HEADER HYDROLASE 03-SEP-14 4WBG
TITLE CRYSTAL STRUCTURE OF CLASS C BETA-LACTAMASE MOX-1 COVALENTLY COMPLEXED
TITLE 2 WITH AZTORENAM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BETA-LACTAMASE;
COMPND 3 CHAIN: A;
COMPND 4 EC: 3.5.2.6;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE;
SOURCE 3 ORGANISM_TAXID: 573;
SOURCE 4 GENE: BLAMOX-1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS BETA-LACTAMASE, AZTREONAM, ACYL-INTERMEDIATE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR T.OGURI,A.SHIMIZU-IBUKA,Y.ISHII
REVDAT 4 23-OCT-24 4WBG 1 LINK
REVDAT 3 29-JAN-20 4WBG 1 JRNL REMARK
REVDAT 2 05-AUG-15 4WBG 1 JRNL
REVDAT 1 01-JUL-15 4WBG 0
JRNL AUTH T.OGURI,Y.ISHII,A.SHIMIZU-IBUKA
JRNL TITL CONFORMATIONAL CHANGE OBSERVED IN THE ACTIVE SITE OF CLASS C
JRNL TITL 2 BETA-LACTAMASE MOX-1 UPON BINDING TO AZTREONAM
JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 59 5069 2015
JRNL REFN ESSN 1098-6596
JRNL PMID 26055361
JRNL DOI 10.1128/AAC.04428-14
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0069
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.72
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 26361
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.177
REMARK 3 R VALUE (WORKING SET) : 0.175
REMARK 3 FREE R VALUE : 0.214
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 1348
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1923
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20
REMARK 3 BIN R VALUE (WORKING SET) : 0.2160
REMARK 3 BIN FREE R VALUE SET COUNT : 90
REMARK 3 BIN FREE R VALUE : 0.2800
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2612
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 47
REMARK 3 SOLVENT ATOMS : 177
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.12
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.00000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.148
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.008
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2710 ; 0.009 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 2573 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3678 ; 1.392 ; 1.977
REMARK 3 BOND ANGLES OTHERS (DEGREES): 5911 ; 0.789 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 344 ; 6.025 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;33.844 ;23.810
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;11.804 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.495 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.077 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3093 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 611 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 1.083 ; 1.766
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1384 ; 1.084 ; 1.764
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1726 ; 1.769 ; 2.637
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1727 ; 1.768 ; 2.637
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1322 ; 1.666 ; 2.011
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1323 ; 1.665 ; 2.011
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1953 ; 2.739 ; 2.937
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3177 ; 4.405 ;14.855
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3117 ; 4.246 ;14.702
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : BABINET MODEL WITH MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 4WBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-SEP-14.
REMARK 100 THE DEPOSITION ID IS D_1000203060.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : NULL
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : AR-NE3A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27737
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 60.950
