HEADER TRANSFERASE 29-AUG-14 4WAD TITLE CRYSTAL STRUCTURE OF TARM WITH UDP-GLCNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL TRANSFERASE, GROUP 1 FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TARM; COMPND 5 EC: 2.4.1.5,2.4.1.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD-TOPO-102 KEYWDS GT-B FOLD, GT-4, RETAINING GLYCOSYLTRANSFERASE, DUF1975, ROSSMANN KEYWDS 2 FOLD, WTA-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.KOC,T.STEHLE,G.XIA,A.PESCHEL REVDAT 7 10-JAN-24 4WAD 1 REMARK REVDAT 6 06-SEP-17 4WAD 1 REMARK SITE ATOM REVDAT 5 22-APR-15 4WAD 1 JRNL REVDAT 4 08-APR-15 4WAD 1 REVDAT 3 11-MAR-15 4WAD 1 REVDAT 2 04-MAR-15 4WAD 1 JRNL REVDAT 1 25-FEB-15 4WAD 0 JRNL AUTH C.KOC,D.GERLACH,S.BECK,A.PESCHEL,G.XIA,T.STEHLE JRNL TITL STRUCTURAL AND ENZYMATIC ANALYSIS OF TARM JRNL TITL 2 GLYCOSYLTRANSFERASE FROM STAPHYLOCOCCUS AUREUS REVEALS AN JRNL TITL 3 OLIGOMERIC PROTEIN SPECIFIC FOR THE GLYCOSYLATION OF WALL JRNL TITL 4 TEICHOIC ACID. JRNL REF J.BIOL.CHEM. V. 290 9874 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25697358 JRNL DOI 10.1074/JBC.M114.619924 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 24898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1392 - 5.8218 0.98 2829 149 0.2655 0.3524 REMARK 3 2 5.8218 - 4.6221 1.00 2671 141 0.2579 0.2850 REMARK 3 3 4.6221 - 4.0382 1.00 2645 139 0.2227 0.2365 REMARK 3 4 4.0382 - 3.6691 0.99 2596 137 0.2339 0.2567 REMARK 3 5 3.6691 - 3.4062 1.00 2619 138 0.2333 0.2636 REMARK 3 6 3.4062 - 3.2054 1.00 2580 136 0.2513 0.2890 REMARK 3 7 3.2054 - 3.0449 1.00 2592 136 0.2732 0.3336 REMARK 3 8 3.0449 - 2.9124 1.00 2583 136 0.2920 0.3557 REMARK 3 9 2.9124 - 2.8003 0.98 2537 134 0.2990 0.3783 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4200 REMARK 3 ANGLE : 0.799 5642 REMARK 3 CHIRALITY : 0.032 614 REMARK 3 PLANARITY : 0.003 715 REMARK 3 DIHEDRAL : 14.195 1605 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.23400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.270 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4WAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM-CHLORIDE, PEG-8000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.51500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.51500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.51500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.51500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.51500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 108.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -62.01200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -107.40793 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 62.01200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -107.40793 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 249 O3' UD1 A 501 2.07 REMARK 500 OD1 ASN A 473 NZ LYS A 477 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 341 ND2 ASN A 372 11554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 44.44 76.22 REMARK 500 LYS A 15 -153.51 -120.34 REMARK 500 SER A 105 -147.64 -139.48 REMARK 500 SER A 126 -133.62 -76.70 REMARK 500 ASN A 138 18.77 59.76 REMARK 500 ASN A 238 32.01 -91.41 REMARK 500 ILE A 276 -168.54 -104.03 REMARK 500 VAL A 281 -157.97 -98.66 REMARK 500 GLN A 293 -45.44 -141.50 REMARK 500 ASN A 298 47.27 -146.53 REMARK 500 SER A 303 -165.23 -78.94 REMARK 500 HIS A 309 -158.38 -73.31 REMARK 500 HIS A 314 -152.71 -129.85 REMARK 500 PHE A 315 -137.04 -122.92 REMARK 500 LYS A 319 73.43 -54.91 REMARK 500 LEU A 336 -36.36 -134.35 REMARK 500 GLU A 338 33.13 -89.12 REMARK 500 GLU A 341 -36.24 -39.77 REMARK 500 ASP A 347 99.99 -162.64 REMARK 500 MET A 367 -36.10 -153.77 REMARK 500 ARG A 375 -45.59 -28.79 REMARK 500 LYS A 380 -74.02 -59.30 REMARK 500 THR A 385 77.97 -115.06 REMARK 500 GLN A 405 -120.35 -158.05 REMARK 500 LEU A 407 -70.67 8.50 REMARK 500 SER A 415 32.22 -79.84 REMARK 500 TYR A 426 101.42 63.81 REMARK 500 PRO A 428 37.07 -88.66 REMARK 500 LYS A 436 -45.25 -134.52 REMARK 500 ASN A 437 -6.13 -148.30 REMARK 500 ASN A 443 36.89 -71.13 REMARK 500 HIS A 444 -47.80 -142.18 REMARK 500 ASN A 445 80.68 -59.94 REMARK 500 ALA A 464 -47.00 -130.95 REMARK 500 SER A 479 -153.64 55.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UD1 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 DBREF 4WAD A 1 493 UNP Q2FI41 Q2FI41_STAA3 1 493 SEQADV 4WAD ILE A -4 UNP Q2FI41 EXPRESSION TAG SEQADV 4WAD ASP A -3 UNP Q2FI41 EXPRESSION TAG SEQADV 4WAD PRO A -2 UNP Q2FI41 EXPRESSION TAG SEQADV 4WAD PHE A -1 UNP Q2FI41 EXPRESSION TAG SEQADV 4WAD THR A 0 UNP Q2FI41 EXPRESSION TAG SEQRES 1 A 498 ILE ASP PRO PHE THR MET LYS LYS ILE PHE MET MET VAL SEQRES 2 A 498 HIS GLU LEU ASP VAL ASN LYS GLY GLY MET THR SER SER SEQRES 3 A 498 MET PHE ASN ARG SER LYS GLU PHE TYR ASP ALA ASP ILE SEQRES 4 A 498 PRO ALA ASP ILE VAL THR PHE ASP TYR LYS GLY ASN TYR SEQRES 5 A 498 ASP GLU ILE ILE LYS ALA LEU LYS LYS GLN GLY LYS MET SEQRES 6 A 498 ASP ARG ARG THR LYS MET TYR ASN VAL PHE GLU TYR PHE SEQRES 7 A 498 LYS GLN ILE SER ASN ASN LYS HIS PHE LYS SER ASN LYS SEQRES 8 A 498 LEU LEU TYR LYS HIS ILE SER GLU ARG LEU LYS ASN THR SEQRES 9 A 498 ILE GLU ILE GLU GLU SER LYS GLY ILE SER ARG TYR PHE SEQRES 10 A 498 ASP ILE THR THR GLY THR TYR ILE ALA TYR ILE ARG LYS SEQRES 11 A 498 SER LYS SER GLU LYS VAL ILE ASP PHE PHE LYS ASP ASN SEQRES 12 A 498 LYS ARG ILE GLU ARG PHE SER PHE ILE ASP ASN LYS VAL SEQRES 13 A 498 HIS MET LYS GLU THR PHE ASN VAL ASP ASN LYS VAL CYS SEQRES 14 A 498 TYR GLN VAL PHE TYR ASP GLU LYS GLY TYR PRO TYR ILE SEQRES 15 A 498 SER ARG ASN ILE ASN ALA ASN ASN GLY ALA VAL GLY LYS SEQRES 16 A 498 THR TYR VAL LEU VAL ASN LYS LYS GLU PHE LYS ASN ASN SEQRES 17 A 498 LEU ALA LEU CYS VAL TYR TYR LEU GLU LYS LEU ILE LYS SEQRES 18 A 498 ASP SER LYS ASP SER ILE MET ILE CYS ASP GLY PRO GLY SEQRES 19 A 498 SER PHE PRO LYS MET PHE ASN THR ASN HIS LYS ASN ALA SEQRES 20 A 498 GLN LYS TYR GLY VAL ILE HIS VAL ASN HIS HIS GLU ASN SEQRES 21 A 498 PHE ASP ASP THR GLY ALA PHE LYS LYS SER GLU LYS TYR SEQRES 22 A 498 ILE ILE GLU ASN ALA ASN LYS ILE ASN GLY VAL ILE VAL SEQRES 23 A 498 LEU THR GLU ALA GLN ARG LEU ASP ILE LEU ASN GLN PHE SEQRES 24 A 498 ASP VAL GLU ASN ILE PHE THR ILE SER ASN PHE VAL LYS SEQRES 25 A 498 ILE HIS ASN ALA PRO LYS HIS PHE GLN THR GLU LYS ILE SEQRES 26 A 498 VAL GLY HIS ILE SER ARG MET VAL PRO THR LYS ARG ILE SEQRES 27 A 498 ASP LEU LEU ILE GLU VAL ALA GLU LEU VAL VAL LYS LYS SEQRES 28 A 498 ASP ASN ALA VAL LYS PHE HIS ILE TYR GLY GLU GLY SER SEQRES 29 A 498 VAL LYS ASP LYS ILE ALA LYS MET ILE GLU ASP