HEADER TRANSFERASE 28-AUG-14 4W9W TITLE CRYSTAL STRUCTURE OF BMP-2-INDUCIBLE KINASE IN COMPLEX WITH SMALL TITLE 2 MOLECULE AZD-7762 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BMP-2-INDUCIBLE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 39-344; COMPND 5 SYNONYM: BIKE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: SURFACE ENTROPY MUTANT OF BMP2K KINASE DOMAIN (K320A, COMPND 10 K321A) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP2K, BIKE, HRIHFB2017; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-ZB KEYWDS KINASE, SMALL-MOLECULE, CATALYTIC DOMAIN, PROTEIN BINDING, INHIBITOR, KEYWDS 2 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.J.SORRELL,J.M.ELKINS,T.KROJER,P.SAVITSKY,E.WILLIAMS,F.VON DELFT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 5 08-MAY-24 4W9W 1 REMARK REVDAT 4 24-JAN-18 4W9W 1 AUTHOR REVDAT 3 09-MAR-16 4W9W 1 JRNL REVDAT 2 02-MAR-16 4W9W 1 JRNL REVDAT 1 10-SEP-14 4W9W 0 JRNL AUTH F.J.SORRELL,M.SZKLARZ,K.R.ABDUL AZEEZ,J.M.ELKINS,S.KNAPP JRNL TITL FAMILY-WIDE STRUCTURAL ANALYSIS OF HUMAN NUMB-ASSOCIATED JRNL TITL 2 PROTEIN KINASES. JRNL REF STRUCTURE V. 24 401 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 26853940 JRNL DOI 10.1016/J.STR.2015.12.015 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1682) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 39:79) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3490 -9.4120 -43.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.3498 T22: 0.2220 REMARK 3 T33: 0.4862 T12: -0.0490 REMARK 3 T13: 0.0799 T23: -0.0315 REMARK 3 L TENSOR REMARK 3 L11: 4.3053 L22: 4.4886 REMARK 3 L33: 2.3142 L12: 0.5913 REMARK 3 L13: 1.1461 L23: 0.7312 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: 0.2049 S13: 0.6355 REMARK 3 S21: -0.1166 S22: 0.1022 S23: -0.5715 REMARK 3 S31: -0.4979 S32: 0.3668 S33: -0.0868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 80:148) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9488 -16.9588 -51.7401 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.3042 REMARK 3 T33: 0.3209 T12: 0.0798 REMARK 3 T13: 0.0527 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 2.3925 L22: 3.3628 REMARK 3 L33: 1.9277 L12: -0.6612 REMARK 3 L13: 0.0062 L23: 1.2317 REMARK 3 S TENSOR REMARK 3 S11: 0.3212 S12: 0.6051 S13: 0.2783 REMARK 3 S21: -0.4133 S22: -0.2450 S23: -0.2184 REMARK 3 S31: -0.5124 S32: -0.0285 S33: -0.0120 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 149:274) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3245 -30.6753 -62.0754 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.2734 REMARK 3 T33: 0.1838 T12: 0.0821 REMARK 3 T13: -0.0414 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.1597 L22: 1.5008 REMARK 3 L33: 2.8245 L12: -0.1821 REMARK 3 L13: -0.2460 L23: 0.7202 REMARK 3 S TENSOR REMARK 3 S11: 0.0057 S12: 0.2659 S13: 0.0931 REMARK 3 S21: -0.2126 S22: -0.0681 S23: 0.0330 REMARK 3 S31: -0.6140 S32: -0.4119 S33: 0.0191 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 275:329) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9236 -44.3943 -59.9251 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.2274 REMARK 3 T33: 0.2217 T12: -0.0070 REMARK 3 T13: -0.0133 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.4310 L22: 1.9152 REMARK 3 L33: 3.1389 L12: -0.3701 REMARK 3 L13: -0.0391 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.3439 S13: -0.3361 REMARK 3 S21: -0.0424 S22: -0.0958 S23: 0.0422 REMARK 3 S31: 0.1438 S32: -0.2622 S33: 0.0441 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 