HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 27-AUG-14 4W9S TITLE 2-(4-(1H-TETRAZOL-5-YL)PHENYL)-5-HYDROXYPYRIMIDIN-4(3H)-ONE BOUND TO TITLE 2 INFLUENZA 2009 H1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 387207; SOURCE 4 STRAIN: A/DUCK/HOKKAIDO/8/1980 H3N8; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN, RNA BINDING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX, TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 3 27-SEP-23 4W9S 1 SOURCE KEYWDS JRNL REMARK REVDAT 3 2 1 LINK REVDAT 2 22-OCT-14 4W9S 1 JRNL REVDAT 1 01-OCT-14 4W9S 0 JRNL AUTH H.Y.SAGONG,J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD,E.J.LAVOIE JRNL TITL PHENYL SUBSTITUTED 4-HYDROXYPYRIDAZIN-3(2H)-ONES AND JRNL TITL 2 5-HYDROXYPYRIMIDIN-4(3H)-ONES: INHIBITORS OF INFLUENZA A JRNL TITL 3 ENDONUCLEASE. JRNL REF J.MED.CHEM. V. 57 8086 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25225968 JRNL DOI 10.1021/JM500958X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.9157 - 3.8720 0.95 2680 139 0.1540 0.1799 REMARK 3 2 3.8720 - 3.0757 1.00 2668 153 0.1598 0.2150 REMARK 3 3 3.0757 - 2.6876 1.00 2655 139 0.1770 0.1727 REMARK 3 4 2.6876 - 2.4422 1.00 2659 152 0.1741 0.2056 REMARK 3 5 2.4422 - 2.2673 1.00 2660 130 0.1864 0.2414 REMARK 3 6 2.2673 - 2.1337 1.00 2634 138 0.1731 0.2337 REMARK 3 7 2.1337 - 2.0269 1.00 2620 146 0.2013 0.2047 REMARK 3 8 2.0269 - 1.9388 1.00 2603 154 0.2273 0.2840 REMARK 3 9 1.9388 - 1.8642 1.00 2607 143 0.2708 0.3335 REMARK 3 10 1.8642 - 1.7999 0.98 2626 101 0.3039 0.3303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1710 REMARK 3 ANGLE : 1.280 2301 REMARK 3 CHIRALITY : 0.053 241 REMARK 3 PLANARITY : 0.007 295 REMARK 3 DIHEDRAL : 15.134 641 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -4:31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.450 18.635 -18.593 REMARK 3 T TENSOR REMARK 3 T11: 0.4776 T22: 0.4960 REMARK 3 T33: 0.2886 T12: -0.1473 REMARK 3 T13: 0.0224 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 4.6319 L22: 3.9180 REMARK 3 L33: 3.6361 L12: 1.8488 REMARK 3 L13: -0.6925 L23: -1.7908 REMARK 3 S TENSOR REMARK 3 S11: -0.4208 S12: 0.8143 S13: -0.1974 REMARK 3 S21: -0.3758 S22: 0.2633 S23: -0.0885 REMARK 3 S31: 0.1730 S32: 0.2729 S33: 0.0817 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 32:62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.426 12.714 -0.832 REMARK 3 T TENSOR REMARK 3 T11: 0.3147 T22: 0.2586 REMARK 3 T33: 0.2985 T12: -0.0610 REMARK 3 T13: -0.0098 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 4.2402 L22: 7.5416 REMARK 3 L33: 7.3079 L12: 2.3893 REMARK 3 L13: -0.6637 L23: -4.9760 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.3525 S13: -0.5122 REMARK 3 S21: 0.2922 S22: -0.1635 S23: -0.3576 REMARK 3 S31: 0.0829 S32: 0.1389 S33: 0.3597 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 63:126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.007 11.042 -2.324 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.2822 REMARK 3 T33: 0.2976 T12: -0.1106 REMARK 3 T13: -0.0061 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.6600 L22: 2.1300 REMARK 3 L33: 4.4381 L12: 0.3428 REMARK 3 L13: 0.4045 L23: -0.8680 REMARK 3 S TENSOR REMARK 3 S11: 0.1946 S12: -0.2973 S13: -0.1161 REMARK 3 S21: 0.2436 S22: -0.3039 S23: 0.1056 REMARK 3 S31: 0.3938 S32: -0.5294 S33: 0.0474 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 127:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.999 26.440 -1.207 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.4918 REMARK 3 T33: 0.6060 T12: 0.0684 REMARK 3 T13: -0.0234 T23: -0.0706 REMARK 3 L TENSOR REMARK 3 L11: 4.8221 L22: 8.3593 REMARK 3 L33: 2.9198 L12: 0.7678 REMARK 3 L13: -0.6741 L23: -3.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.1665 S12: 0.3038 S13: 1.3906 REMARK 3 S21: -0.0227 S22: 0.0080 S23: 1.1422 REMARK 3 S31: -0.8044 S32: -0.7375 S33: -0.2390 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 150:195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.725 26.033 -2.350 REMARK 3 T TENSOR REMARK 3 T11: 0.4750 T22: 0.3245 REMARK 3 T33: 0.3730 T12: -0.1572 REMARK 3 T13: -0.0565 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 4.6134 L22: 1.6751 REMARK 3 L33: 4.3795 L12: 1.8880 REMARK 3 L13: -1.7580 L23: 0.0083 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.1976 S13: 0.5686 REMARK 3 S21: -0.1298 S22: -0.1592 S23: 0.1952 REMARK 3 S31: -0.7379 S32: 0.5008 S33: -0.0790 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27807 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 22.