93 GLY A 316 SITE 2 AC5 13 PRO A 317 THR A 318 PRO B 24 TYR B 25 SITE 3 AC5 13 TRP B 64 TYR B 157 ARG B 400 PLP B 501 SITE 4 AC5 13 HOH B 662 SITE 1 AC6 8 THR B 152 TRP B 153 GLY B 156 HIS B 158 SITE 2 AC6 8 ILE B 167 VAL B 219 GLU B 220 GLN B 224 SITE 1 AC7 1 VAL B 222 SITE 1 AC8 3 LEU B 337 GLN B 339 ASP B 340 SITE 1 AC9 4 HIS A 271 ARG B 246 TYR B 247 HOH B 601 CRYST1 63.039 66.237 204.239 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004896 0.00000