330:344) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7698 -58.8077 -64.2949 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.3524 REMARK 3 T33: 0.4188 T12: -0.0416 REMARK 3 T13: -0.0460 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4325 L22: 3.1106 REMARK 3 L33: 2.0179 L12: 0.2115 REMARK 3 L13: -0.4110 L23: 0.2945 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.1566 S13: 0.1583 REMARK 3 S21: -0.3996 S22: -0.1954 S23: 1.0182 REMARK 3 S31: -0.0457 S32: -0.4313 S33: 0.2848 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4W9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000203439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41784 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 33.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, FRESHLY PURIFIED REMARK 280 PROTEIN, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.52450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.52450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.36500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.52450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.11000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.36500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.52450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 41 CG1 CG2 REMARK 470 GLU A 55 CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 PHE A 62 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 75 NE CZ NH1 NH2 REMARK 470 LYS A 93 CE NZ REMARK 470 GLU A 101 CD OE1 OE2 REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 SER A 120 OG REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 ASN A 122 CG OD1 ND2 REMARK 470 VAL A 123 CG1 CG2 REMARK 470 ARG A 134 CD NE CZ NH1 NH2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 LYS A 211 CD CE NZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 LYS A 223 CE NZ REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 MET A 341 CE REMARK 470 SER A 344 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 518 O HOH A 572 1.85 REMARK 500 O HOH A 671 O HOH A 692 1.87 REMARK 500 O HOH A 626 O HOH A 693 1.89 REMARK 500 O HOH A 536 O HOH A 556 1.93 REMARK 500 O HOH A 669 O HOH A 704 1.95 REMARK 500 O HOH A 637 O HOH A 688 1.98 REMARK 500 O HOH A 520 O HOH A 539 1.99 REMARK 500 OE1 GLN A 50 O HOH A 501 2.01 REMARK 500 O HOH A 673 O HOH A 698 2.02 REMARK 500 O HOH A 671 O HOH A 714 2.04 REMARK 500 O HOH A 702 O HOH A 719 2.06 REMARK 500 O LYS A 222 O HOH A 707 2.10 REMARK 500 NH1 ARG A 69 O GLY A 73 2.12 REMARK 500 OE1 GLU A 54 O HOH A 502 2.12 REMARK 500 O SER A 103 O HOH A 577 2.14 REMARK 500 O CYS A 172 O HOH A 503 2.16 REMARK 500 O HOH A 684 O HOH A 728 2.16 REMARK 500 O ILE A 108 O HOH A 577 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 556 O HOH A 567 8544 1.49 REMARK 500 O HOH A 510 O HOH A 528 2545 2.13 REMARK 500 NH2 ARG A 69 OG SER A 326 8544 2.15 REMARK 500 O HOH A 557 O HOH A 565 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 179 -3.24 72.53 REMARK 500 ASP A 198 80.30 58.90 REMARK 500 THR A 244 -168.15 -123.09 REMARK 500 ASN A 330 55.22 39.