HEADER TRANSFERASE 02-SEP-14 4WB0 TITLE CRYSTAL STRUCTURE OF THE BROAD SPECIFICITY AMINOTRANSFERASE FROM TITLE 2 LEISHMANIA MEXICANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROAD SPECIFICITY AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BROAD SPECIFICITY AMINOTRANSFERASE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 3 ORGANISM_TAXID: 5665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: LEISHMANIA MEXICANA; SOURCE 8 ORGANISM_TAXID: 5665; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSAMINATION, BROAD SPECIFICITY, PYRIDOXAL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WEN,C.NOWICKI,W.BLANKENFELDT REVDAT 4 10-JAN-24 4WB0 1 REMARK REVDAT 3 25-APR-18 4WB0 1 REMARK REVDAT 2 25-NOV-15 4WB0 1 JRNL REVDAT 1 09-SEP-15 4WB0 0 JRNL AUTH J.WEN,C.NOWICKI,W.BLANKENFELDT JRNL TITL STRUCTURAL BASIS FOR THE RELAXED SUBSTRATE SELECTIVITY OF JRNL TITL 2 LEISHMANIA MEXICANA BROAD SPECIFICITY AMINOTRANSFERASE. JRNL REF MOL.BIOCHEM.PARASITOL. V. 202 34 2015 JRNL REFN ISSN 0166-6851 JRNL PMID 26456583 JRNL DOI 10.1016/J.MOLBIOPARA.2015.09.007 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 86399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.4424 - 5.9339 0.99 2931 176 0.1752 0.1970 REMARK 3 2 5.9339 - 4.7101 1.00 2851 149 0.1553 0.1768 REMARK 3 3 4.7101 - 4.1148 1.00 2784 156 0.1372 0.1682 REMARK 3 4 4.1148 - 3.7386 0.99 2778 153 0.1525 0.1963 REMARK 3 5 3.7386 - 3.4706 0.99 2744 158 0.1621 0.1754 REMARK 3 6 3.4706 - 3.2660 0.99 2779 139 0.1776 0.2283 REMARK 3 7 3.2660 - 3.1024 0.99 2743 153 0.1881 0.2391 REMARK 3 8 3.1024 - 2.9674 0.99 2749 139 0.1908 0.2286 REMARK 3 9 2.9674 - 2.8531 0.99 2719 163 0.1848 0.2131 REMARK 3 10 2.8531 - 2.7547 0.99 2759 133 0.1855 0.2021 REMARK 3 11 2.7547 - 2.6685 1.00 2727 144 0.1769 0.2008 REMARK 3 12 2.6685 - 2.5923 0.99 2707 146 0.1822 0.2416 REMARK 3 13 2.5923 - 2.5240 0.99 2745 141 0.1837 0.2409 REMARK 3 14 2.5240 - 2.4624 0.99 2719 142 0.1779 0.2154 REMARK 3 15 2.4624 - 2.4064 0.99 2696 166 0.1825 0.2102 REMARK 3 16 2.4064 - 2.3552 0.99 2754 122 0.1789 0.2221 REMARK 3 17 2.3552 - 2.3081 0.99 2701 144 0.1825 0.2096 REMARK 3 18 2.3081 - 2.2646 1.00 2718 157 0.1831 0.2616 REMARK 3 19 2.2646 - 2.2241 0.99 2695 134 0.1899 0.2216 REMARK 3 20 2.2241 - 2.1864 0.99 2732 139 0.1890 0.2482 REMARK 3 21 2.1864 - 2.1511 0.99 2693 143 0.1999 0.2489 REMARK 3 22 2.1511 - 2.1180 1.00 2736 138 0.1922 0.2069 REMARK 3 23 2.1180 - 2.0869 0.99 2710 133 0.1965 0.2282 REMARK 3 24 2.0869 - 2.0575 1.00 2669 159 0.2112 0.2362 REMARK 3 25 2.0575 - 2.0297 0.99 2740 138 0.2066 0.2588 REMARK 3 26 2.0297 - 2.0033 0.99 2694 137 0.2275 0.2662 REMARK 3 27 2.0033 - 1.9783 1.00 2704 147 0.2398 0.2866 REMARK 3 28 1.9783 - 1.9544 0.99 2694 139 0.2461 0.3100 REMARK 3 29 1.9544 - 1.9317 0.99 2693 133 0.2494 0.2362 REMARK 3 30 1.9317 - 1.9100 0.97 2691 123 0.2606 0.3057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6579 REMARK 3 ANGLE : 1.415 8959 REMARK 3 CHIRALITY : 0.069 1000 REMARK 3 PLANARITY : 0.007 1159 REMARK 3 DIHEDRAL : 13.688 2423 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1594 18.1721 -32.