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4M5Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS ARE FORMED BY MIXING IN A 1:1 REMARK 280 RATIO ENDONUCLEASE (5 MG/ML) WITH CRYSTALLIZATION BUFFER REMARK 280 CONTAINING 200 MM MES, 27% PEG8000, 200 MM AMMONIUM SULFATE, 1 REMARK 280 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM TAURINE, REMARK 280 AND 50 MM SODIUM FLUORIDE. CRYSTALS FORM WITHIN A FEW HOURS AND REMARK 280 GROW TO MAXIMUM SIZE IN ONE TO TWO WEEKS, PH 6.7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.25600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.25600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.99300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.81850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.99300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.81850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.25600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.99300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.81850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.25600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.99300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.81850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ARG A -27 REMARK 465 ALA A -26 REMARK 465 TRP A -25 REMARK 465 ARG A -24 REMARK 465 HIS A -23 REMARK 465 PRO A -22 REMARK 465 GLN A -21 REMARK 465 PHE A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 ALA A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 LEU A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP A 55 REMARK 475 GLU A 56 REMARK 475 ARG A 57 REMARK 475 GLY A 58 REMARK 475 GLY A 66 REMARK 475 ASP A 67 REMARK 475 PRO A 68 REMARK 475 ASN A 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MN MN A 301 H011 3K1 A 304 1.31 REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.11 REMARK 500 O HOH A 519 O HOH A 547 2.12 REMARK 500 O HOH A 513 O HOH A 515 2.16 REMARK 500 O HOH A 515 O HOH A 516 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 19.52 52.71 REMARK 500 THR A 162 -56.20 66.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 94.9 REMARK 620 3 GLU A 119 OE2 173.3 88.3 REMARK 620 4 ILE A 120 O 85.6 91.4 88.5 REMARK 620 5 3K1 A 304 O01 88.7 99.6 96.6 168.0 REMARK 620 6 3K1 A 304 O19 86.7 175.9 90.5 92.4 76.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 88.0 REMARK 620 3 3K1 A 304 O01 96.3 88.6 REMARK 620 4 HOH A 471 O 84.5 89.0 177.5 REMARK 620 5 HOH A 472 O 89.9 175.3 95.8 86.7 REMARK 620 6 HOH A 505 O 174.9 90.5 88.6 90.6 91.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3K1 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M5U RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB REMARK 900 RELATED ID: 4LN7 RELATED DB: PDB REMARK 900 RELATED ID: 4M4Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB DBREF 4W9S A 1 204 UNP P13166 PA_I80A6 1 204 SEQADV 4W9S MET A -36 UNP P13166 INITIATING METHIONINE SEQADV 4W9S ALA A -35 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -34 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -33 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -32 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -31 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -30 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -29 UNP P13166 EXPRESSION TAG SEQADV 4W9S SER A -28 UNP P13166 EXPRESSION TAG SEQADV 4W9S ARG A -27 UNP P13166 EXPRESSION TAG SEQADV 4W9S ALA A -26 UNP P13166 EXPRESSION TAG SEQADV 4W9S TRP A -25 UNP P13166 EXPRESSION TAG SEQADV 4W9S ARG A -24 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -23 UNP P13166 EXPRESSION TAG SEQADV 4W9S PRO A -22 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLN A -21 UNP P13166 EXPRESSION TAG SEQADV 4W9S PHE A -20 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLY A -19 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLY A -18 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -17 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -16 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -15 