HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-SEP-14 4WB5 TITLE CRYSTAL STRUCTURE OF HUMAN CAMP-DEPENDENT PROTEIN KINASE A (CATALYTIC TITLE 2 ALPHA SUBUNIT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PKI (5-24); COMPND 9 CHAIN: I; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKACA, PKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLATE11; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS CATALYSIS, PROTEIN KINASE, ADENOSINE TRIPHOSPHATE, PHOSPHORYLATION, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEUNG,C.GINTER,M.CASSIDY,M.C.FRANKLIN,M.J.RUDOLPH,W.A.HENDRICKSON REVDAT 6 27-SEP-23 4WB5 1 REMARK LINK REVDAT 5 22-NOV-17 4WB5 1 SOURCE KEYWDS JRNL REMARK REVDAT 4 25-FEB-15 4WB5 1 REMARK REVDAT 3 11-FEB-15 4WB5 1 JRNL REVDAT 2 04-FEB-15 4WB5 1 JRNL REVDAT 1 21-JAN-15 4WB5 0 JRNL AUTH J.CHEUNG,C.GINTER,M.CASSIDY,M.C.FRANKLIN,M.J.RUDOLPH, JRNL AUTH 2 N.ROBINE,R.B.DARNELL,W.A.HENDRICKSON JRNL TITL STRUCTURAL INSIGHTS INTO MIS-REGULATION OF PROTEIN KINASE A JRNL TITL 2 IN HUMAN TUMORS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 1374 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 25605907 JRNL DOI 10.1073/PNAS.1424206112 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 54455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5981 - 4.3765 0.98 2895 151 0.1469 0.1483 REMARK 3 2 4.3765 - 3.4746 0.99 2796 153 0.1362 0.1714 REMARK 3 3 3.4746 - 3.0356 1.00 2784 152 0.1630 0.1871 REMARK 3 4 3.0356 - 2.7582 1.00 2756 150 0.1703 0.2277 REMARK 3 5 2.7582 - 2.5605 1.00 2763 163 0.1729 0.2263 REMARK 3 6 2.5605 - 2.4096 1.00 2712 170 0.1682 0.2149 REMARK 3 7 2.4096 - 2.2889 1.00 2743 141 0.1648 0.1947 REMARK 3 8 2.2889 - 2.1893 1.00 2741 153 0.1656 0.2076 REMARK 3 9 2.1893 - 2.1050 1.00 2756 125 0.1614 0.1977 REMARK 3 10 2.1050 - 2.0324 1.00 2729 119 0.1620 0.1811 REMARK 3 11 2.0324 - 1.9689 1.00 2767 111 0.1709 0.2082 REMARK 3 12 1.9689 - 1.9126 1.00 2752 142 0.1846 0.2131 REMARK 3 13 1.9126 - 1.8622 1.00 2747 130 0.1984 0.2731 REMARK 3 14 1.8622 - 1.8168 1.00 2706 145 0.1920 0.2335 REMARK 3 15 1.8168 - 1.7755 1.00 2733 134 0.1869 0.2390 REMARK 3 16 1.7755 - 1.7377 1.00 2714 135 0.1970 0.2394 REMARK 3 17 1.7377 - 1.7030 1.00 2739 125 0.2060 0.2039 REMARK 3 18 1.7030 - 1.6708 1.00 2714 134 0.2316 0.2879 REMARK 3 19 1.6708 - 1.6410 0.83 2267 108 0.2485 0.3354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3162 REMARK 3 ANGLE : 1.372 4295 REMARK 3 CHIRALITY : 0.073 449 REMARK 3 PLANARITY : 0.007 548 REMARK 3 DIHEDRAL : 14.174 1187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1574 1.3557 18.0822 REMARK 3 T TENSOR REMARK 3 T11: 0.3270 T22: 0.3562 REMARK 3 T33: 0.3154 T12: 0.0670 REMARK 3 T13: 0.0848 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 7.9450 L22: 3.7200 REMARK 3 L33: 3.4917 L12: -4.6879 REMARK 3 L13: 0.9980 L23: -1.7184 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: -0.2965 S13: 0.2966 REMARK 3 S21: 0.7186 S22: 0.1031 S23: 0.5797 REMARK 3 S31: -0.6046 S32: -0.8347 S33: -0.0630 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.0330 -20.1675 1.2502 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.2610 REMARK 3 T33: 0.2849 T12: -0.0993 REMARK 3 T13: 0.0028 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 1.4493 L22: 1.0902 REMARK 3 L33: 4.5148 L12: -0.5108 REMARK 3 L13: -1.6105 L23: -0.9250 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: -0.0649 S13: -0.0554 REMARK 3 S21: -0.1106 S22: -0.0035 S23: 0.0365 REMARK 3 S31: 0.4784 S32: 0.0974 S33: 0.0283 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.3750 -19.4487 0.0881 REMARK 3 T TENSOR REMARK 3 T11: 0.1752 T22: 0.1896 REMARK 3 T33: 0.1830 T12: -0.0448 REMARK 3 T13: 0.0258 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 4.1748 L22: 2.2450 REMARK 3 L33: 4.6404 L12: 0.0141 REMARK 3 L13: 2.8799 L23: -0.0411 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.2152 S13: -0.2331 REMARK 3 S21: -0.1454 S22: 0.0693 S23: 0.1406 REMARK 3 S31: 0.3476 S32: -0.1017 S33: -0.0239 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6238 -4.3353 1.9636 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1955 REMARK 3 T33: 0.1764 T12: -0.0054 REMARK 3 T13: -0.0122 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.7242 L22: 1.5446 REMARK 3 L33: 2.0876 L12: 0.1534 REMARK 3 L13: -0.0396 L23: -0.5762 