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.3372 T22: 0.5020 REMARK 3 T33: 0.2712 T12: -0.0078 REMARK 3 T13: 0.0682 T23: -0.0588 REMARK 3 L TENSOR REMARK 3 L11: 0.9047 L22: 3.9989 REMARK 3 L33: 0.6988 L12: -0.5185 REMARK 3 L13: 0.7713 L23: 0.3320 REMARK 3 S TENSOR REMARK 3 S11: 0.0835 S12: 0.5807 S13: -0.1334 REMARK 3 S21: -0.4842 S22: -0.1121 S23: 0.0087 REMARK 3 S31: 0.1244 S32: -0.0482 S33: 0.1006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6600 17.6297 -9.4851 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.1730 REMARK 3 T33: 0.1503 T12: -0.0508 REMARK 3 T13: 0.0038 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 3.9461 L22: 0.8910 REMARK 3 L33: 1.3872 L12: 0.1127 REMARK 3 L13: -0.8087 L23: -0.1369 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: 0.1890 S13: -0.1082 REMARK 3 S21: 0.1514 S22: -0.0293 S23: 0.0362 REMARK 3 S31: 0.0806 S32: -0.1446 S33: 0.0928 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.9362 29.0766 -11.3682 REMARK 3 T TENSOR REMARK 3 T11: 0.2518 T22: 0.5006 REMARK 3 T33: 0.3295 T12: -0.0155 REMARK 3 T13: 0.0002 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.9365 L22: 7.3905 REMARK 3 L33: 6.3663 L12: -0.7712 REMARK 3 L13: -0.0213 L23: -5.4650 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.4477 S13: 0.4920 REMARK 3 S21: -0.1048 S22: 0.2658 S23: 0.5062 REMARK 3 S31: 0.0102 S32: -0.7955 S33: -0.1763 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4593 22.7685 -5.2516 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.2055 REMARK 3 T33: 0.1655 T12: -0.0408 REMARK 3 T13: 0.0134 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.1796 L22: 1.0392 REMARK 3 L33: 1.0775 L12: -0.1781 REMARK 3 L13: -0.5091 L23: -0.0480 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.0569 S13: 0.0383 REMARK 3 S21: 0.0883 S22: 0.0013 S23: 0.0776 REMARK 3 S31: 0.0185 S32: -0.1456 S33: 0.0403 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9176 35.7460 -24.7428 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.3616 REMARK 3 T33: 0.2062 T12: 0.0109 REMARK 3 T13: 0.0207 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 2.3779 L22: 2.3216 REMARK 3 L33: 1.4961 L12: -0.2378 REMARK 3 L13: 0.6829 L23: -1.0900 REMARK 3 S TENSOR REMARK 3 S11: -0.1351 S12: 0.3941 S13: 0.5284 REMARK 3 S21: -0.1580 S22: 0.0753 S23: 0.1743 REMARK 3 S31: -0.1192 S32: -0.2698 S33: 0.0555 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4577 4.1315 -1.2391 REMARK 3 T TENSOR REMARK 3 T11: 0.3517 T22: 0.2625 REMARK 3 T33: 0.3448 T12: -0.0937 REMARK 3 T13: -0.0262 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 6.1891 L22: 1.6937 REMARK 3 L33: 1.2092 L12: -3.0600 REMARK 3 L13: -1.3566 