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4
REMARK 200 DATA REDUNDANCY : 6.770
REMARK 200 R MERGE (I) : 0.07900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.18
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG8000, CACODYLATE, ZINC ACETATE, PH
REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.62500
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13530 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -164.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -20
REMARK 465 GLY A -19
REMARK 465 SER A -18
REMARK 465 SER A -17
REMARK 465 HIS A -16
REMARK 465 HIS A -15
REMARK 465 HIS A -14
REMARK 465 HIS A -13
REMARK 465 HIS A -12
REMARK 465 HIS A -11
REMARK 465 SER A -10
REMARK 465 SER A -9
REMARK 465 GLY A -8
REMARK 465 LEU A -7
REMARK 465 VAL A -6
REMARK 465 PRO A -5
REMARK 465 ARG A -4
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 HIS A -1
REMARK 465 MET A 0
REMARK 465 GLY A 1
REMARK 465 GLU A 2
REMARK 465 ALA A 3
REMARK 465 SER A 4
REMARK 465 PRO A 5
REMARK 465 VAL A 6
REMARK 465 ASN A 214
REMARK 465 PRO A 215
REMARK 465 GLU A 303
REMARK 465 SER A 304
REMARK 465 GLY A 305
REMARK 465 SER A 306
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 138 CG CD OE1 NE2
REMARK 470 LYS A 257 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD2 ASP A 14 O HOH A 1101 2.02
REMARK 500 OE1 GLN A 58 O HOH A 1196 2.11
REMARK 500 OD1 ASP A 231 O HOH A 1218 2.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OE2 GLU A 294 O HOH A 1101 2646 2.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 178 -64.17 -124.62
REMARK 500 TYR A 223 24.85 -164.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1002 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 24 ND1
REMARK 620 2 GLY A 359 OXT 19.0
REMARK 620 3 ACT A1011 O 117.9 135.9
REMARK 620 4 HOH A1139 O 111.6 97.6 103.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1007 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 50 OE1
REMARK 620 2 GLU A 50 OE2 52.6
REMARK 620 3 HIS A 148 NE2 57.5 106.6
REMARK 620 N 1 2
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1003 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 130 OE1
REMARK 620 2 HIS A 186 ND1 92.1
REMARK 620 3 ACT A1009 OXT 103.5 110.1
REMARK 620 4 HOH A1106 O 108.7 130.1 108.2
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1006 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 161 NE2
REMARK 620 2 ACT A1010 OXT 107.3
REMARK 620 3 HOH A1136 O 106.0 98.6
REMARK 620 4 HOH A1263 O 117.0 122.6 102.1
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1008 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN A 191 ND2
REMARK 620 2 HOH A1113 O 60.7
REMARK 620 N 1
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1004 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 207 OE2
REMARK 620 2 VAL A 278 O 102.7
REMARK 620 3 HIS A 351 NE2 98.0 5.0
REMARK 620 4 HOH A1103 O 106.3 73.2 76.0
REMARK 620 5 HOH A1132 O 91.4 31.8 29.0 104.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1005 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 259 ND1
REMARK 620 2 HOH A1213 O 98.6
REMARK 620 3 HOH A1238 O 107.0 110.9
REMARK 620 4 HOH A1272 O 114.2 109.9 115.0
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue AZR A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1003
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1004
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1005
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1006
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1007
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1008
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1009
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1010
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1011