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -14 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -13 UNP P13166 EXPRESSION TAG SEQADV 4W9S HIS A -12 UNP P13166 EXPRESSION TAG SEQADV 4W9S ALA A -11 UNP P13166 EXPRESSION TAG SEQADV 4W9S LEU A -10 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLU A -9 UNP P13166 EXPRESSION TAG SEQADV 4W9S VAL A -8 UNP P13166 EXPRESSION TAG SEQADV 4W9S LEU A -7 UNP P13166 EXPRESSION TAG SEQADV 4W9S PHE A -6 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLN A -5 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLY A -4 UNP P13166 EXPRESSION TAG SEQADV 4W9S PRO A -3 UNP P13166 EXPRESSION TAG SEQADV 4W9S LEU A -2 UNP P13166 EXPRESSION TAG SEQADV 4W9S GLY A -1 UNP P13166 EXPRESSION TAG SEQADV 4W9S SER A 0 UNP P13166 EXPRESSION TAG SEQADV 4W9S ILE A 85 UNP P13166 THR 85 CONFLICT SEQADV 4W9S SER A 186 UNP P13166 GLY 186 CONFLICT SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS SER ARG ALA TRP ARG SEQRES 2 A 241 HIS PRO GLN PHE GLY GLY HIS HIS HIS HIS HIS HIS ALA SEQRES 3 A 241 LEU GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLU SEQRES 4 A 241 ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE VAL GLU SEQRES 5 A 241 LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU ASP PRO SEQRES 6 A 241 LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS THR HIS SEQRES 7 A 241 LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS PHE ILE SEQRES 8 A 241 ASP GLU ARG GLY GLU SER ILE ILE VAL GLU SER GLY ASP SEQRES 9 A 241 PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE ILE GLU SEQRES 10 A 241 GLY ARG ASP ARG ILE MET ALA TRP THR VAL VAL ASN SER SEQRES 11 A 241 ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS PHE LEU SEQRES 12 A 241 PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE ILE GLU SEQRES 13 A 241 ILE GLY VAL THR ARG ARG GLU VAL HIS ILE TYR TYR LEU SEQRES 14 A 241 GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR HIS ILE SEQRES 15 A 241 HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA THR LYS SEQRES 16 A 241 ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA ARG ILE SEQRES 17 A 241 LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET ALA SER SEQRES 18 A 241 ARG SER LEU TRP ASP SER PHE ARG GLN SER GLU ARG GLY SEQRES 19 A 241 GLU GLU THR VAL GLU GLU ARG HET MN A 301 1 HET MN A 302 1 HET SO4 A 303 5 HET 3K1 A 304 26 HET SO4 A 305 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM 3K1 5-HYDROXY-2-[4-(1H-TETRAZOL-5-YL)PHENYL]PYRIMIDIN- HETNAM 2 3K1 4(3H)-ONE FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 3K1 C11 H8 N6 O2 FORMUL 7 HOH *153(H2 O) HELIX 1 AA1 SER A 0 PHE A 9 1 10 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 SER A 194 1 8 SHEET 1 AA1 3 SER A 60 ILE A 62 0 SHEET 2 AA1 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 AA1 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 AA2 5 PHE A 76 ILE A 78 0 SHEET 2 AA2 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA2 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA2 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA2 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.28 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.16 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.21 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.17 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.21 LINK O ILE A 120 MN MN A 301 1555 1555 2.09 LINK MN MN A 301 O01 3K1 A 304 1555 1555 2.16 LINK MN MN A 301 O19 3K1 A 304 1555 1555 2.24 LINK MN MN A 302 O01 3K1 A 304 1555 1555 2.05 LINK MN MN A 302 O HOH A 471 1555 1555 2.19 LINK MN MN A 302 O HOH A 472 1555 1555 2.14 LINK MN MN A 302 O HOH A 505 1555 1555 2.21 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 3K1 A 304 SITE 1 AC2 6 GLU A 80 ASP A 108 3K1 A 304 HOH A 471 SITE 2 AC2 6 HOH A 472 HOH A 505 SITE 1 AC3 7 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC3 7 GLU A 166 HOH A 425 HOH A 462 SITE 1 AC4 15 LYS A 34 ALA A 37 HIS A 41 GLU A 80 SITE 2 AC4 15 ASP A 108 GLU A 119 ILE A 120 ARG A 124 SITE 3 AC4 15 LYS A 134 MN A 301 MN A 302 HOH A 453 SITE 4 AC4 15 HOH A 500 HOH A 505 HOH A 506 SITE 1 AC5 4 GLN A 7 CYS A 8 PHE A 9 ASN A 10 CRYST1 87.986 101.637 66.512 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015035 0.00000