HEADER HYDROLASE 19-AUG-14 4W5Z TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF CHITINASE 60 TITLE 2 FROM PSYCHROPHILIC BACTERIA MORITELLA MARINA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE 60; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.14; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SIGNAL PEPTIDE HAS BEEN PROCESSED BY E. COLI. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO MARINUS; SOURCE 3 ORGANISM_TAXID: 90736; SOURCE 4 GENE: CHI60; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, CATALYTIC DOMAIN, HIGH RESOLUTION, PSYCHROPHILIC KEYWDS 2 CHITINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.H.MALECKI,C.E.VORGIAS,W.RYPNIEWSKI REVDAT 3 10-JAN-24 4W5Z 1 LINK REVDAT 2 02-SEP-15 4W5Z 1 REVDAT 1 26-AUG-15 4W5Z 0 JRNL AUTH P.H.MALECKI,C.E.VORGIAS,W.RYPNIEWSKI JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF JRNL TITL 2 CHITINASE 60 FROM PSYCHROPHILIC BACTERIA MORITELLA MARINA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1772) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 74674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 85.7662 - 2.6310 0.99 9537 146 0.1093 0.1470 REMARK 3 2 2.6310 - 2.0883 1.00 9338 142 0.1053 0.1144 REMARK 3 3 2.0883 - 1.8243 1.00 9244 141 0.0851 0.1311 REMARK 3 4 1.8243 - 1.6575 1.00 9241 140 0.0885 0.1563 REMARK 3 5 1.6575 - 1.5386 1.00 9154 140 0.1049 0.1811 REMARK 3 6 1.5386 - 1.4479 1.00 9194 140 0.1216 0.1926 REMARK 3 7 1.4479 - 1.3754 1.00 9165 139 0.1770 0.2095 REMARK 3 8 1.3754 - 1.3155 0.95 8680 133 0.2867 0.3508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 2733 REMARK 3 ANGLE : 1.817 3741 REMARK 3 CHIRALITY : 0.123 396 REMARK 3 PLANARITY : 0.011 504 REMARK 3 DIHEDRAL : 13.608 985 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976265 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74674 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 85.585 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.420 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.32 REMARK 200 R MERGE FOR SHELL (I) : 1.04300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% V/V MPD, 0.2M AMMONIUM ACETATE AND REMARK 280 0.1M BIS TRIS PH 5.5., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.58450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.58450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.34550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.34300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.34550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.34300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.58450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.34550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.34300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.58450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.34550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.34300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 