HEADER HYDROLASE 20-AUG-14 4W65 TITLE CRYSTAL STRUCTURE OF GLYCOSYL HYDROLASE FAMILY PROTEIN FROM TITLE 2 MYCOBACTERIUM FORTUITUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM FORTUITUM SUBSP. FORTUITUM DSM SOURCE 3 46621; SOURCE 4 ORGANISM_TAXID: 1214102; SOURCE 5 ATCC: 6841; SOURCE 6 GENE: MFORT_18233; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, GLYCOSYL HYDROLASE FAMILY PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-SEP-23 4W65 1 SOURCE KEYWDS REMARK REVDAT 3 29-OCT-14 4W65 1 JRNL REVDAT 2 22-OCT-14 4W65 1 JRNL REVDAT 1 03-SEP-14 4W65 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),D.R.DAVIES,D.M.DRANOW,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF GLYCOSYL HYDROLASE FAMILY PROTEIN JRNL TITL 2 (RV0315 ORTHOLOG) FROM MYCOBACTERIUM FORTUITUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1769) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 47222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.0098 - 3.5473 0.99 2949 161 0.1441 0.1363 REMARK 3 2 3.5473 - 2.8159 0.99 2847 144 0.1464 0.1798 REMARK 3 3 2.8159 - 2.4601 0.99 2790 141 0.1606 0.1733 REMARK 3 4 2.4601 - 2.2352 0.99 2781 123 0.1519 0.1815 REMARK 3 5 2.2352 - 2.0750 0.98 2727 142 0.1403 0.1617 REMARK 3 6 2.0750 - 1.9527 0.98 2717 159 0.1350 0.1635 REMARK 3 7 1.9527 - 1.8549 0.98 2706 130 0.1422 0.1724 REMARK 3 8 1.8549 - 1.7741 0.97 2667 153 0.1523 0.1710 REMARK 3 9 1.7741 - 1.7058 0.96 2652 125 0.1476 0.1841 REMARK 3 10 1.7058 - 1.6470 0.95 2611 147 0.1547 0.1944 REMARK 3 11 1.6470 - 1.5955 0.95 2629 125 0.1608 0.1725 REMARK 3 12 1.5955 - 1.5499 0.94 2592 144 0.1615 0.1929 REMARK 3 13 1.5499 - 1.5091 0.92 2504 128 0.1800 0.2060 REMARK 3 14 1.5091 - 1.4723 0.91 2506 136 0.1861 0.2398 REMARK 3 15 1.4723 - 1.4388 0.90 2456 114 0.1935 0.1969 REMARK 3 16 1.4388 - 1.4082 0.87 2405 125 0.2061 0.2171 REMARK 3 17 1.4082 - 1.3800 0.87 2355 131 0.2086 0.2320 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1919 REMARK 3 ANGLE : 1.114 2618 REMARK 3 CHIRALITY : 0.079 258 REMARK 3 PLANARITY : 0.006 341 REMARK 3 DIHEDRAL : 11.946 647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1778 2.8326 -5.6879 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.0882 REMARK 3 T33: 0.1548 T12: 0.0265 REMARK 3 T13: 0.0224 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.1402 L22: 1.7934 REMARK 3 L33: 1.8489 L12: 1.1434 REMARK 3 L13: -0.2242 L23: -0.4344 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0023 S13: 0.3566 REMARK 3 S21: 0.0808 S22: -0.0106 S23: 0.2485 REMARK 3 S31: -0.1214 S32: -0.0178 S33: 0.0127 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8069 -11.5962 -22.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.2141 REMARK 3 T33: 0.1463 T12: 0.0015 REMARK 3 T13: 0.0244 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.8044 L22: 3.3079 REMARK 3 L33: 0.4140 L12: -2.4465 REMARK 3 L13: -0.8679 L23: 1.1753 REMARK 3 S TENSOR REMARK 3 S11: 0.2438 S12: 0.4191 S13: 0.0455 REMARK 3 S21: -0.5793 S22: -0.1684 S23: -0.1543 REMARK 3 S31: -0.2460 S32: -0.0756 S33: -0.1105 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5100 -10.8896 -11.3428 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0728 REMARK 3 T33: 0.0584 T12: 0.0059 REMARK 3 T13: -0.0012 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.0444 L22: 0.9303 REMARK 3 L33: 0.9302 L12: 0.0349 REMARK 3 L13: -0.1531 L23: 0.2375 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.1344 S13: 0.0193 REMARK 3 S21: 0.0373 S22: -0.0013 S23: 0.1025 REMARK 3 S31: 0.0566 S32: -0.0571 S33: 0.0280 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0270 -11.8977 -12.5204 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.1119 REMARK 3 T33: 0.0754 T12: 0.0108 