HEADER FLUORESCENT PROTEIN 20-AUG-14 4W6S TITLE CRYSTAL STRUCTURE OF FULL-LENGTH SPLIT GFP MUTANT K126C DISULFIDE TITLE 2 DIMER, P 43 21 2 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN E124H/K126C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS FLUORESCENT PROTEIN, DIMER, DISULFIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LEIBLY,G.S.WALDO,T.O.YEATES REVDAT 6 15-NOV-23 4W6S 1 REMARK REVDAT 5 27-SEP-23 4W6S 1 REMARK REVDAT 4 25-DEC-19 4W6S 1 REMARK REVDAT 3 27-SEP-17 4W6S 1 JRNL REMARK REVDAT 2 27-JAN-16 4W6S 1 JRNL REVDAT 1 18-FEB-15 4W6S 0 JRNL AUTH D.J.LEIBLY,M.A.ARBING,I.PASHKOV,N.DEVORE,G.S.WALDO, JRNL AUTH 2 T.C.TERWILLIGER,T.O.YEATES JRNL TITL A SUITE OF ENGINEERED GFP MOLECULES FOR OLIGOMERIC JRNL TITL 2 SCAFFOLDING. JRNL REF STRUCTURE V. 23 1754 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26278175 JRNL DOI 10.1016/J.STR.2015.07.008 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 68.2961 - 7.0952 1.00 1369 151 0.2500 0.3173 REMARK 3 2 7.0952 - 5.6325 1.00 1275 141 0.2410 0.2882 REMARK 3 3 5.6325 - 4.9208 1.00 1263 141 0.1979 0.2760 REMARK 3 4 4.9208 - 4.4710 1.00 1239 138 0.1732 0.1939 REMARK 3 5 4.4710 - 4.1506 1.00 1233 137 0.1889 0.2183 REMARK 3 6 4.1506 - 3.9059 1.00 1231 136 0.2032 0.2638 REMARK 3 7 3.9059 - 3.7103 1.00 1211 135 0.2177 0.2923 REMARK 3 8 3.7103 - 3.5488 1.00 1226 136 0.2292 0.2830 REMARK 3 9 3.5488 - 3.4122 1.00 1197 133 0.2656 0.3176 REMARK 3 10 3.4122 - 3.2944 0.99 1206 135 0.2607 0.2913 REMARK 3 11 3.2944 - 3.1914 1.00 1217 135 0.2779 0.3239 REMARK 3 12 3.1914 - 3.1002 1.00 1208 134 0.2815 0.3739 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3608 REMARK 3 ANGLE : 1.550 4870 REMARK 3 CHIRALITY : 0.099 524 REMARK 3 PLANARITY : 0.008 623 REMARK 3 DIHEDRAL : 16.006 1317 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 4:227) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8985 -8.9459 -13.3118 REMARK 3 T TENSOR REMARK 3 T11: 0.7191 T22: 0.2757 REMARK 3 T33: 0.4264 T12: 0.0067 REMARK 3 T13: 0.0244 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.0108 L22: 2.9546 REMARK 3 L33: 4.2712 L12: 0.4174 REMARK 3 L13: 1.0824 L23: 0.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.2109 S12: -0.0497 S13: 0.4076 REMARK 3 S21: -0.0796 S22: 0.0871 S23: 0.0221 REMARK 3 S31: -0.6890 S32: -0.0489 S33: 0.0698 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 4:227) REMARK 3 ORIGIN FOR THE GROUP (A): -51.3101 -20.4433 8.2215 REMARK 3 T TENSOR REMARK 3 T11: 0.5193 T22: 1.1705 REMARK 3 T33: 0.5975 T12: -0.0255 REMARK 3 T13: 0.0414 T23: -0.0679 REMARK 3 L TENSOR REMARK 3 L11: 4.1450 L22: 1.8525 REMARK 3 L33: 3.2446 L12: -0.6084 REMARK 3 L13: 0.0318 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: 0.2248 S13: -0.0377 REMARK 3 S21: -0.2306 S22: -0.1280 S23: 0.2196 REMARK 3 S31: 0.0843 S32: -1.1697 S33: 0.0782 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16549 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 68.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.25700 REMARK 200 FOR THE DATA SET : 18.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG300, 0.1M PHOSPHATE-CITRATE PH REMARK 280 4.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.55500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.75500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.83250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.75500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.27750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.75500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.75500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.83250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.75500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.75500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.27750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.55500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 