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: 0.0862 S13: -0.0045 REMARK 3 S21: -0.0741 S22: 0.0710 S23: 0.1836 REMARK 3 S31: -0.0353 S32: -0.2902 S33: -0.0492 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6020 3.1810 3.7593 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1496 REMARK 3 T33: 0.1372 T12: 0.0074 REMARK 3 T13: -0.0060 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0332 L22: 2.0481 REMARK 3 L33: 3.4687 L12: 0.4809 REMARK 3 L13: -0.4022 L23: -1.1029 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.0843 S13: 0.0214 REMARK 3 S21: 0.0122 S22: -0.1332 S23: -0.1173 REMARK 3 S31: -0.1753 S32: 0.2502 S33: 0.1289 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0673 18.2442 2.8453 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.1498 REMARK 3 T33: 0.2700 T12: 0.0034 REMARK 3 T13: -0.0132 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 2.7110 L22: 2.6766 REMARK 3 L33: 4.1480 L12: 0.4257 REMARK 3 L13: 0.3946 L23: -0.9003 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.1078 S13: 0.4257 REMARK 3 S21: 0.2416 S22: -0.0327 S23: -0.0216 REMARK 3 S31: -0.8948 S32: 0.0511 S33: 0.0344 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.4288 8.9881 -3.4718 REMARK 3 T TENSOR REMARK 3 T11: 0.3161 T22: 0.4584 REMARK 3 T33: 0.3992 T12: 0.1598 REMARK 3 T13: -0.0940 T23: 0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.6537 L22: 3.7999 REMARK 3 L33: 2.3302 L12: 0.5658 REMARK 3 L13: -0.4887 L23: 1.5259 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: 0.3050 S13: 0.1586 REMARK 3 S21: -0.4321 S22: -0.1082 S23: 0.7188 REMARK 3 S31: -0.2927 S32: -0.5961 S33: 0.0653 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9659 -19.8060 -1.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.1852 T22: 0.2226 REMARK 3 T33: 0.2447 T12: -0.0589 REMARK 3 T13: 0.0416 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.5497 L22: 4.2686 REMARK 3 L33: 6.5301 L12: 0.0760 REMARK 3 L13: 0.5981 L23: -2.9106 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.1205 S13: -0.1858 REMARK 3 S21: -0.4654 S22: 0.0273 S23: -0.0994 REMARK 3 S31: 0.7220 S32: -0.0488 S33: -0.1097 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 5 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0525 8.1080 -16.0968 REMARK 3 T TENSOR REMARK 3 T11: 0.2188 T22: 0.2615 REMARK 3 T33: 0.1840 T12: -0.0273 REMARK 3 T13: -0.0140 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 5.1304 L22: 8.2252 REMARK 3 L33: 8.1515 L12: -1.2933 REMARK 3 L13: -3.3026 L23: -5.5255 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0771 S13: -0.0239 REMARK 3 S21: 0.0094 S22: -0.2125 S23: 0.4215 REMARK 3 S31: -0.3441 S32: 0.0914 S33: 0.2041 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'I' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0108 -3.8996 -4.1142 REMARK 3 T TENSOR REMARK 3 T11: 0.3985 T22: 0.2366 REMARK 3 T33: 0.2048 T12: 0.0574 REMARK 3 T13: 0.0575 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 5.9697 L22: 4.1866 REMARK 3 L33: 0.9133 L12: 2.2219 REMARK 3 L13: 0.3995 L23: -0.0275 REMARK 3 S TENSOR REMARK 3 S11: -0.3103 S12: -0.6103 S13: -0.5851 REMARK 3 S21: 0.5864 S22: -0.0363 S23: -0.3455 REMARK 3 S31: 0.9666 S32: 0.0174 S33: 0.2447 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54512 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.641 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.84600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4WB8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 0.1M HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.58900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.35800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.54550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.35800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.58900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.54550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 44.17 -149.32 REMARK 500 ASP A 184 80.02 68.94 REMARK 500 ASN A 216 -157.96 -140.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 774 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 839 DISTANCE = 6.