ILE A 21 REMARK 465 ALA A 22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 201 CB TYR A 201 CG -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 75 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -162.39 -124.21 REMARK 500 ASP A 30 -165.63 -116.17 REMARK 500 ASN A 39 48.16 -81.68 REMARK 500 LYS A 160 -121.34 42.82 REMARK 500 PHE A 219 48.39 -95.81 REMARK 500 VAL A 232 -50.56 -122.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 747 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 792 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 797 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A 852 DISTANCE = 7.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 24 O REMARK 620 2 ASN A 105 OD1 88.4 REMARK 620 3 GLY A 144 O 160.3 103.6 REMARK 620 4 ASP A 146 OD1 87.6 107.3 103.3 REMARK 620 5 HOH A 854 O 70.2 135.2 90.4 110.4 REMARK 620 6 HOH A 854 O 87.1 155.3 75.4 96.8 22.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD2 REMARK 620 2 HOH A 540 O 83.9 REMARK 620 3 HOH A 557 O 82.5 69.5 REMARK 620 4 HOH A 722 O 74.7 72.8 137.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 414 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE2 REMARK 620 2 HOH A 504 O 102.5 REMARK 620 3 HOH A 610 O 107.0 7.4 REMARK 620 4 HOH A 770 O 112.6 10.2 8.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 OD1 REMARK 620 2 HOH A 509 O 65.4 REMARK 620 3 HOH A 573 O 73.5 137.5 REMARK 620 4 HOH A 586 O 78.1 79.1 82.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 601 O REMARK 620 2 HOH A 601 O 161.0 REMARK 620 3 HOH A 611 O 97.0 64.2 REMARK 620 4 HOH A 611 O 68.0 93.3 29.1 REMARK 620 5 HOH A 792 O 82.1 96.0 95.2 92.1 REMARK 620 6 HOH A 792 O 104.9 80.7 94.1 100.0 167.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 501 O REMARK 620 2 HOH A 507 O 82.8 REMARK 620 3 HOH A 578 O 152.5 85.4 REMARK 620 4 HOH A 603 O 95.9 79.3 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 411 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 742 O REMARK 620 2 HOH A 831 O 77.1 REMARK 620 3 HOH A 864 O 74.4 126.7 REMARK 620 4 HOH A 865 O 62.9 61.8 65.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 412 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 868 O REMARK 620 2 HOH A 869 O 105.1 REMARK 620 3 HOH A 870 O 115.7 97.9 REMARK 620 4 HOH A 871 O 73.3 82.1 170.5 REMARK 620 5 HOH A 872 O 77.8 159.5 99.0 79.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 414 DBREF 4W5Z A 1 345 UNP B1VBB0 B1VBB0_VIBMA 1 345 SEQRES 1 A 345 MET LYS LEU LYS SER ILE LEU SER ALA ALA ILE PHE THR SEQRES 2 A 345 GLY LEU PHE SER THR ALA GLY ILE ALA GLY THR ILE THR SEQRES 3 A 345 SER GLN ASP ASP ASN VAL VAL VAL GLY TYR TRP HIS ASN SEQRES 4 A 345 TRP CYS ASP GLY ARG GLY TYR GLN GLY GLY ASN ALA PRO SEQRES 5 A 345 CYS VAL GLU LEU LYS THR VAL ASN PRO GLN TYR ASN VAL SEQRES 6 A 345 VAL ASN ILE SER PHE MET LYS VAL TYR