PRO A 192 REMARK 465 VAL A 193 REMARK 465 GLY A 228 REMARK 465 ILE A 229 REMARK 465 THR A 230 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 ASP B 190 REMARK 465 GLY B 191 REMARK 465 PRO B 192 REMARK 465 VAL B 193 REMARK 465 GLY B 228 REMARK 465 ILE B 229 REMARK 465 THR B 230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 117 CG OD1 OD2 REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 188 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 69 N PHE A 71 1.95 REMARK 500 O GLN B 69 N PHE B 71 2.00 REMARK 500 O GLN A 69 N SER A 72 2.08 REMARK 500 O GLN B 69 N SER B 72 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 32 OD2 ASP B 133 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 68 N VAL B 68 CA -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 68 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 VAL B 68 N - CA - CB ANGL. DEV. = 15.2 DEGREES REMARK 500 VAL B 68 N - CA - C ANGL. DEV. = -31.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 22 -136.49 55.14 REMARK 500 THR A 62 8.22 87.06 REMARK 500 ASP A 103 -162.74 -161.33 REMARK 500 ASP A 129 14.55 83.06 REMARK 500 ALA B 70 -30.82 -34.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 62 THR A 63 149.90 REMARK 500 ALA A 87 MET A 88 -135.72 REMARK 500 PRO A 89 GLU A 90 -137.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4W6A RELATED DB: PDB REMARK 900 RELATED ID: 4W6B RELATED DB: PDB REMARK 900 RELATED ID: 4W6C RELATED DB: PDB REMARK 900 RELATED ID: 4W6D RELATED DB: PDB REMARK 900 RELATED ID: 4W6F RELATED DB: PDB REMARK 900 RELATED ID: 4W6G RELATED DB: PDB REMARK 900 RELATED ID: 4W6H RELATED DB: PDB REMARK 900 RELATED ID: 4W6I RELATED DB: PDB REMARK 900 RELATED ID: 4W6J RELATED DB: PDB REMARK 900 RELATED ID: 4W6K RELATED DB: PDB REMARK 900 RELATED ID: 4W6L RELATED DB: PDB REMARK 900 RELATED ID: 4W6M RELATED DB: PDB REMARK 900 RELATED ID: 4W6N RELATED DB: PDB REMARK 900 RELATED ID: 4W6O RELATED DB: PDB REMARK 900 RELATED ID: 4W6P RELATED DB: PDB REMARK 900 RELATED ID: 4W6R RELATED DB: PDB REMARK 900 RELATED ID: 4W69 RELATED DB: PDB REMARK 900 RELATED ID: 4W6T RELATED DB: PDB REMARK 900 RELATED ID: 4W6U RELATED DB: PDB REMARK 900 RELATED ID: 4W72 RELATED DB: PDB REMARK 900 RELATED ID: 4W73 RELATED DB: PDB REMARK 900 RELATED ID: 4W74 RELATED DB: PDB REMARK 900 RELATED ID: 4W75 RELATED DB: PDB REMARK 900 RELATED ID: 4W76 RELATED DB: PDB REMARK 900 RELATED ID: 4W77 RELATED DB: PDB REMARK 900 RELATED ID: 4W7A RELATED DB: PDB REMARK 900 RELATED ID: 4W7C RELATED DB: PDB REMARK 900 RELATED ID: 4W7D RELATED DB: PDB REMARK 900 RELATED ID: 4W7E RELATED DB: PDB REMARK 900 RELATED ID: 4W7F RELATED DB: PDB REMARK 900 RELATED ID: 4W7R RELATED DB: PDB REMARK 900 RELATED ID: 4W7X RELATED DB: PDB DBREF 4W6S A 0 230 PDB 4W6S 4W6S 0 230 DBREF 4W6S B 0 230 PDB 4W6S 4W6S 0 230 SEQRES 1 A 229 GLY MET ARG LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 229 PRO ILE LEU ILE GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 229 LYS PHE PHE VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 229 ILE GLY LYS LEU SER LEU LYS PHE ILE ALA THR THR GLY SEQRES 5 A 229 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 A 229 CRO VAL GLN ALA PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 229 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 229 VAL GLN GLU ARG THR ILE TYR PHE LYS ASP ASP GLY THR SEQRES 9 A 229 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 229 LEU VAL ASN ARG ILE HIS LEU CYS GLY ILE ASP PHE LYS SEQRES 11 A 229 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 229 PHE ASN SER HIS LYS VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 A 229 ASN ASN GLY ILE LYS ALA ASN PHE THR ILE ARG HIS ASN SEQRES 14 A 229 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 229 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL ASP LEU PRO SEQRES 16 A 229 ASP ASP HIS TYR LEU SER THR GLN THR ILE LEU