L23: -0.2129 REMARK 3 S TENSOR REMARK 3 S11: -0.3033 S12: -0.3397 S13: -1.0092 REMARK 3 S21: 0.2725 S22: -0.0371 S23: 0.2002 REMARK 3 S31: 0.0932 S32: 0.1265 S33: 0.3682 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3655 -1.8239 -23.5459 REMARK 3 T TENSOR REMARK 3 T11: 0.3757 T22: 0.2899 REMARK 3 T33: 0.3033 T12: -0.0533 REMARK 3 T13: 0.0362 T23: -0.1259 REMARK 3 L TENSOR REMARK 3 L11: 1.8640 L22: 3.4188 REMARK 3 L33: 1.0137 L12: 0.1088 REMARK 3 L13: 0.1690 L23: 0.5479 REMARK 3 S TENSOR REMARK 3 S11: 0.0616 S12: 0.3112 S13: -0.5214 REMARK 3 S21: 0.0744 S22: -0.2165 S23: 0.0760 REMARK 3 S31: 0.3904 S32: -0.0439 S33: 0.0845 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3031 -1.3390 -26.0152 REMARK 3 T TENSOR REMARK 3 T11: 0.3436 T22: 0.3063 REMARK 3 T33: 0.3054 T12: 0.0185 REMARK 3 T13: 0.0443 T23: -0.0859 REMARK 3 L TENSOR REMARK 3 L11: 1.4774 L22: 1.7301 REMARK 3 L33: 1.2985 L12: -0.3434 REMARK 3 L13: -0.1367 L23: -0.0447 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: 0.3428 S13: -0.4023 REMARK 3 S21: -0.2139 S22: -0.1626 S23: -0.1656 REMARK 3 S31: 0.3692 S32: 0.1574 S33: 0.0947 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3724 -11.3717 -3.6579 REMARK 3 T TENSOR REMARK 3 T11: 0.5640 T22: 0.3705 REMARK 3 T33: 0.6662 T12: 0.0682 REMARK 3 T13: -0.0438 T23: 0.1595 REMARK 3 L TENSOR REMARK 3 L11: 2.5402 L22: 2.1285 REMARK 3 L33: 2.5852 L12: 0.0886 REMARK 3 L13: 0.4026 L23: 0.0284 REMARK 3 S TENSOR REMARK 3 S11: 0.2188 S12: -0.2933 S13: -0.6599 REMARK 3 S21: 0.0967 S22: -0.7337 S23: -0.9827 REMARK 3 S31: 0.7674 S32: 0.4410 S33: 0.3732 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 - 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 86.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M TRI-SODIUM CITRATE, 0.1 M SODIUM REMARK 280 CACODYLATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.20900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.07950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.28200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.07950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.20900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.28200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 411 REMARK 465 GLU A 412 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 409 REMARK 465 ASN B 410 REMARK 465 ARG B 411 REMARK 465 GLU B 412 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 ASN A 410 CG OD1 ND2 REMARK 470 GLN B 17 CG CD OE1 NE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 ARG B 348 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 63 HH TYR B 73 1.56 REMARK 500 HH TYR A 133 O HOH A 800 1.57 REMARK 500 O HOH A 720 O HOH A 751 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 146 CB VAL A 146 CG1 -0.152 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 7 -64.62 -148.28 REMARK 500 LYS A 35 -113.67 -80.99 REMARK 500 SER