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 ASP A 184 OD2 94.5 REMARK 620 3 ATP A 401 O2G 107.1 87.6 REMARK 620 4 ATP A 401 O3B 176.7 86.3 69.7 REMARK 620 5 ATP A 401 O1A 93.3 91.8 159.6 89.9 REMARK 620 6 HOH A 691 O 87.8 177.3 90.3 91.3 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 58.5 REMARK 620 3 ATP A 401 O3G 150.2 91.8 REMARK 620 4 ATP A 401 O2B 87.1 87.2 94.6 REMARK 620 5 HOH A 577 O 82.7 90.2 95.9 169.3 REMARK 620 6 HOH A 580 O 101.6 160.1 108.0 91.0 87.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WB6 RELATED DB: PDB REMARK 900 RELATED ID: 4WB7 RELATED DB: PDB REMARK 900 RELATED ID: 4WB8 RELATED DB: PDB DBREF 4WB5 A 1 350 UNP P17612 KAPCA_HUMAN 2 351 DBREF 4WB5 I 5 24 PDB 4WB5 4WB5 5 24 SEQRES 1 A 350 GLY ASN ALA ALA ALA ALA LYS LYS GLY SER GLU GLN GLU SEQRES 2 A 350 SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP PHE SEQRES 3 A 350 LEU LYS LYS TRP GLU SER PRO ALA GLN ASN THR ALA HIS SEQRES 4 A 350 LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR GLY SEQRES 5 A 350 SER PHE GLY ARG VAL MET LEU VAL LYS HIS LYS GLU THR SEQRES 6 A 350 GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN LYS SEQRES 7 A 350 VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN GLU SEQRES 8 A 350 LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU VAL SEQRES 9 A 350 LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU TYR SEQRES 10 A 350 MET VAL MET GLU TYR VAL PRO GLY GLY GLU MET PHE SER SEQRES 11 A 350 HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS ALA SEQRES 12 A 350 ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU TYR SEQRES 13 A 350 LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS PRO SEQRES 14 A 350 GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR ILE GLN VAL SEQRES 15 A 350 THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG THR SEQRES 16 A 350 TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO GLU SEQRES 17 A 350 ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP TRP SEQRES 18 A 350 TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA GLY SEQRES 19 A 350 TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE TYR SEQRES 20 A 350 GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER HIS SEQRES 21 A 350 PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU LEU SEQRES 22 A 350 GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS ASN SEQRES 23 A 350 GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA THR SEQRES 24 A 350 THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU ALA SEQRES 25 A 350 PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SER SEQRES 26 A 350 ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEP SEQRES 27 A 350 ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4WB5 SEP A 139 SER MODIFIED RESIDUE MODRES 4WB5 TPO A 197 THR MODIFIED RESIDUE MODRES 4WB5 SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET ATP A 401 31 HET MG A 402 1 HET MG A 403 1 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *405(H2 O) HELIX 1 AA1 GLU A 13 SER A 32 1 20 HELIX 2 AA2 HIS A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 GLN A 96 1 13 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 THR I 6 ALA I 12 1 7 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 ARG A 56 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.34 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.34 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 LINK OD1 ASN A 171 MG MG A 402 1555 1555 2.09 LINK OD2 ASP A 184 MG MG A 402 1555 1555 2.07 LINK OD1 ASP A 184 MG MG A 403 1555 1555 2.27 LINK OD2 ASP A 184 MG MG A 403 1555 1555 2.25 LINK O2G ATP A 401 MG MG A 402 1555 1555 2.05 LINK O3B ATP A 401 MG MG A 402 1555 1555 2.31 LINK O1A ATP A 401 MG MG A 402 1555 1555 1.95 LINK O3G ATP A 401 MG MG A 403 1555 1555 1.93 LINK O2B ATP A 401 MG MG A 403 1555 1555 2.12 LINK MG MG A 402 O HOH A 691 1555 1555 2.12 LINK MG MG A 403 O HOH A 577 1555 1555 2.19 LINK MG MG A 403 O HOH A 580 1555 1555 1.99 SITE 1 AC1 29 GLY A 52 SER A 53 PHE A 54 GLY A 55 SITE 2 AC1 29 VAL A 57 ALA A 70 LYS A 72 VAL A 104 SITE 3 AC1 29 MET A 120 GLU A 121 VAL A 123 GLU A 127 SITE 4 AC1 29 ASP A 166 LYS A 168 GLU A 170 ASN A 171 SITE 5 AC1 29 LEU A 173 THR A 183 ASP A 184 PHE A 327 SITE 6 AC1 29 MG A 402 MG A 403 HOH A 577 HOH A 580 SITE 7 AC1 29 HOH A 653 HOH A 691 HOH A 843 ARG I 18 SITE 8 AC1 29 ALA I 21 SITE 1 AC2 4 ASN A 171 ASP A 184 ATP A 401 HOH A 691 SITE 1 AC3 4 ASP A 184 ATP A 401 HOH A 577 HOH A 580 CRYST1 73.178 75.091 80.716 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012389 0.00000