LYS ASN SEQRES 30 A 498 LEU GLU ARG ASN VAL PHE LEU LYS GLY TYR THR THR THR SEQRES 31 A 498 PRO GLN LYS CYS LEU GLU ASP PHE LYS LEU VAL VAL SER SEQRES 32 A 498 THR SER GLN TYR GLU GLY GLN GLY LEU SER MET ILE GLU SEQRES 33 A 498 ALA MET ILE SER LYS ARG PRO VAL VAL ALA PHE ASP ILE SEQRES 34 A 498 LYS TYR GLY PRO SER ASP PHE ILE GLU ASP ASN LYS ASN SEQRES 35 A 498 GLY TYR LEU ILE GLU ASN HIS ASN ILE ASN ASP MET ALA SEQRES 36 A 498 ASP LYS ILE LEU GLN LEU VAL ASN ASN ASP VAL LEU ALA SEQRES 37 A 498 ALA GLU PHE GLY SER LYS ALA ARG GLU ASN ILE ILE GLU SEQRES 38 A 498 LYS TYR SER THR GLU SER ILE LEU GLU LYS TRP LEU ASN SEQRES 39 A 498 LEU PHE ASN SER HET UD1 A 501 39 HET EDO A 502 4 HET EDO A 503 4 HET CL A 504 1 HET CL A 505 1 HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 UD1 C17 H27 N3 O17 P2 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *45(H2 O) HELIX 1 AA1 GLY A 17 ALA A 32 1 16 HELIX 2 AA2 ASN A 46 GLN A 57 1 12 HELIX 3 AA3 VAL A 69 ASN A 79 1 11 HELIX 4 AA4 ASN A 85 ARG A 95 1 11 HELIX 5 AA5 ASN A 202 ILE A 215 1 14 HELIX 6 AA6 SER A 230 ASN A 236 1 7 HELIX 7 AA7 LYS A 263 ASN A 272 1 10 HELIX 8 AA8 THR A 283 ASN A 292 1 10 HELIX 9 AA9 VAL A 328 ARG A 332 5 5 HELIX 10 AB1 ILE A 333 LYS A 345 1 13 HELIX 11 AB2 VAL A 360 LYS A 366 1 7 HELIX 12 AB3 THR A 385 GLU A 391 1 7 HELIX 13 AB4 GLY A 406 SER A 415 1 10 HELIX 14 AB5 ASN A 447 GLN A 455 1 9 HELIX 15 AB6 VAL A 461 TYR A 478 1 18 HELIX 16 AB7 THR A 480 ASN A 492 1 13 SHEET 1 AA1 7 MET A 66 ASN A 68 0 SHEET 2 AA1 7 ALA A 36 THR A 40 1 N ILE A 38 O TYR A 67 SHEET 3 AA1 7 LYS A 3 MET A 7 1 N MET A 6 O ASP A 37 SHEET 4 AA1 7 SER A 221 CYS A 225 1 O ILE A 224 N MET A 7 SHEET 5 AA1 7 GLN A 243 VAL A 247 1 O GLN A 243 N MET A 223 SHEET 6 AA1 7 VAL A 279 VAL A 281 1 O ILE A 280 N GLY A 246 SHEET 7 AA1 7 ILE A 299 THR A 301 1 O PHE A 300 N VAL A 281 SHEET 1 AA210 THR A 99 GLU A 103 0 SHEET 2 AA210 ILE A 108 ASP A 113 -1 O PHE A 112 N ILE A 100 SHEET 3 AA210 TYR A 119 LYS A 125 -1 O ILE A 123 N SER A 109 SHEET 4 AA210 GLU A 129 LYS A 136 -1 O ASP A 133 N TYR A 122 SHEET 5 AA210 LYS A 139 ILE A 147 -1 O PHE A 146 N LYS A 130 SHEET 6 AA210 LYS A 150 PHE A 157 -1 O MET A 153 N SER A 145 SHEET 7 AA210 VAL A 163 TYR A 169 -1 O TYR A 165 N THR A 156 SHEET 8 AA210 PRO A 175 ILE A 181 -1 O ILE A 177 N PHE A 168 SHEET 9 AA210 VAL A 188 VAL A 193 -1 O TYR A 192 N SER A 178 SHEET 10 AA210 LYS A 198 PHE A 200 -1 O LYS A 198 N VAL A 193 SHEET 1 AA3 4 VAL A 377 LEU A 379 0 SHEET 2 AA3 4 LYS A 351 TYR A 355 1 N ILE A 354 O PHE A 378 SHEET 3 AA3 4 ILE A 320 ILE A 324 1 N VAL A 321 O LYS A 351 SHEET 4 AA3 4 LEU A 395 VAL A 396 1 O LEU A 395 N GLY A 322 SHEET 1 AA4 2 VAL A 420 ASP A 423 0 SHEET 2 AA4 2 TYR A 439 GLU A 442 1 O ILE A 441 N ASP A 423 SITE 1 AC1 14 GLY A 16 GLY A 17 MET A 18 HIS A 249 SITE 2 AC1 14 VAL A 250 LEU A 282 ILE A 324 GLY A 356 SITE 3 AC1 14 THR A 383 TYR A 402 GLU A 403 GLY A 404 SITE 4 AC1 14 LEU A 407 SER A 408 SITE 1 AC2 2 ASP A 133 ASN A 161 SITE 1 AC3 2 HIS A 81 PRO A 175 SITE 1 AC4 2 TYR A 67 LYS A 172 SITE 1 AC5 2 PHE A 82 HOH A 628 CRYST1 124.024 124.024 217.030 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008063 0.004655 0.000000 0.00000 SCALE2 0.000000 0.009310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004608 0.00000