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3W8K RELATED DB: PDB
REMARK 900 3W8K CONTAINS THE SAME PROTEIN WITH NO LIGAND.
DBREF 4WBG A 1 359 UNP Q51578 Q51578_KLEPN 24 382
SEQADV 4WBG MET A -20 UNP Q51578 INITIATING METHIONINE
SEQADV 4WBG GLY A -19 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG SER A -18 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG SER A -17 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -16 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -15 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -14 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -13 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -12 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -11 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG SER A -10 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG SER A -9 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG GLY A -8 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG LEU A -7 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG VAL A -6 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG PRO A -5 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG ARG A -4 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG GLY A -3 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG SER A -2 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG HIS A -1 UNP Q51578 EXPRESSION TAG
SEQADV 4WBG MET A 0 UNP Q51578 EXPRESSION TAG
SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY
SEQRES 2 A 380 LEU VAL PRO ARG GLY SER HIS MET GLY GLU ALA SER PRO
SEQRES 3 A 380 VAL ASP PRO LEU ARG PRO VAL VAL ASP ALA SER ILE GLN
SEQRES 4 A 380 PRO LEU LEU LYS GLU HIS ARG ILE PRO GLY MET ALA VAL
SEQRES 5 A 380 ALA VAL LEU LYS ASP GLY LYS ALA HIS TYR PHE ASN TYR
SEQRES 6 A 380 GLY VAL ALA ASN ARG GLU SER GLY ALA SER VAL SER GLU
SEQRES 7 A 380 GLN THR LEU PHE GLU ILE GLY SER VAL SER LYS THR LEU
SEQRES 8 A 380 THR ALA THR LEU GLY ALA TYR ALA VAL VAL LYS GLY ALA
SEQRES 9 A 380 MET GLN LEU ASP ASP LYS ALA SER ARG HIS ALA PRO TRP
SEQRES 10 A 380 LEU LYS GLY SER VAL PHE ASP SER ILE THR MET GLY GLU
SEQRES 11 A 380 LEU ALA THR TYR SER ALA GLY GLY LEU PRO LEU GLN PHE
SEQRES 12 A 380 PRO GLU GLU VAL ASP SER SER GLU LYS MET ARG ALA TYR
SEQRES 13 A 380 TYR ARG GLN TRP ALA PRO VAL TYR SER PRO GLY SER HIS
SEQRES 14 A 380 ARG GLN TYR SER ASN PRO SER ILE GLY LEU PHE GLY HIS
SEQRES 15 A 380 LEU ALA ALA SER SER LEU LYS GLN PRO PHE ALA GLN LEU
SEQRES 16 A 380 MET GLU GLN THR LEU LEU PRO GLY LEU GLY MET HIS HIS
SEQRES 17 A 380 THR TYR VAL ASN VAL PRO LYS GLN ALA MET ALA SER TYR
SEQRES 18 A 380 ALA TYR GLY TYR SER LYS GLU ASP LYS PRO ILE ARG VAL
SEQRES 19 A 380 ASN PRO GLY MET LEU ALA ASP GLU ALA TYR GLY ILE LYS
SEQRES 20 A 380 THR SER SER ALA ASP LEU LEU ALA PHE VAL LYS ALA ASN
SEQRES 21 A 380 ILE GLY GLY VAL ASP ASP LYS ALA LEU GLN GLN ALA ILE
SEQRES 22 A 380 SER LEU THR HIS LYS GLY HIS TYR SER VAL GLY GLY MET
SEQRES 23 A 380 THR GLN GLY LEU GLY TRP GLU SER TYR ALA TYR PRO VAL
SEQRES 24 A 380 THR GLU GLN THR LEU LEU ALA GLY ASN SER ALA LYS VAL
SEQRES 25 A 380 ILE LEU GLU ALA ASN PRO THR ALA ALA PRO ARG GLU SER
SEQRES 26 A 380 GLY SER GLN VAL LEU PHE ASN LYS THR GLY SER SER ASN
SEQRES 27 A 380 GLY PHE GLY ALA TYR VAL ALA PHE VAL PRO ALA ARG GLY
SEQRES 28 A 380 ILE GLY ILE VAL MET LEU ALA ASN ARG ASN TYR PRO ILE
SEQRES 29 A 380 PRO ALA ARG VAL LYS ALA ALA HIS ALA ILE LEU ALA GLN
SEQRES 30 A 380 LEU ALA GLY
HET AZR A1001 28
HET ZN A1002 1
HET ZN A1003 1
HET ZN A1004 1
HET ZN A1005 1
HET ZN A1006 1
HET ZN A1007 1
HET ZN A1008 1
HET ACT A1009 4
HET ACT A1010 4
HET ACT A1011 4
HETNAM AZR 2-({[(1Z)-1-(2-AMINO-1,3-THIAZOL-4-YL)-2-OXO-2-{[(2S,
HETNAM 2 AZR 3S)-1-OXO-3-(SULFOAMINO)BUTAN-2-
