HEADER CELL ADHESION 21-AUG-14 4W6W TITLE CO-COMPLEX STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF TITLE 2 WITH INHIBITORY NANOBODY NBFEDF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F18 FIMBRIAL ADHESIN AC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 35-185; COMPND 5 SYNONYM: FEDF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NBFEDF6; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FEDF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 12 ORGANISM_COMMON: LLAMA; SOURCE 13 ORGANISM_TAXID: 9844; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PDESTR4-R3 KEYWDS CELL ADHESION, ADHESIN, INHIBITOR, FIMBRIAE EXPDTA X-RAY DIFFRACTION AUTHOR K.MOONENS,M.DE KERPEL,C.ANNELIES,E.COX,E.PARDON,H.REMAUT,H.DE GREVE REVDAT 4 10-JAN-24 4W6W 1 REMARK REVDAT 3 07-FEB-18 4W6W 1 SOURCE REVDAT 2 24-DEC-14 4W6W 1 JRNL REVDAT 1 17-DEC-14 4W6W 0 JRNL AUTH K.MOONENS,M.DE KERPEL,A.CODDENS,E.COX,E.PARDON,H.REMAUT, JRNL AUTH 2 H.DE GREVE JRNL TITL NANOBODY MEDIATED INHIBITION OF ATTACHMENT OF F18 FIMBRIAE JRNL TITL 2 EXPRESSING ESCHERICHIA COLI. JRNL REF PLOS ONE V. 9 14691 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25502211 JRNL DOI 10.1371/JOURNAL.PONE.0114691 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.354 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.264 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2047 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1863 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2774 ; 1.869 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4288 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 7.787 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;40.227 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;16.684 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.002 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2374 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 494 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 0.983 ; 1.485 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1056 ; 0.983 ; 1.484 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1316 ; 1.689 ; 2.219 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1317 ; 1.688 ; 2.220 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 990 ; 1.162 ; 1.587 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 990 ; 1.161 ; 1.587 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1459 ; 1.910 ; 2.331 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2153 ; 3.955 ;11.753 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2146 ; 3.934 ;11.702 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8711 -30.4229 -15.6800 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1627 REMARK 3 T33: 0.0155 T12: -0.0016 REMARK 3 T13: -0.0062 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.3703 L22: 3.9464 REMARK 3 L33: 2.4955 L12: 0.9044 REMARK 3 L13: -0.2000 L23: -0.8234 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: -0.0242 S13: 0.1620 REMARK 3 S21: 0.0277 S22: 0.0813 S23: 0.1082 REMARK 3 S31: -0.1688 S32: -0.2233 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 802 B 925 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5081 -13.5090 -22.8411 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.1402 REMARK 3 T33: 0.0477 T12: 0.0074 REMARK 3 T13: -0.0020 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.8803 L22: 4.2612 REMARK 3 L33: 2.4209 L12: 0.9583 REMARK 3 L13: 0.2039 L23: 2.6588 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0003 S13: 0.0570 REMARK 3 S21: -0.0676 S22: -0.0542 S23: 0.0018 REMARK 3 S31: -0.1618 S32: -0.0213 S33: 0.0801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4W6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 87.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 1.02900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 160 MM NACL, 80 MM BIS-TRIS PH 5.5, REMARK 280 20% PEG-3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.84533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.92267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.92267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.84533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 SER A 19 REMARK 465 SER A 138 REMARK 465 ALA A 162 REMARK 465 ILE A 163 REMARK 465 ALA A 164 REMARK 465 LYS A 165 REMARK 465 GLN B 801 REMARK 465 HIS B 926 REMARK 465 HIS B 927 REMARK 465 HIS B 928 REMARK 465 HIS B 929 REMARK 465 HIS B 930 REMARK 465 HIS B 931 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 889 O HOH B 1008 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 906 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 111 70.87 164.44 REMARK 500 ASN A 149 -156.47 -137.20 REMARK 500 TYR B 827 114.03 162.69 REMARK 500 PHE B 900 69.31 63.55 REMARK 500 GLN B 909 -42.11 -27.