ASP ILE ALA GLU SEQRES 7 A 345 GLY ARG ILE PRO THR PHE LYS LEU ASP PRO THR ILE ALA SEQRES 8 A 345 LEU SER GLU ALA GLU PHE ILE ALA GLN ILE ASP THR LEU SEQRES 9 A 345 ASN SER GLN GLY ARG SER VAL LEU ILE ALA LEU GLY GLY SEQRES 10 A 345 ALA ASP ALA HIS ILE GLU LEU THR ARG GLY ASP GLU ASP SEQRES 11 A 345 ALA LEU ALA ALA GLU ILE ILE ARG LEU THR ASP LEU TYR SEQRES 12 A 345 GLY PHE ASP GLY LEU ASP ILE ASP LEU GLU GLN ALA ALA SEQRES 13 A 345 ILE THR ALA LYS ASP ASN GLN PHE VAL ILE PRO ALA ALA SEQRES 14 A 345 LEU LYS MET VAL LYS GLU HIS TYR ARG LYS THR GLY ASP SEQRES 15 A 345 ASN PHE MET ILE THR MET ALA PRO GLU PHE PRO TYR LEU SEQRES 16 A 345 THR ALA ASN GLY ALA TYR THR PRO TYR LEU THR GLU LEU SEQRES 17 A 345 ASP GLY TYR TYR ASP PHE ILE ASN PRO GLN PHE TYR ASN SEQRES 18 A 345 GLN GLY GLY ASP GLY LEU TRP ILE GLU GLY VAL GLY TRP SEQRES 19 A 345 ILE ALA GLN ASN ASN ASP ALA LEU LYS GLU GLU PHE ILE SEQRES 20 A 345 TYR TYR ILE ALA ASP SER LEU ILE ASN GLY THR ARG ASN SEQRES 21 A 345 TYR HIS LYS ILE PRO HIS ASP LYS LEU VAL PHE GLY LEU SEQRES 22 A 345 PRO SER ASN ILE ASP ALA ALA ALA THR GLY TYR ILE GLN SEQRES 23 A 345 ASP PRO GLN ASP LEU TYR LYS ALA PHE ASP ARG LEU LYS SEQRES 24 A 345 ALA GLN GLY GLN PRO LEU ARG GLY VAL MET THR TRP SER SEQRES 25 A 345 VAL ASN TRP ASP MET GLY THR ASP ALA ALA ASN ASN SER SEQRES 26 A 345 TYR ASN GLN GLN PHE ILE LYS ASP TYR GLY ASN PHE ILE SEQRES 27 A 345 HIS ASN GLN LEU PRO PRO VAL HET NA A 401 1 HET MPD A 402 22 HET NA A 403 1 HET ACT A 404 7 HET NA A 405 1 HET NA A 406 1 HET NA A 407 1 HET CL A 408 1 HET CL A 409 1 HET ACT A 410 7 HET NA A 411 1 HET NA A 412 1 HET ACT A 413 7 HET NA A 414 1 HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION FORMUL 2 NA 8(NA 1+) FORMUL 3 MPD C6 H14 O2 FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 9 CL 2(CL 1-) FORMUL 16 HOH *374(H2 O) HELIX 1 AA1 GLU A 55 VAL A 59 5 5 HELIX 2 AA2 ASP A 75 GLY A 79 5 5 HELIX 3 AA3 ASP A 87 ALA A 91 5 5 HELIX 4 AA4 SER A 93 GLN A 107 1 15 HELIX 5 AA5 ASP A 128 GLY A 144 1 17 HELIX 6 AA6 GLN A 154 ILE A 157 5 4 HELIX 7 AA7 ASP A 161 LYS A 179 1 19 HELIX 8 AA8 GLU A 191 THR A 196 5 6 HELIX 9 AA9 TYR A 201 LEU A 208 1 8 HELIX 10 AB1 ASN A 239 ALA A 241 5 3 HELIX 11 AB2 LEU A 242 GLY A 257 1 16 HELIX 12 AB3 PRO A 265 LYS A 268 5 4 HELIX 13 AB4 ASP A 287 GLN A 301 1 15 HELIX 14 AB5 SER A 312 MET A 317 1 6 HELIX 15 AB6 GLN A 328 ASN A 340 1 13 SHEET 1 AA1 8 PHE A 214 ILE A 215 0 SHEET 2 AA1 8 MET A 185 MET A 188 1 O ILE A 186 N PHE A 214 SHEET 3 AA1 8 GLY A 147 LEU A 152 1 N ILE A 150 O THR A 187 SHEET 4 AA1 8 SER A 110 GLY A 117 1 N LEU A 115 O ASP A 151 SHEET 5 AA1 8 VAL A 65 MET A 71 1 N ILE A 68 O ALA A 114 SHEET 6 AA1 8 VAL A 32 HIS A 38 1 N TRP A 37 O ASN A 67 SHEET 7 AA1 8 GLY A 307 TRP A 311 1 O VAL A 308 N VAL A 34 SHEET 8 AA1 8 VAL A 270 PRO A 274 1 N PHE A 271 O GLY A 307 SHEET 1 AA2 2 GLY A 43 ARG A 44 0 SHEET 2 AA2 2 ASN A 50 ALA A 51 -1 O ALA A 51 N