A 109 -163.32 60.27 REMARK 500 LYS A 129 -39.66 -133.72 REMARK 500 TRP A 139 114.63 -29.58 REMARK 500 TYR A 159 -58.04 -146.93 REMARK 500 ASP A 168 77.03 -100.35 REMARK 500 LEU A 261 42.48 -93.63 REMARK 500 TYR A 294 5.98 -152.60 REMARK 500 THR A 295 -52.17 68.18 REMARK 500 MET B 7 -57.39 -127.08 REMARK 500 SER B 109 -159.77 58.19 REMARK 500 TYR B 159 -65.69 -149.41 REMARK 500 LEU B 261 44.06 -95.15 REMARK 500 TYR B 294 6.85 -151.61 REMARK 500 THR B 295 -59.48 70.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 745 DISTANCE = 5.88 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC B 501 DBREF 4WB0 A 1 412 UNP Q71PB4 Q71PB4_LEIME 1 412 DBREF 4WB0 B 1 412 UNP Q71PB4 Q71PB4_LEIME 1 412 SEQADV 4WB0 GLY A -1 UNP Q71PB4 EXPRESSION TAG SEQADV 4WB0 HIS A 0 UNP Q71PB4 EXPRESSION TAG SEQADV 4WB0 GLY B -1 UNP Q71PB4 EXPRESSION TAG SEQADV 4WB0 HIS B 0 UNP Q71PB4 EXPRESSION TAG SEQRES 1 A 414 GLY HIS MET SER THR GLN ALA ALA MET THR THR THR GLU SEQRES 2 A 414 ARG TRP GLN LYS ILE GLN GLY ARG ALA PRO ASP PRO ILE SEQRES 3 A 414 PHE GLU LEU ALA LYS ARG ALA ALA ALA ALA LYS GLY PRO SEQRES 4 A 414 LYS ALA ASN LEU VAL ILE GLY ALA TYR ARG ASP GLU GLN SEQRES 5 A 414 GLY LEU PRO TYR PRO LEU ARG VAL VAL ARG LYS ALA GLU SEQRES 6 A 414 GLN LEU LEU LEU ASP MET ASN LEU ASN TYR GLU TYR LEU SEQRES 7 A 414 PRO ILE SER GLY TYR GLN PRO PHE ILE ASP GLU ALA VAL SEQRES 8 A 414 LYS MET THR TYR GLY ASP THR VAL GLU LEU GLU ASN LEU SEQRES 9 A 414 VAL ALA VAL GLN THR LEU SER GLY THR GLY ALA LEU SER SEQRES 10 A 414 LEU GLY ALA LYS LEU LEU THR HIS VAL PHE ASP ALA GLU SEQRES 11 A 414 LYS THR PRO ILE TYR LEU ALA ASP PRO THR TRP PRO ASN SEQRES 12 A 414 HIS TYR SER ILE VAL LYS ALA ALA GLY TRP LYS ASP ILE SEQRES 13 A 414 ARG THR TYR ALA TYR TYR ASP HIS LYS THR LEU GLY LEU SEQRES 14 A 414 ASP PHE GLU GLY MET LYS LYS ASP ILE LEU ALA ALA PRO SEQRES 15 A 414 ASP GLY SER VAL PHE LEU LEU HIS GLN CYS ALA HIS ASN SEQRES 16 A 414 PRO THR GLY VAL ASP PRO SER GLN GLU GLN TRP ASN GLU SEQRES 17 A 414 ILE ALA SER LEU MET LEU ALA LYS HIS HIS GLN VAL PHE SEQRES 18 A 414 PHE ASP SER ALA TYR GLN GLY TYR ALA SER GLY SER LEU SEQRES 19 A 414 ASP THR ASP ALA TYR ALA ALA ARG LEU PHE ALA ARG ARG SEQRES 20 A 414 GLY ILE GLU VAL LEU LEU ALA GLN SER PHE SER LYS ASN SEQRES 21 A 414 MET GLY LEU TYR SER GLU ARG ALA GLY THR LEU SER LEU SEQRES 22 A 414 LEU LEU LYS ASP LYS THR LYS ARG ALA ASP VAL LYS SER SEQRES 23 A 414 VAL MET ASP SER LEU ILE ARG ALA GLU TYR THR CSO PRO SEQRES 24 A 414 PRO ALA HIS GLY ALA ARG LEU ALA HIS LEU ILE LEU SER SEQRES 25 A 414 ASN ASN GLU LEU ARG LYS GLU TRP GLU ALA GLU LEU SER SEQRES 26 A 414 ALA MET ALA GLU ARG ILE ARG THR MET ARG ARG THR VAL SEQRES 27 A 414 TYR ASP GLU LEU LEU ARG LEU GLN THR PRO GLY ARG TRP SEQRES 28 A 414 GLU HIS VAL ILE ASN GLN ILE GLY MET PHE SER PHE LEU SEQRES 29 A 414 GLY LEU SER LYS GLU GLN CYS GLU TYR CYS GLN ASN HIS SEQRES 30 A 414 ASN ILE PHE ILE THR LEU