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 111 GLY A 112 33.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B4P RELATED DB: PDB REMARK 900 4B4P CONTAINS THE APO FEDF LECTIN DOMAIN REMARK 900 RELATED ID: 4W6X RELATED DB: PDB REMARK 900 RELATED ID: 4W6Y RELATED DB: PDB DBREF 4W6W A 15 165 UNP Q47212 Q47212_ECOLX 35 185 DBREF 4W6W B 801 931 PDB 4W6W 4W6W 801 931 SEQRES 1 A 151 ASN SER SER ALA SER SER ALA GLN VAL THR GLY THR LEU SEQRES 2 A 151 LEU GLY THR GLY LYS THR ASN THR THR GLN MET PRO ALA SEQRES 3 A 151 LEU TYR THR TRP GLN HIS GLN ILE TYR ASN VAL ASN PHE SEQRES 4 A 151 ILE PRO SER SER SER GLY THR LEU THR CYS GLN ALA GLY SEQRES 5 A 151 THR ILE LEU VAL TRP LYS ASN GLY ARG GLU THR GLN TYR SEQRES 6 A 151 ALA LEU GLU CYS ARG VAL SER ILE HIS HIS SER SER GLY SEQRES 7 A 151 SER ILE ASN GLU SER GLN TRP GLY GLN GLN SER GLN VAL SEQRES 8 A 151 GLY PHE GLY THR ALA CYS GLY ASN LYS LYS CYS ARG PHE SEQRES 9 A 151 THR GLY PHE GLU ILE SER LEU ARG ILE PRO PRO ASN ALA SEQRES 10 A 151 GLN THR TYR PRO LEU SER SER GLY ASP LEU LYS GLY SER SEQRES 11 A 151 PHE SER LEU THR ASN LYS GLU VAL ASN TRP SER ALA SER SEQRES 12 A 151 ILE TYR VAL PRO ALA ILE ALA LYS SEQRES 1 B 131 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 B 131 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 131 TYR THR SER GLY ARG ASP SER MET GLY TRP PHE ARG GLN SEQRES 4 B 131 ALA PRO GLY LYS GLU ARG GLU GLY VAL ALA CYS ILE ASP SEQRES 5 B 131 THR SER GLY ILE VAL ASN TYR ALA ASP SER VAL LYS GLY SEQRES 6 B 131 ARG PHE THR ILE SER GLN ASP SER ALA LYS LYS THR LEU SEQRES 7 B 131 TYR LEU GLU MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 131 LEU TYR SER CYS ALA THR GLY PRO PHE VAL TYR GLY ARG SEQRES 9 B 131 GLY CYS LEU GLY GLN ALA PHE TYR SER TYR TRP GLY GLN SEQRES 10 B 131 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 11 B 131 HIS FORMUL 3 HOH *57(H2 O) HELIX 1 AA1 GLY A 25 GLY A 29 5 5 HELIX 2 AA2 PRO A 128 THR A 133 1 6 HELIX 3 AA3 LYS B 886 THR B 890 5 5 HELIX 4 AA4 TYR B 902 TYR B 912 5 11 SHEET 1 AA1 5 GLN A 22 THR A 24 0 SHEET 2 AA1 5 ASN A 153 VAL A 160 -1 O TYR A 159 N GLN A 22 SHEET 3 AA1 5 LEU A 141 THR A 148 -1 N LEU A 141 O VAL A 160 SHEET 4 AA1 5 GLY A 59 ALA A 65 -1 N THR A 62 O SER A 146 SHEET 5 AA1 5 GLN A 102 PHE A 107 -1 O VAL A 105 N LEU A 61 SHEET 1 AA2 5 GLY A 31 ALA A 40 0 SHEET 2 AA2 5 THR A 43 PHE A 53 -1 O GLN A 45 N GLN A 37 SHEET 3 AA2 5 PHE A 118 ARG A 126 -1 O PHE A 121 N ILE A 48 SHEET 4 AA2 5 GLU A 82 HIS A 89 -1 N HIS A 88 O GLY A 120 SHEET 5 AA2 5 ILE A 94 GLU A 96 -1 O ASN A 95 N ILE A 87 SHEET 1 AA3 6 THR A 67 TRP A 71 0 SHEET 2 AA3 6 GLU A 76 ALA A 80 -1 O TYR A 79 N ILE A 68 SHEET 3 AA3 6 PHE B 867 ASP B 872 -1 O GLN B 871 N GLN A 78 SHEET 4 AA3 6 LEU B 878 MET B 882 -1 O GLU B 881 N THR B 868 SHEET 5 AA3 6 LEU B 818 ALA B 824 -1 N LEU B 818 O MET B 882 SHEET 6 AA3 6 LEU B 804 SER B 807 -1 N SER B 807 O SER B 821 SHEET 1 AA4 6 GLY B 810 GLN B 813 0 SHEET 2 AA4 6 THR B 919 SER B 924 1 O THR B 922 N GLY B 810 SHEET 3 AA4 6 ALA B 891 PRO B 899 -1 N TYR B 893 O THR B 919 SHEET 4 AA4 6 ASP B 832 GLN B 839 -1 N SER B 833 O GLY B 898 SHEET 5 AA4 6 GLU B 846 ILE B 851 -1 O ILE B 851 N MET B 834 SHEET 6 AA4 6 VAL B 857 TYR B 859 -1 O ASN B 858 N CYS B 850 SHEET 1 AA5 4 GLY B 810 GLN B 813 0 SHEET 2 AA5 4 THR B 919 SER B 924 1 O THR B 922 N GLY B 810 SHEET 3 AA5 4 ALA B 891 PRO B 899 -1 N TYR B 893 O THR B 919 SHEET 4 AA5 4 TYR B 914 TRP B 915 -1 O TYR B 914 N THR B 897 SSBOND 1 CYS A 63 CYS A 83 1555 1555 2.08 SSBOND 2 CYS A 111 CYS A 116 1555 1555 1.93 SSBOND 3 CYS B 822 CYS B 895 1555 1555 2.01 SSBOND 4 CYS B 850 CYS B 906 1555 1555 2.02 CRYST1 101.361 101.361 62.768 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009866 0.005696 0.000000 0.00000 SCALE2 0.000000 0.011392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015932 0.00000