HEADER CHAPERONE 03-SEP-14 4WBJ TITLE CRYSTAL STRUCTURE OF BRADYRHIZOBIUM JAPONICUM SCOI IN THE OXIDIZED TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLR1131 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SCOIOX; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRADYRHIZOBIUM DIAZOEFFICIENS; SOURCE 3 ORGANISM_TAXID: 224911; SOURCE 4 STRAIN: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110; SOURCE 5 GENE: BLR1131; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A-SCOIK34 KEYWDS COPPER, CHAPERONE, CYTOCHROME OXIDASE, CUA EXPDTA X-RAY DIFFRACTION AUTHOR N.QUADE,H.K.ABICHT,H.HENNECKE,R.GLOCKSHUBER REVDAT 2 10-JAN-24 4WBJ 1 REMARK REVDAT 1 23-SEP-15 4WBJ 0 JRNL AUTH N.QUADE,H.K.ABICHT,H.HENNECKE,R.GLOCKSHUBER JRNL TITL CRYSTAL STRUCTURE OF BRADYRHIZOBIUM JAPONICUM SCOI IN THE JRNL TITL 2 OXIDIZED STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 65098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.106 REMARK 3 R VALUE (WORKING SET) : 0.104 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3255 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.1050 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.1710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.042 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.126 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2622 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2502 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3575 ; 2.051 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5830 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 346 ; 6.352 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;32.958 ;23.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;12.060 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2952 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 1.913 ; 0.902 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1291 ; 1.913 ; 0.902 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1620 ; 2.508 ; 1.363 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5124 ; 5.687 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 84 ;31.522 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5457 ;12.039 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65098 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.15100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TXO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG, 25% PEG15000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.31450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 LYS A 34 REMARK 465 VAL A 35 REMARK 465 ALA A 36 REMARK 465 GLN A 37 REMARK 465 PRO A 38 REMARK 465 ALA A 39 REMARK 465 MET B 33 REMARK 465 LYS B 34 REMARK 465 VAL B 35 REMARK 465 ALA B 36 REMARK 465 GLN B 37 REMARK 465 PRO B 38 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 431 O HOH A 550 0.30 REMARK 500 O HOH B 303 O HOH B 328 0.53 REMARK 500 O HOH B 417 O HOH B 534 0.53 REMARK 500 O HOH A 315 O HOH A 339 0.87 REMARK 500 O HOH B 423 O HOH B 531 0.87 REMARK 500 O HOH A 344 O HOH A 551 0.93 REMARK 500 O HOH A 314 O HOH A 329 0.96 REMARK 500 O HOH A 321 O