GLY A 43 SHEET 1 AA3 2 GLY A 226 ILE A 229 0 SHEET 2 AA3 2 GLY A 233 ALA A 236 -1 O GLY A 233 N ILE A 229 SSBOND 1 CYS A 41 CYS A 53 1555 1555 2.22 LINK O THR A 24 NA NA A 401 1555 1555 2.39 LINK OD2BASP A 30 NA NA A 407 1555 1555 2.23 LINK OE2 GLU A 94 NA NA A 414 1555 3554 2.28 LINK OD1 ASN A 105 NA NA A 401 1555 1555 2.26 LINK O GLY A 144 NA NA A 401 1555 1555 2.26 LINK OD1 ASP A 146 NA NA A 401 1555 1555 2.27 LINK OD1 ASP A 225 NA NA A 403 1555 1555 2.88 LINK NA NA A 401 O AHOH A 854 1555 1555 2.32 LINK NA NA A 401 O BHOH A 854 1555 1555 2.47 LINK NA NA A 403 O HOH A 509 1555 1555 2.22 LINK NA NA A 403 O HOH A 573 1555 1555 2.17 LINK NA NA A 403 O HOH A 586 1555 1555 2.70 LINK NA NA A 405 O HOH A 601 1555 1555 2.16 LINK NA NA A 405 O HOH A 601 1555 3554 2.34 LINK NA NA A 405 O HOH A 611 1555 1555 2.18 LINK NA NA A 405 O HOH A 611 1555 3554 2.13 LINK NA NA A 405 O HOH A 792 1555 1555 2.24 LINK NA NA A 405 O HOH A 792 1555 3554 2.13 LINK NA NA A 406 O HOH A 501 1555 1555 2.11 LINK NA NA A 406 O HOH A 507 1555 1555 2.33 LINK NA NA A 406 O HOH A 578 1555 1555 2.08 LINK NA NA A 406 O HOH A 603 1555 1555 2.07 LINK NA NA A 407 O HOH A 540 1555 1555 2.38 LINK NA NA A 407 O HOH A 557 1555 1555 2.23 LINK NA NA A 407 O HOH A 722 1555 1555 2.60 LINK NA NA A 411 O HOH A 742 1555 1555 2.70 LINK NA NA A 411 O HOH A 831 1555 1555 2.27 LINK NA NA A 411 O HOH A 864 1555 1555 2.11 LINK NA NA A 411 O HOH A 865 1555 1555 2.53 LINK NA NA A 412 O HOH A 868 1555 1555 2.35 LINK NA NA A 412 O HOH A 869 1555 1555 2.23 LINK NA NA A 412 O HOH A 870 1555 1555 2.15 LINK NA NA A 412 O HOH A 871 1555 1555 2.18 LINK NA NA A 412 O HOH A 872 1555 1555 2.49 LINK NA NA A 414 O HOH A 504 1555 1555 2.33 LINK NA NA A 414 O HOH A 610 1555 1555 2.19 LINK NA NA A 414 O HOH A 770 1555 3554 2.88 CISPEP 1 SER A 69 PHE A 70 0 12.58 CISPEP 2 TRP A 311 SER A 312 0 10.18 SITE 1 AC1 5 THR A 24 ASN A 105 GLY A 144 ASP A 146 SITE 2 AC1 5 HOH A 854 SITE 1 AC2 8 ARG A 44 TYR A 46 ASP A 278 ALA A 279 SITE 2 AC2 8 TRP A 311 TRP A 315 CL A 408 HOH A 634 SITE 1 AC3 4 ASP A 225 HOH A 509 HOH A 573 HOH A 586 SITE 1 AC4 7 TYR A 36 ASP A 151 GLN A 218 TYR A 220 SITE 2 AC4 7 TRP A 311 HOH A 674 HOH A 714 SITE 1 AC5 3 HOH A 601 HOH A 611 HOH A 792 SITE 1 AC6 4 HOH A 501 HOH A 507 HOH A 578 HOH A 603 SITE 1 AC7 4 ASP A 30 HOH A 540 HOH A 557 HOH A 722 SITE 1 AC8 3 TRP A 40 GLY A 43 MPD A 402 SITE 1 AC9 5 VAL A 54 GLU A 55 THR A 58 ARG A 126 SITE 2 AC9 5 HOH A 510 SITE 1 AD1 4 CYS A 53 VAL A 54 ILE A 90 HOH A 596 SITE 1 AD2 4 HOH A 742 HOH A 831 HOH A 864 HOH A 865 SITE 1 AD3 6 HIS A 266 HOH A 868 HOH A 869 HOH A 870 SITE 2 AD3 6 HOH A 871 HOH A 872 SITE 1 AD4 3 ARG A 44 GLY A 45 TYR A 46 SITE 1 AD5 5 LYS A 85 GLU A 94 HOH A 504 HOH A 610 SITE 2 AD5 5 HOH A 770 CRYST1 50.691 72.686 171.169 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013758 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005842 0.00000