HETNAM 3 AZR YL]AMINO}ETHYLIDENE]AMINO}OXY)-2-METHYLPROPANOIC ACID
HETNAM ZN ZINC ION
HETNAM ACT ACETATE ION
HETSYN AZR AZTREONAM, OPEN FORM
FORMUL 2 AZR C13 H19 N5 O8 S2
FORMUL 3 ZN 7(ZN 2+)
FORMUL 10 ACT 3(C2 H3 O2 1-)
FORMUL 13 HOH *177(H2 O)
HELIX 1 AA1 LEU A 9 HIS A 24 1 16
HELIX 2 AA2 VAL A 66 LYS A 81 1 16
HELIX 3 AA3 LYS A 89 LYS A 98 5 10
HELIX 4 AA4 SER A 100 SER A 104 5 5
HELIX 5 AA5 THR A 106 THR A 112 1 7
HELIX 6 AA6 SER A 128 TRP A 139 1 12
HELIX 7 AA7 SER A 152 LEU A 167 1 16
HELIX 8 AA8 PRO A 170 THR A 178 1 9
HELIX 9 AA9 THR A 178 LEU A 183 1 6
HELIX 10 AB1 PRO A 193 TYR A 200 5 8
HELIX 11 AB2 LEU A 218 GLY A 224 1 7
HELIX 12 AB3 SER A 228 GLY A 241 1 14
HELIX 13 AB4 ASP A 245 THR A 255 1 11
HELIX 14 AB5 THR A 279 ASN A 287 1 9
HELIX 15 AB6 SER A 288 GLU A 294 1 7
HELIX 16 AB7 PRO A 327 GLY A 330 5 4
HELIX 17 AB8 PRO A 342 GLY A 359 1 18
SHEET 1 AA1 9 ALA A 53 SER A 54 0
SHEET 2 AA1 9 LYS A 38 ASN A 48 -1 N ALA A 47 O ALA A 53
SHEET 3 AA1 9 GLY A 28 LYS A 35 -1 N VAL A 31 O PHE A 42
SHEET 4 AA1 9 ILE A 331 ALA A 337 -1 O VAL A 334 N ALA A 32
SHEET 5 AA1 9 PHE A 319 VAL A 326 -1 N ALA A 324 O ILE A 333
SHEET 6 AA1 9 VAL A 308 SER A 316 -1 N GLY A 314 O ALA A 321
SHEET 7 AA1 9 GLU A 272 ALA A 275 -1 N TYR A 274 O LEU A 309
SHEET 8 AA1 9 MET A 265 GLN A 267 -1 N THR A 266 O SER A 273
SHEET 9 AA1 9 TYR A 260 VAL A 262 -1 N TYR A 260 O GLN A 267
SHEET 1 AA2 2 PHE A 61 GLU A 62 0
SHEET 2 AA2 2 LYS A 226 THR A 227 -1 O THR A 227 N PHE A 61
SHEET 1 AA3 2 HIS A 148 ARG A 149 0
SHEET 2 AA3 2 ASN A 296 PRO A 297 -1 O ASN A 296 N ARG A 149
SHEET 1 AA4 2 GLY A 203 TYR A 204 0
SHEET 2 AA4 2 PRO A 210 ILE A 211 -1 O ILE A 211 N GLY A 203
LINK OG SER A 65 C20 AZR A1001 1555 1555 1.51
LINK ND1 HIS A 24 ZN ZN A1002 1555 1555 2.20
LINK OE1 GLU A 50 ZN ZN A1007 1555 1655 2.61
LINK OE2 GLU A 50 ZN ZN A1007 1555 1655 2.23
LINK OE1 GLU A 130 ZN ZN A1003 1555 1555 1.98
LINK NE2 HIS A 148 ZN ZN A1007 1555 1555 2.06
LINK NE2 HIS A 161 ZN ZN A1006 1555 1555 2.11
LINK ND1 HIS A 186 ZN ZN A1003 1555 2655 2.08
LINK ND2 ASN A 191 ZN ZN A1008 1555 2645 2.28
LINK OE2 GLU A 207 ZN ZN A1004 1555 1555 2.02
LINK ND1 HIS A 259 ZN ZN A1005 1555 1555 2.13
LINK O VAL A 278 ZN ZN A1004 1555 2656 2.24
LINK NE2 HIS A 351 ZN ZN A1004 1555 2656 2.17
LINK OXT GLY A 359 ZN ZN A1002 1555 2656 2.07
LINK ZN ZN A1002 O ACT A1011 1555 1555 2.27
LINK ZN ZN A1002 O HOH A1139 1555 1555 2.12
LINK ZN ZN A1003 OXT ACT A1009 1555 1555 2.01
LINK ZN ZN A1003 O HOH A1106 1555 2645 2.08
LINK ZN ZN A1004 O HOH A1103 1555 2646 1.99
LINK ZN ZN A1004 O HOH A1132 1555 1555 2.14
LINK ZN ZN A1005 O HOH A1213 1555 1555 2.37
LINK ZN ZN A1005 O HOH A1238 1555 1555 2.20
LINK ZN ZN A1005 O HOH A1272 1555 1555 2.62
LINK ZN ZN A1006 OXT ACT A1010 1555 1555 2.04
LINK ZN ZN A1006 O HOH A1136 1555 1555 2.28
LINK ZN ZN A1006 O HOH A1263 1555 1555 2.30
LINK ZN ZN A1008 O HOH A1113 1555 1555 2.59
CISPEP 1 TYR A 276 PRO A 277 0 -6.91
SITE 1 AC1 13 SER A 65 GLN A 121 TYR A 151 ASN A 153
SITE 2 AC1 13 TYR A 223 ILE A 292 LYS A 312 THR A 313
SITE 3 AC1 13 GLY A 314 SER A 315 ILE A 343 HOH A1172
SITE 4 AC1 13 HOH A1214
SITE 1 AC2 3 HIS A 24 ACT A1011 HOH A1139
SITE 1 AC3 2 GLU A 130 ACT A1009
SITE 1 AC4 2 GLU A 207 HOH A1132
SITE 1 AC5 4 HIS A 259 HOH A1213 HOH A1238 HOH A1272
SITE 1 AC6 4 HIS A 161 ACT A1010 HOH A1136 HOH A1263
SITE 1 AC7 2 GLU A 50 HIS A 148
SITE 1 AC8 2 ASP A 244 HOH A1113
SITE 1 AC9 4 GLU A 130 ARG A 133 ZN A1003 HOH A1114
SITE 1 AD1 6 HIS A 93 TRP A 96 ARG A 133 HIS A 161
SITE 2 AD1 6 SER A 165 ZN A1006
SITE 1 AD2 2 GLU A 23 ZN A1002
CRYST1 49.540 59.250 62.480 90.00 102.72 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020186 0.000000 0.004556 0.00000
SCALE2 0.000000 0.016878 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016408 0.00000