SER GLY ARG ALA ASN ILE ALA SEQRES 31 A 414 GLY LEU THR HIS GLU THR ALA LEU MET LEU ALA GLN THR SEQRES 32 A 414 ILE ASN ASP ALA VAL ARG ASN VAL ASN ARG GLU SEQRES 1 B 414 GLY HIS MET SER THR GLN ALA ALA MET THR THR THR GLU SEQRES 2 B 414 ARG TRP GLN LYS ILE GLN GLY ARG ALA PRO ASP PRO ILE SEQRES 3 B 414 PHE GLU LEU ALA LYS ARG ALA ALA ALA ALA LYS GLY PRO SEQRES 4 B 414 LYS ALA ASN LEU VAL ILE GLY ALA TYR ARG ASP GLU GLN SEQRES 5 B 414 GLY LEU PRO TYR PRO LEU ARG VAL VAL ARG LYS ALA GLU SEQRES 6 B 414 GLN LEU LEU LEU ASP MET ASN LEU ASN TYR GLU TYR LEU SEQRES 7 B 414 PRO ILE SER GLY TYR GLN PRO PHE ILE ASP GLU ALA VAL SEQRES 8 B 414 LYS MET THR TYR GLY ASP THR VAL GLU LEU GLU ASN LEU SEQRES 9 B 414 VAL ALA VAL GLN THR LEU SER GLY THR GLY ALA LEU SER SEQRES 10 B 414 LEU GLY ALA LYS LEU LEU THR HIS VAL PHE ASP ALA GLU SEQRES 11 B 414 LYS THR PRO ILE TYR LEU ALA ASP PRO THR TRP PRO ASN SEQRES 12 B 414 HIS TYR SER ILE VAL LYS ALA ALA GLY TRP LYS ASP ILE SEQRES 13 B 414 ARG THR TYR ALA TYR TYR ASP HIS LYS THR LEU GLY LEU SEQRES 14 B 414 ASP PHE GLU GLY MET LYS LYS ASP ILE LEU ALA ALA PRO SEQRES 15 B 414 ASP GLY SER VAL PHE LEU LEU HIS GLN CYS ALA HIS ASN SEQRES 16 B 414 PRO THR GLY VAL ASP PRO SER GLN GLU GLN TRP ASN GLU SEQRES 17 B 414 ILE ALA SER LEU MET LEU ALA LYS HIS HIS GLN VAL PHE SEQRES 18 B 414 PHE ASP SER ALA TYR GLN GLY TYR ALA SER GLY SER LEU SEQRES 19 B 414 ASP THR ASP ALA TYR ALA ALA ARG LEU PHE ALA ARG ARG SEQRES 20 B 414 GLY ILE GLU VAL LEU LEU ALA GLN SER PHE SER LYS ASN SEQRES 21 B 414 MET GLY LEU TYR SER GLU ARG ALA GLY THR LEU SER LEU SEQRES 22 B 414 LEU LEU LYS ASP LYS THR LYS ARG ALA ASP VAL LYS SER SEQRES 23 B 414 VAL MET ASP SER LEU ILE ARG ALA GLU TYR THR CYS PRO SEQRES 24 B 414 PRO ALA HIS GLY ALA ARG LEU ALA HIS LEU ILE LEU SER SEQRES 25 B 414 ASN ASN GLU LEU ARG LYS GLU TRP GLU ALA GLU LEU SER SEQRES 26 B 414 ALA MET ALA GLU ARG ILE ARG THR MET ARG ARG THR VAL SEQRES 27 B 414 TYR ASP GLU LEU LEU ARG LEU GLN THR PRO GLY ARG TRP SEQRES 28 B 414 GLU HIS VAL ILE ASN GLN ILE GLY MET PHE SER PHE LEU SEQRES 29 B 414 GLY LEU SER LYS GLU GLN CYS GLU TYR CYS GLN ASN HIS SEQRES 30 B 414 ASN ILE PHE ILE THR LEU SER GLY ARG ALA ASN ILE ALA SEQRES 31 B 414 GLY LEU THR HIS GLU THR ALA LEU MET LEU ALA GLN THR SEQRES 32 B 414 ILE ASN ASP ALA VAL ARG ASN VAL ASN ARG GLU MODRES 4WB0 CSO A 296 CYS MODIFIED RESIDUE HET CSO A 296 11 HET CAC A 501 11 HET CAC B 501 11 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 CAC 2(C2 H6 AS O2 1-) FORMUL 5 HOH *474(H2 O) HELIX 1 AA1 THR A 8 LYS A 15 1 8 HELIX 2 AA2 ASP A 22 ALA A 34 1 13 HELIX 3 AA3 LEU A 56 ASN A 70 1 15 HELIX 4 AA4 TYR A 81 GLY A 94 1 14 HELIX 5 AA5 GLU A 98 GLU A 100 5 3 HELIX 6 AA6 SER A 109 THR A 122 1 14 HELIX 7 AA7 TRP A 139 ALA A 149 1 11 HELIX 8 AA8 ASP A 168 ALA A 179 1 12 HELIX 9 AA9 SER A 200 LYS A 214 1 15 HELIX 10 AB1 SER A 231 ALA A 236 1 6 HELIX 11 AB2 ALA A 236 