REMARK 3 T13: -0.0017 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6460 L22: 2.3310 REMARK 3 L33: 0.8839 L12: 0.4896 REMARK 3 L13: -0.1754 L23: 0.0742 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.2226 S13: -0.0307 REMARK 3 S21: -0.1335 S22: 0.0597 S23: -0.1187 REMARK 3 S31: 0.0446 S32: 0.0541 S33: -0.0036 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5347 -9.1271 -12.5253 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1298 REMARK 3 T33: 0.1160 T12: -0.0135 REMARK 3 T13: 0.0015 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.0911 L22: 2.9092 REMARK 3 L33: 5.0812 L12: 1.2713 REMARK 3 L13: -2.0926 L23: -2.9464 REMARK 3 S TENSOR REMARK 3 S11: -0.2434 S12: 0.3288 S13: -0.0344 REMARK 3 S21: -0.3771 S22: 0.0093 S23: -0.2694 REMARK 3 S31: 0.4175 S32: 0.0419 S33: 0.2215 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6208 0.2693 -4.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.0924 T22: 0.0867 REMARK 3 T33: 0.0942 T12: -0.0240 REMARK 3 T13: -0.0111 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.7110 L22: 0.8812 REMARK 3 L33: 2.4103 L12: -0.2005 REMARK 3 L13: -1.1303 L23: -0.7406 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0547 S13: 0.1974 REMARK 3 S21: 0.0530 S22: -0.0473 S23: -0.1255 REMARK 3 S31: -0.1668 S32: 0.2256 S33: -0.0044 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2791 -6.7181 -12.1305 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.0868 REMARK 3 T33: 0.0504 T12: 0.0108 REMARK 3 T13: -0.0076 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.2616 L22: 0.7667 REMARK 3 L33: 0.7241 L12: 0.0579 REMARK 3 L13: -0.2316 L23: 0.0558 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.1425 S13: 0.1060 REMARK 3 S21: 0.0085 S22: 0.0092 S23: -0.0055 REMARK 3 S31: -0.0146 S32: 0.0413 S33: -0.0079 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48609 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES, PHASER REMARK 200 STARTING MODEL: 3RQ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EBS INTERNAL TRACKING NUMBER 500 MM REMARK 280 NACL, 2 MM DTT, 0.025% SODIUM AZIDE, 5% GLYCEROL, 0.4 LISO4; 20% REMARK 280 EG ADDED AS CRYOPROTECTANT, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.99500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.64000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.64000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.99500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 MET A 9 REMARK 465 MET A 10 REMARK 465 MET A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 PRO A 25 REMARK 465 HIS A 26 REMARK 465 ALA A 27 REMARK 465 GLN A 28 REMARK 465 ALA A 29 REMARK 465 LEU A 30 REMARK 465 PRO A 31 REMARK 465 THR A 32 REMARK 465 LYS A 33 REMARK 465 PRO A 34 REMARK 465 GLN A 35 REMARK 465 THR A 36 REMARK 465 PRO A 37 REMARK 465 PRO A 38 REMARK 465 VAL A 39 REMARK 465 PRO A 40 REMARK 465 VAL A 41 REMARK 465 PRO A 42 REMARK 465 SER A 43 REMARK 465 ALA A 44 REMARK 465 PRO A 45 REMARK 465 GLN A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 49 CG1 CG2 REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 THR A 78 OG1 CG2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 SER A 185 OG REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 198 -169.61 -104.48 REMARK 500 TRP A 237 114.88 -38.76 REMARK 500 ALA A 255 -143.25 58.83 REMARK 500 GLU A 260 -137.67 45.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 O REMARK 620 2 GLY A 107 O 81.1 REMARK 620 3 ASP A 274 O 80.0 85.9 REMARK 620 4 ASP A 274 OD1 154.6 93.6 74.9 REMARK 620 5 EDO A1004 O1 136.2 84.2 139.7 66.9 REMARK 620 6 EDO A1004 O2 76.5 103.8 152.7 128.6 67.4 REMARK 620 7 HOH A1286 O 101.8 174.3 89.7 81.7 96.8 81.