HOH A 356 0.99 REMARK 500 O HOH A 447 O HOH A 552 1.16 REMARK 500 O HOH B 419 O HOH B 535 1.29 REMARK 500 O HOH A 368 O HOH A 369 1.36 REMARK 500 O HOH A 327 O HOH A 351 1.37 REMARK 500 O HOH B 426 O HOH B 530 1.39 REMARK 500 O HOH B 331 O HOH B 359 1.40 REMARK 500 O HOH B 307 O HOH B 373 1.46 REMARK 500 O HOH B 306 O HOH B 339 1.59 REMARK 500 O HOH A 345 O HOH A 385 1.60 REMARK 500 O HOH A 351 O HOH B 342 1.65 REMARK 500 O HOH B 336 O HOH B 383 1.69 REMARK 500 O HOH B 483 O HOH B 533 1.69 REMARK 500 O HOH B 363 O HOH B 380 1.74 REMARK 500 NH2 ARG A 90 O HOH A 486 1.81 REMARK 500 OD2 ASP A 161 O HOH A 301 1.86 REMARK 500 O HOH A 321 O HOH A 401 1.87 REMARK 500 O HOH A 492 O HOH A 501 1.90 REMARK 500 O HOH A 481 O HOH A 548 1.94 REMARK 500 O HOH B 470 O HOH B 480 1.95 REMARK 500 OD2 ASP A 133 O HOH A 531 1.96 REMARK 500 O HOH A 313 O HOH A 341 1.97 REMARK 500 O HOH A 310 O HOH A 353 1.99 REMARK 500 CD LYS A 149 O HOH A 372 2.00 REMARK 500 OD1 ASP A 133 O HOH A 302 2.01 REMARK 500 O HOH B 388 O HOH B 414 2.02 REMARK 500 O HOH A 347 O HOH A 385 2.07 REMARK 500 O HOH A 302 O HOH A 338 2.08 REMARK 500 O HOH B 452 O HOH B 532 2.10 REMARK 500 O HOH B 499 O HOH B 533 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 358 O HOH B 359 1554 1.54 REMARK 500 N ALA A 40 O HOH B 316 1554 1.82 REMARK 500 O HOH B 414 O HOH B 463 1655 1.93 REMARK 500 OE2 GLU A 109 O HOH A 395 1455 1.96 REMARK 500 O HOH A 318 O HOH B 379 2455 1.96 REMARK 500 NH2 ARG A 194 O HOH A 317 1655 2.03 REMARK 500 O HOH A 362 O HOH B 383 2555 2.05 REMARK 500 OD1 ASP A 161 NH2 ARG B 90 1554 2.14 REMARK 500 NE ARG A 194 O HOH A 325 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 95 CG ASP B 95 OD1 0.160 REMARK 500 ASP B 95 CG ASP B 95 OD2 0.205 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 145 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 90 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 95 OD1 - CG - OD2 ANGL. DEV. = 12.2 DEGREES REMARK 500 ASP B 95 CB - CG - OD2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 191 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 74 77.66 -116.81 REMARK 500 ASP A 76 -77.55 83.23 REMARK 500 THR A 153 -96.58 -110.64 REMARK 500 CYS B 74 76.92 -112.83 REMARK 500 ASP B 76 -77.68 81.11 REMARK 500 THR B 153 -92.96 -112.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 543 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN B 201 DBREF 4WBJ A 34 196 UNP Q89VB6 Q89VB6_BRADU 34 196 DBREF 4WBJ B 34 196 UNP Q89VB6 Q89VB6_BRADU 34 196 SEQADV 4WBJ MET A 33 UNP Q89VB6 INITIATING METHIONINE SEQADV 4WBJ MET B 33 UNP Q89VB6 INITIATING METHIONINE SEQRES 1 A 164 MET LYS VAL ALA GLN PRO ALA ALA ILE GLY GLY PRO PHE SEQRES 2 A 164 GLN LEU THR ASP GLN ASN GLY LYS ALA VAL THR ASP LYS SEQRES 3 A 164 SER LEU LYS GLY LYS PRO THR LEU ILE PHE PHE GLY TYR SEQRES 4 A 164 THR HIS CYS PRO ASP VAL CYS PRO THR SER LEU PHE GLU SEQRES 5 A 164 ILE SER GLU VAL LEU ARG ALA MET GLY LYS ASP ALA ASP SEQRES 6 A 164 LYS VAL ASN ALA ILE PHE ILE SER VAL ASP PRO GLU ARG SEQRES 7 A 164 ASP THR PRO ALA THR MET LYS ASN TYR LEU SER SER PHE SEQRES 8 A 164 ASP PRO HIS LEU