ARG A 245 1 10 HELIX 12 AB3 LEU A 261 GLU A 264 5 4 HELIX 13 AB4 ASP A 275 THR A 277 5 3 HELIX 14 AB5 LYS A 278 ALA A 292 1 15 HELIX 15 AB6 PRO A 298 ASN A 311 1 14 HELIX 16 AB7 ASN A 311 LEU A 343 1 33 HELIX 17 AB8 TRP A 349 GLN A 355 1 7 HELIX 18 AB9 SER A 365 HIS A 375 1 11 HELIX 19 AC1 ALA A 388 LEU A 390 5 3 HELIX 20 AC2 THR A 391 VAL A 409 1 19 HELIX 21 AC3 THR B 8 LYS B 15 1 8 HELIX 22 AC4 ASP B 22 ALA B 34 1 13 HELIX 23 AC5 LEU B 56 ASP B 68 1 13 HELIX 24 AC6 TYR B 81 GLY B 94 1 14 HELIX 25 AC7 THR B 96 GLU B 100 5 5 HELIX 26 AC8 SER B 109 THR B 122 1 14 HELIX 27 AC9 TRP B 139 GLY B 150 1 12 HELIX 28 AD1 ASP B 168 ALA B 179 1 12 HELIX 29 AD2 SER B 200 HIS B 215 1 16 HELIX 30 AD3 SER B 231 ALA B 236 1 6 HELIX 31 AD4 ALA B 236 ARG B 245 1 10 HELIX 32 AD5 ASP B 275 ALA B 292 1 18 HELIX 33 AD6 ALA B 299 ASN B 311 1 13 HELIX 34 AD7 ASN B 311 LEU B 343 1 33 HELIX 35 AD8 GLU B 350 GLN B 355 1 6 HELIX 36 AD9 SER B 365 HIS B 375 1 11 HELIX 37 AE1 ALA B 388 LEU B 390 5 3 HELIX 38 AE2 THR B 391 ASN B 408 1 18 SHEET 1 AA1 2 ALA A 39 ASN A 40 0 SHEET 2 AA1 2 ILE A 377 PHE A 378 1 O PHE A 378 N ALA A 39 SHEET 1 AA2 7 LEU A 102 LEU A 108 0 SHEET 2 AA2 7 ALA A 266 LEU A 272 -1 O LEU A 271 N VAL A 103 SHEET 3 AA2 7 LEU A 250 SER A 254 -1 N GLN A 253 O THR A 268 SHEET 4 AA2 7 GLN A 217 SER A 222 1 N SER A 222 O ALA A 252 SHEET 5 AA2 7 VAL A 184 HIS A 188 1 N PHE A 185 O PHE A 219 SHEET 6 AA2 7 ILE A 132 ASP A 136 1 N TYR A 133 O VAL A 184 SHEET 7 AA2 7 ILE A 154 ALA A 158 1 O ARG A 155 N ILE A 132 SHEET 1 AA3 2 TYR A 160 ASP A 161 0 SHEET 2 AA3 2 GLY A 166 LEU A 167 -1 O GLY A 166 N ASP A 161 SHEET 1 AA4 2 PHE A 359 PHE A 361 0 SHEET 2 AA4 2 ARG A 384 ASN A 386 -1 O ALA A 385 N SER A 360 SHEET 1 AA5 2 ALA B 39 ASN B 40 0 SHEET 2 AA5 2 ILE B 377 PHE B 378 1 O PHE B 378 N ALA B 39 SHEET 1 AA6 7 LEU B 102 LEU B 108 0 SHEET 2 AA6 7 ALA B 266 LEU B 272 -1 O LEU B 271 N VAL B 103 SHEET 3 AA6 7 LEU B 250 SER B 254 -1 N GLN B 253 O THR B 268 SHEET 4 AA6 7 GLN B 217 SER B 222 1 N SER B 222 O ALA B 252 SHEET 5 AA6 7 VAL B 184 HIS B 188 1 N LEU B 187 O ASP B 221 SHEET 6 AA6 7 ILE B 132 ASP B 136 1 N TYR B 133 O VAL B 184 SHEET 7 AA6 7 ILE B 154 ALA B 158 1 O ARG B 155 N ILE B 132 SHEET 1 AA7 2 PHE B 359 PHE B 361 0 SHEET 2 AA7 2 ARG B 384 ASN B 386 -1 O ALA B 385 N SER B 360 LINK C THR A 295 N CSO A 296 1555 1555 1.32 LINK C CSO A 296 N PRO A 297 1555 1555 1.35 CISPEP 1 ASP A 136 PRO A 137 0 -4.22 CISPEP 2 ASN A 193 PRO A 194 0 17.35 CISPEP 3 ASP B 136 PRO B 137 0 -7.53 CISPEP 4 ASN B 193 PRO B 194 0 16.99 SITE 1 AC1 7 SER A 109 GLY A 110 THR A 111 SER A 254 SITE 2 AC1 7 SER A 256 ARG A 265 TYR B 75 SITE 1 AC2 8 TYR A 75 SER B 109 GLY B 110 THR B 111 SITE 2 AC2 8 SER B 254 SER B 256 LYS B 257 ARG B 265 CRYST1 86.418 90.564 142.159 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011572 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007034 0.00000