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 DBREF 4W65 A 1 279 UNP K0UYS3 K0UYS3_MYCFO 1 279 SEQRES 1 A 279 MET ALA ASN LEU ASP ARG ARG LYS MET MET MET LEU SER SEQRES 2 A 279 GLY LEU GLY VAL MET ALA ALA ALA LEU PRO ALA PRO HIS SEQRES 3 A 279 ALA GLN ALA LEU PRO THR LYS PRO GLN THR PRO PRO VAL SEQRES 4 A 279 PRO VAL PRO SER ALA PRO GLN ALA ALA VAL ASN TYR VAL SEQRES 5 A 279 PHE ALA ASP GLU PHE ASP GLY PRO ALA GLY SER SER PRO SEQRES 6 A 279 ASN THR SER LYS TRP THR ILE ALA LYS ALA ARG GLU THR SEQRES 7 A 279 ILE LYS ASP PRO THR TYR TRP GLU GLN PRO GLY ARG ILE SEQRES 8 A 279 GLY GLN TYR ARG ASP ASP ARG LYS ASN ALA PHE LEU ASP SEQRES 9 A 279 GLY LYS GLY ASN LEU VAL ILE ARG ALA THR LYS GLU GLY SEQRES 10 A 279 ASP THR TYR TYR GLY ALA LYS LEU ALA SER VAL TRP GLU SEQRES 11 A 279 GLY GLY ALA GLY HIS THR TRP GLU ALA ARG ILE LYS PHE SEQRES 12 A 279 ASN CYS LEU THR ALA GLY ALA TRP PRO ALA PHE TRP LEU SEQRES 13 A 279 GLY THR LEU GLY GLU GLY GLU LEU ASP ILE VAL GLU TRP SEQRES 14 A 279 TYR GLY ASN GLY LYS TRP PRO SER ALA THR THR VAL HIS SEQRES 15 A 279 ALA LYS SER ASN GLY GLY GLU TRP GLU THR HIS ASN ILE SEQRES 16 A 279 ALA VAL ASP THR ALA TRP HIS THR TRP ARG THR GLN TRP SEQRES 17 A 279 ASP ALA ASN GLY ALA ARG PHE TRP GLN ASP TYR THR GLU SEQRES 18 A 279 GLY ALA LYS PRO TYR PHE GLU VAL SER ALA SER GLN LEU SEQRES 19 A 279 PRO ASP TRP PRO PHE ASN GLN PRO GLY TYR THR MET PHE SEQRES 20 A 279 VAL VAL LEU ASN LEU ALA VAL ALA GLY SER GLY GLY GLU SEQRES 21 A 279 ASP PRO SER GLY GLY THR TYR PRO ALA ASP MET LEU VAL SEQRES 22 A 279 ASP TYR VAL ARG VAL TRP HET CA A1001 1 HET EDO A1002 4 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA CA 2+ FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *250(H2 O) HELIX 1 AA1 THR A 83 GLN A 87 5 5 HELIX 2 AA2 SER A 232 LEU A 234 5 3 HELIX 3 AA3 ALA A 255 GLU A 260 1 6 SHEET 1 AA112 TRP A 190 ASN A 194 0 SHEET 2 AA112 ALA A 178 HIS A 182 -1 N VAL A 181 O GLU A 191 SHEET 3 AA112 GLU A 163 GLU A 168 -1 N ASP A 165 O THR A 180 SHEET 4 AA112 ALA A 150 GLY A 157 -1 N LEU A 156 O LEU A 164 SHEET 5 AA112 PHE A 247 VAL A 254 -1 O VAL A 249 N TRP A 155 SHEET 6 AA112 THR A 119 SER A 127 -1 N LEU A 125 O LEU A 250 SHEET 7 AA112 LEU A 109 GLU A 116 -1 N GLU A 116 O THR A 119 SHEET 8 AA112 ALA A 269 VAL A 278 -1 O VAL A 273 N LEU A 109 SHEET 9 AA112 HIS A 135 ASN A 144 -1 N LYS A 142 O LEU A 272 SHEET 10 AA112 TRP A 201 TRP A 208 -1 O THR A 206 N TRP A 137 SHEET 11 AA112 GLY A 212 GLN A 217 -1 O TRP A 216 N ARG A 205 SHEET 12 AA112 PHE A 227 SER A 230 -1 O VAL A 229 N ALA A 213 SHEET 1 AA2 2 PHE A 53 ASP A 55 0 SHEET 2 AA2 2 ALA A 269 VAL A 278 -1 O VAL A 278 N PHE A 53 SHEET 1 AA3 2 ALA A 101 LEU A 103 0 SHEET 2 AA3 2 LEU A 109 GLU A 116 -1 O VAL A 110 N PHE A 102 SHEET 1 AA4 3 TRP A 70 ILE A 72 0 SHEET 2 AA4 3 THR A 119 SER A 127 -1 O ALA A 126 N THR A 71 SHEET 3 AA4 3 GLN A 93 TYR A 94 1 N GLN A 93 O TYR A 120 LINK O GLU A 56 CA CA A1001 1555 1555 2.40 LINK O GLY A 107 CA CA A1001 1555 1555 2.29 LINK O ASP A 274 CA CA A1001 1555 1555 2.34 LINK OD1 ASP A 274 CA CA A1001 1555 1555 2.36 LINK CA CA A1001 O1 EDO A1004 1555 1555 2.56 LINK CA CA A1001 O2 EDO A1004 1555 1555 2.59 LINK CA CA A1001 O HOH A1286 1555 1555 2.33 CISPEP 1 TYR A 267 PRO A 268 0 3.06 SITE 1 AC1 5 GLU A 56 GLY A 107 ASP A 274 EDO A1004 SITE 2 AC1 5 HOH A1286 SITE 1 AC2 8 TRP A 151 ALA A 153 TRP A 155 GLU A 163 SITE 2 AC2 8 GLU A 168 HOH A1295 HOH A1313 HOH A1344 SITE 1 AC3 2 GLU A 189 TRP A 190 SITE 1 AC4 7 GLU A 56 ASP A 58 LYS A 106 GLY A 107 SITE 2 AC4 7 ASP A 274 CA A1001 HOH A1286 SITE 1 AC5 3 GLY A 134 ASP A 209 HOH A1222 CRYST1 45.990 57.840 89.280 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021744 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011201 0.00000