GLU GLY LEU SER GLY ASP PRO ALA GLU SEQRES 9 A 164 ILE ALA LYS VAL ILE THR SER TYR ARG VAL TYR ALA LYS SEQRES 10 A 164 LYS VAL PRO THR LYS ASP GLY ASP TYR THR MET ASP HIS SEQRES 11 A 164 THR ALA LEU ILE TYR LEU MET ASP ARG ASP GLY ARG PHE SEQRES 12 A 164 VAL SER PRO PHE ASN LEU LYS ARG THR PRO GLU GLU ALA SEQRES 13 A 164 ALA ALA ASP LEU LYS ARG TYR LEU SEQRES 1 B 164 MET LYS VAL ALA GLN PRO ALA ALA ILE GLY GLY PRO PHE SEQRES 2 B 164 GLN LEU THR ASP GLN ASN GLY LYS ALA VAL THR ASP LYS SEQRES 3 B 164 SER LEU LYS GLY LYS PRO THR LEU ILE PHE PHE GLY TYR SEQRES 4 B 164 THR HIS CYS PRO ASP VAL CYS PRO THR SER LEU PHE GLU SEQRES 5 B 164 ILE SER GLU VAL LEU ARG ALA MET GLY LYS ASP ALA ASP SEQRES 6 B 164 LYS VAL ASN ALA ILE PHE ILE SER VAL ASP PRO GLU ARG SEQRES 7 B 164 ASP THR PRO ALA THR MET LYS ASN TYR LEU SER SER PHE SEQRES 8 B 164 ASP PRO HIS LEU GLU GLY LEU SER GLY ASP PRO ALA GLU SEQRES 9 B 164 ILE ALA LYS VAL ILE THR SER TYR ARG VAL TYR ALA LYS SEQRES 10 B 164 LYS VAL PRO THR LYS ASP GLY ASP TYR THR MET ASP HIS SEQRES 11 B 164 THR ALA LEU ILE TYR LEU MET ASP ARG ASP GLY ARG PHE SEQRES 12 B 164 VAL SER PRO PHE ASN LEU LYS ARG THR PRO GLU GLU ALA SEQRES 13 B 164 ALA ALA ASP LEU LYS ARG TYR LEU HET SIN A 201 8 HET SIN B 201 8 HETNAM SIN SUCCINIC ACID FORMUL 3 SIN 2(C4 H6 O4) FORMUL 5 HOH *490(H2 O) HELIX 1 AA1 ASP A 76 MET A 92 1 17 HELIX 2 AA2 GLY A 93 VAL A 99 5 7 HELIX 3 AA3 THR A 112 SER A 121 1 10 HELIX 4 AA4 ASP A 133 TYR A 144 1 12 HELIX 5 AA5 THR A 184 ARG A 194 1 11 HELIX 6 AA6 ASP B 76 MET B 92 1 17 HELIX 7 AA7 GLY B 93 VAL B 99 5 7 HELIX 8 AA8 THR B 112 SER B 121 1 10 HELIX 9 AA9 ASP B 133 TYR B 144 1 12 HELIX 10 AB1 THR B 184 ARG B 194 1 11 SHEET 1 AA1 2 GLN A 46 THR A 48 0 SHEET 2 AA1 2 ALA A 54 THR A 56 -1 O VAL A 55 N LEU A 47 SHEET 1 AA2 5 GLU A 128 LEU A 130 0 SHEET 2 AA2 5 ASN A 100 SER A 105 1 N PHE A 103 O GLU A 128 SHEET 3 AA2 5 THR A 65 GLY A 70 1 N LEU A 66 O ILE A 102 SHEET 4 AA2 5 TYR A 167 MET A 169 -1 O TYR A 167 N ILE A 67 SHEET 5 AA2 5 PHE A 175 PRO A 178 -1 O VAL A 176 N LEU A 168 SHEET 1 AA3 2 ALA A 148 PRO A 152 0 SHEET 2 AA3 2 TYR A 158 HIS A 162 -1 O THR A 159 N VAL A 151 SHEET 1 AA4 2 GLN B 46 THR B 48 0 SHEET 2 AA4 2 ALA B 54 THR B 56 -1 O VAL B 55 N LEU B 47 SHEET 1 AA5 5 GLU B 128 LEU B 130 0 SHEET 2 AA5 5 ASN B 100 SER B 105 1 N PHE B 103 O GLU B 128 SHEET 3 AA5 5 THR B 65 GLY B 70 1 N LEU B 66 O ILE B 102 SHEET 4 AA5 5 TYR B 167 MET B 169 -1 O TYR B 167 N ILE B 67 SHEET 5 AA5 5 PHE B 175 PRO B 178 -1 O VAL B 176 N LEU B 168 SHEET 1 AA6 2 ALA B 148 PRO B 152 0 SHEET 2 AA6 2 TYR B 158 HIS B 162 -1 O THR B 159 N VAL B 151 SSBOND 1 CYS A 74 CYS A 78 1555 1555 2.00 SSBOND 2 CYS B 74 CYS B 78 1555 1555 2.01 SITE 1 AC1 8 SER A 86 GLU A 87 ARG A 90 ASP A 124 SITE 2 AC1 8 HOH A 456 THR B 163 ALA B 164 LEU B 165 SITE 1 AC2 8 THR A 163 ALA A 164 LEU A 165 SER B 86 SITE 2 AC2 8 GLU B 87 ARG B 90 ASP B 124 HOH B 450 CRYST1 38.776 82.629 45.853 90.00 90.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025789 0.000000 0.000015 0.00000 SCALE2 0.000000 0.012102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021809 0.00000