SER LYS SEQRES 17 A 229 ASP LEU ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 229 TYR VAL THR ALA ALA GLY ILE THR SEQRES 1 B 229 GLY MET ARG LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 B 229 PRO ILE LEU ILE GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 B 229 LYS PHE PHE VAL ARG GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 B 229 ILE GLY LYS LEU SER LEU LYS PHE ILE ALA THR THR GLY SEQRES 5 B 229 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU SEQRES 6 B 229 CRO VAL GLN ALA PHE SER ARG TYR PRO ASP HIS MET LYS SEQRES 7 B 229 ARG HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 B 229 VAL GLN GLU ARG THR ILE TYR PHE LYS ASP ASP GLY THR SEQRES 9 B 229 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 B 229 LEU VAL ASN ARG ILE HIS LEU CYS GLY ILE ASP PHE LYS SEQRES 11 B 229 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 B 229 PHE ASN SER HIS LYS VAL TYR ILE THR ALA ASP LYS GLN SEQRES 13 B 229 ASN ASN GLY ILE LYS ALA ASN PHE THR ILE ARG HIS ASN SEQRES 14 B 229 VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 B 229 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL ASP LEU PRO SEQRES 16 B 229 ASP ASP HIS TYR LEU SER THR GLN THR ILE LEU SER LYS SEQRES 17 B 229 ASP LEU ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 B 229 TYR VAL THR ALA ALA GLY ILE THR HET CRO A 66 22 HET CRO B 66 22 HET PO4 A 301 5 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET PO4 B 301 5 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL 7(C3 H8 O3) HELIX 1 AA1 GLU A 5 THR A 9 5 5 HELIX 2 AA2 PRO A 56 VAL A 61 1 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 ASP A 82 5 8 HELIX 5 AA5 GLY B 4 THR B 9 5 6 HELIX 6 AA6 PRO B 56 VAL B 61 1 6 HELIX 7 AA7 VAL B 68 SER B 72 5 5 HELIX 8 AA8 MET B 78 ASP B 82 5 5 HELIX 9 AA9 PHE B 84 MET B 88 5 5 SHEET 1 AA112 VAL A 11 GLY A 20 0 SHEET 2 AA112 PHE A 27 ASP A 36 -1 O GLY A 31 N ILE A 16 SHEET 3 AA112 LYS A 41 ALA A 48 -1 O ILE A 47 N ARG A 30 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 208 O VAL A 219 SHEET 6 AA112 LYS A 149 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O ASN A 185 N ILE A 161 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 AA112 THR A 105 GLU A 115 -1 O ALA A 110 N GLN A 94 SHEET 11 AA112 THR A 118 ILE A 128 -1 O CYS A 126 N LYS A 107 SHEET 12 AA112 VAL A 11 GLY A 20 1 N PRO A 13 O LEU A 119 SHEET 1 AA212 VAL B 11 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O GLY B 31 N ILE B 16 SHEET 3 AA212 LYS B 41 ALA B 48 -1 O LYS B 45 N GLU B 32 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 AA212 HIS B 199 SER B 208 -1 N ILE B 206 O LEU B 221 SHEET 6 AA212 LYS B 149 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA212 VAL B 176 THR B 186 -1 O HIS B 181 N PHE B 165 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N GLU B 95 O GLN B 184 SHEET 10 AA212 THR B 105 GLU B 115 -1 O ALA B 110 N GLN B 94 SHEET 11 AA212 THR B 118 ILE B 128 -1 O HIS B 124 N ARG B 109 SHEET 12 AA212 VAL B 11 VAL B 22 1 N GLU B 17 O ASN B 121 SSBOND 1 CYS A 126 CYS B 126 1555 1555 2.10 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.33 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.32 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.30 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 4.82 CISPEP 2 MET B 88 PRO B 89 0 11.77 SITE 1 AC1 4 LYS A 52 PRO A 56 TRP A 57 HIS A 139 SITE 1 AC2 4 ARG B 73 PRO B 75 ASP B 76 HIS B 77 SITE 1 AC3 2 PHE A 28 HIS B 25 SITE 1 AC4 1 SER A 43 SITE 1 AC5 3 PRO B 56 TRP B 57 HIS B 139 SITE 1 AC6 4 ASN A 23 GLY A 24 ASP B 19 HIS B 124 SITE 1 AC7 3 ARG B 109 GLU B 111 HIS B 124 SITE 1 AC8 2 MET B 78 ALA B 227 SITE 1 AC9 12 PRO B 58 THR B 59 LEU B 60 VAL B 61 SITE 2 AC9 12 THR B 62 ILE B 98 PHE B 100 PHE B 145 SITE 3 AC9 12 ILE B 167 HIS B 169 ALA B 179 HIS B 181 CRYST1 91.510 91.510 205.110 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004875 0.00000