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDJ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YDJ A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 DBREF 4W9W A 39 344 UNP Q9NSY1 BMP2K_HUMAN 39 344 SEQADV 4W9W ALA A 320 UNP Q9NSY1 LYS 320 ENGINEERED MUTATION SEQADV 4W9W ALA A 321 UNP Q9NSY1 LYS 321 ENGINEERED MUTATION SEQRES 1 A 306 VAL GLY VAL ARG VAL PHE ALA VAL GLY ARG HIS GLN VAL SEQRES 2 A 306 THR LEU GLU GLU SER LEU ALA GLU GLY GLY PHE SER THR SEQRES 3 A 306 VAL PHE LEU VAL ARG THR HIS GLY GLY ILE ARG CYS ALA SEQRES 4 A 306 LEU LYS ARG MET TYR VAL ASN ASN MET PRO ASP LEU ASN SEQRES 5 A 306 VAL CYS LYS ARG GLU ILE THR ILE MET LYS GLU LEU SER SEQRES 6 A 306 GLY HIS LYS ASN ILE VAL GLY TYR LEU ASP CYS ALA VAL SEQRES 7 A 306 ASN SER ILE SER ASP ASN VAL TRP GLU VAL LEU ILE LEU SEQRES 8 A 306 MET GLU TYR CYS ARG ALA GLY GLN VAL VAL ASN GLN MET SEQRES 9 A 306 ASN LYS LYS LEU GLN THR GLY PHE THR GLU PRO GLU VAL SEQRES 10 A 306 LEU GLN ILE PHE CYS ASP THR CYS GLU ALA VAL ALA ARG SEQRES 11 A 306 LEU HIS GLN CYS LYS THR PRO ILE ILE HIS ARG ASP LEU SEQRES 12 A 306 LYS VAL GLU ASN ILE LEU LEU ASN ASP GLY GLY ASN TYR SEQRES 13 A 306 VAL LEU CYS ASP PHE GLY SER ALA THR ASN LYS PHE LEU SEQRES 14 A 306 ASN PRO GLN LYS ASP GLY VAL ASN VAL VAL GLU GLU GLU SEQRES 15 A 306 ILE LYS LYS TYR THR THR LEU SER TYR ARG ALA PRO GLU SEQRES 16 A 306 MET ILE ASN LEU TYR GLY GLY LYS PRO ILE THR THR LYS SEQRES 17 A 306 ALA ASP ILE TRP ALA LEU GLY CYS LEU LEU TYR LYS LEU SEQRES 18 A 306 CYS PHE PHE THR LEU PRO PHE GLY GLU SER GLN VAL ALA SEQRES 19 A 306 ILE CYS ASP GLY ASN PHE THR ILE PRO ASP ASN SER ARG SEQRES 20 A 306 TYR SER ARG ASN ILE HIS CYS LEU ILE ARG PHE MET LEU SEQRES 21 A 306 GLU PRO ASP PRO GLU HIS ARG PRO ASP ILE PHE GLN VAL SEQRES 22 A 306 SER TYR PHE ALA PHE LYS PHE ALA ALA ALA ASP CYS PRO SEQRES 23 A 306 VAL SER ASN ILE ASN ASN SER SER ILE PRO SER ALA LEU SEQRES 24 A 306 PRO GLU PRO MET THR ALA SER HET YDJ A 401 25 HET YDJ A 402 25 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HETNAM YDJ 5-(3-FLUOROPHENYL)-N-[(3S)-3-PIPERIDYL]-3-UREIDO- HETNAM 2 YDJ THIOPHENE-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 YDJ 2(C17 H19 F N4 O2 S) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *232(H2 O) HELIX 1 AA1 ASN A 85 SER A 103 1 19 HELIX 2 AA2 GLN A 137 LYS A 145 1 9 HELIX 3 AA3 THR A 151 GLN A 171 1 21 HELIX 4 AA4 LYS A 182 GLU A 184 5 3 HELIX 5 AA5 ASP A 198 ALA A 202 5 5 HELIX 6 AA6 ASN A 208 GLY A 213 1 6 HELIX 7 AA7 GLY A 213 THR A 225 1 13 HELIX 8 AA8 THR A 226 ARG A 230 5 5 HELIX 9 AA9 ALA A 231 ILE A 235 5 5 HELIX 10 AB1 THR A 244 PHE A 262 1 19 HELIX 11 AB2 SER A 269 GLY A 276 1 8 HELIX 12 AB3 SER A 287 LEU A 298 1 12 HELIX 13 AB4 ASP A 301 ARG A 305 5 5 HELIX 14 AB5 ASP A 307 ALA A 319 1 13 SHEET 1 AA1 6 VAL A 43 VAL A 46 0 SHEET 2 AA1 6 HIS A 49 GLU A 59 -1 O HIS A 49 N VAL A 46 SHEET 3 AA1 6 THR A 64 THR A 70 -1 O LEU A 67 N GLU A 55 SHEET 4 AA1 6 ARG A 75 VAL A 83 -1 O LEU A 78 N PHE A 66 SHEET 5 AA1 6 TRP A 124 GLU A 131 -1 O ILE A 128 N LYS A 79 SHEET 6 AA1 6 TYR A 111 SER A 118 -1 N ASN A 117 O GLU A 125 SHEET 1 AA2 2 ILE A 186 LEU A 188 0 SHEET 2 AA2 2 TYR A 194 LEU A 196 -1 O VAL A 195 N LEU A 187 CISPEP 1 GLY A 61 PHE A 62 0 -1.17 SITE 1 AC1 12 ALA A 77 MET A 130 GLU A 131 TYR A 132 SITE 2 AC1 12 CYS A 133 ARG A 134 GLY A 136 GLU A 184 SITE 3 AC1 12 ASN A 185 LEU A 187 HOH A 623 HOH A 704 SITE 1 AC2 8 ASN A 289 TYR A 313 LYS A 317 PHE A 318 SITE 2 AC2 8 PRO A 334 SER A 335 ALA A 336 HOH A 525 SITE 1 AC3 6 GLU A 95 MET A 130 CYS A 197 ASP A 198 SITE 2 AC3 6 PHE A 199 HOH A 669 SITE 1 AC4 5 ILE A 74 LYS A 145 GLY A 149 GLU A 154 SITE 2 AC4 5 HOH A 524 SITE 1 AC5 7 GLN A 157 CYS A 160 PHE A 316 ALA A 321 SITE 2 AC5 7 HOH A 509 HOH A 578 HOH A 670 SITE 1 AC6 3 HIS A 105 GLU A 164 ARG A 168 SITE 1 AC7 5 PHE A 278 ARG A 295 GLU A 339 PRO A 340 SITE 2 AC7 5 MET A 341 CRYST1 42.220 112.730 163.049 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006133 0.00000