HEADER HYDROLASE 05-SEP-14 4WCV TITLE HALOALKANE DEHALOGENASE DHAA MUTANT FROM RHODOCOCCUS RHODOCHROUS TITLE 2 (T148L+G171Q+A172V+C176G) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOALKANE DEHALOGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.8.1.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS RHODOCHROUS; SOURCE 3 ORGANISM_TAXID: 1829; SOURCE 4 GENE: DHAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAQN KEYWDS HYDROLASE, MUTATION IN TUNNEL ACCESS EXPDTA X-RAY DIFFRACTION AUTHOR T.HOLUBEVA,T.PRUDNIKOVA,I.KUTA-SMATANOVA,P.REZACOVA REVDAT 3 10-JAN-24 4WCV 1 REMARK REVDAT 2 04-FEB-15 4WCV 1 JRNL REVDAT 1 15-OCT-14 4WCV 0 JRNL AUTH V.LISKOVA,D.BEDNAR,T.PRUDNIKOVA,P.REZACOVA,T.KOUDELAKOVA, JRNL AUTH 2 E.SEBESTOVA,I.KUTA-SMATANOVA,J.BREZOVSKY,R.CHALOUPKOVA, JRNL AUTH 3 J.DAMBORSKY JRNL TITL BALANCING THE STABILITY-ACTIVITY TRADE-OFF BY FINE-TUNING JRNL TITL 2 DEHALOGENASE ACCESS TUNNELS JRNL REF CHEMCATCHEM 2015 JRNL REFN ESSN 1867-3899 JRNL DOI 10.1002/CCTC.201402792 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 26995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.123 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.73 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1882 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1140 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.1850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2557 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3510 ; 1.846 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;30.920 ;23.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 386 ;12.812 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2061 ; 0.013 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1210 ; 1.103 ; 0.695 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1520 ; 1.408 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1347 ; 2.244 ; 0.798 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4567 ; 3.449 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2531 ; 4.112 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2436 ;10.696 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0760 1.4900 -6.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0049 REMARK 3 T33: 0.0088 T12: -0.0075 REMARK 3 T13: -0.0107 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.0941 L22: 0.0728 REMARK 3 L33: 0.0877 L12: -0.0263 REMARK 3 L13: -0.0414 L23: 0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.0065 S13: -0.0028 REMARK 3 S21: -0.0024 S22: -0.0038 S23: 0.0099 REMARK 3 S31: -0.0005 S32: -0.0077 S33: 0.0013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5120 -8.9670 14.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.0178 REMARK 3 T33: 0.0130 T12: -0.0077 REMARK 3 T13: 0.0056 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.2545 L22: 0.5393 REMARK 3 L33: 0.4698 L12: 0.3681 REMARK 3 L13: 0.3436 L23: 0.4913 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: 0.0105 S13: -0.0039 REMARK 3 S21: -0.0517 S22: 0.0252 S23: -0.0091 REMARK 3 S31: -0.0276 S32: 0.0102 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3500 -0.4640 20.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.0174 REMARK 3 T33: 0.0106 T12: -0.0032 REMARK 3 T13: -0.0097 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.2300 L22: 0.5915 REMARK 3 L33: 0.2655 L12: -0.3543 REMARK 3 L13: -0.2384 L23: 0.3545 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0132 S13: -0.0022 REMARK 3 S21: 0.0269 S22: 0.0072 S23: 0.0078 REMARK 3 S31: 0.0085 S32: 0.0087 S33: 0.0077 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -5.2890 9.0380 18.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.0179 T22: 0.0079 REMARK 3 T33: 0.0070 T12: -0.0050 REMARK 3 T13: -0.0064 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.8467 L22: 0.1587 REMARK 3 L33: 0.2509 L12: -0.3209 REMARK 3 L13: -0.4356 L23: 0.1336 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0330 S13: 0.0231 REMARK 3 S21: 0.0035 S22: 0.0105 S23: -0.0195 REMARK 3 S31: -0.0011 S32: 0.0173 S33: -0.0042 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2970 11.6440 7.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.0175 T22: 0.0089 REMARK 3 T33: 0.0163 T12: -0.0101 REMARK 3 T13: -0.0121 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.3429 L22: 0.1439 REMARK 3 L33: 0.1033 L12: -0.1738 REMARK 3 L13: -0.0734 L23: 0.1066 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0159 S13: 0.0154 REMARK 3 S21: 0.0029 S22: 0.0106 S23: -0.0113 REMARK 3 S31: -0.0042 S32: 0.0087 S33: -0.0037 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 186 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2980 15.6270 5.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.0195 T22: 0.0094 REMARK 3 T33: 0.0100 T12: -0.0041 REMARK 3 T13: -0.0098 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.4548 L22: 0.6742 REMARK 3 L33: 0.5109 L12: 0.0982 REMARK 3 L13: -0.4538 L23: -0.0386 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.0245 S13: 0.0314 REMARK 3 S21: 0.0091 S22: 0.0082 S23: 0.0147 REMARK 3 S31: -0.0104 S32: -0.0065 S33: -0.0237 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 230 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7930 -7.6330 7.7960 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.0068 REMARK 3 T33: 0.0123 T12: -0.0074 REMARK 3 T13: -0.0099 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.0590 L22: 0.2971 REMARK 3 L33: 0.0915 L12: -0.0146 REMARK 3 L13: -0.0473 L23: 0.0486 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.0034 S13: -0.0120 REMARK 3 S21: 0.0065 S22: -0.0081 S23: 0.0181 REMARK 3 S31: 0.0056 S32: -0.0021 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4000 -11.1430 -1.9720 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0175 REMARK 3 T33: 0.0126 T12: 0.0010 REMARK 3 T13: -0.0079 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.0117 L22: 0.3266 REMARK 3 L33: 0.1324 L12: 0.0471 REMARK 3 L13: 0.0132 L23: 0.1181 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: -0.0065 S13: -0.0026 REMARK 3 S21: 0.0150 S22: 0.0070 S23: -0.0061 REMARK 3 S31: 0.0227 S32: 0.0092 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2010 -0.5740 -7.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.0167 T22: 0.0049 REMARK 3 T33: 0.0117 T12: -0.0060 REMARK 3 T13: -0.0094 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1278 L22: 0.0874 REMARK 3 L33: 0.2371 L12: 0.0108 REMARK 3 L13: -0.0120 L23: 0.1034 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.0047 S13: -0.0060 REMARK 3 S21: -0.0077 S22: 0.0028 S23: -0.0151 REMARK 3 S31: -0.0037 S32: 0.0081 S33: -0.0081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4WCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000202749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 39.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3G9X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE TRIHYDRATE, AMMONIUM REMARK 280 ACETATE, PEG 4000, PH 4.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1008 O HOH A 1020 1.92 REMARK 500 O HOH A 701 O HOH A 1008 1.98 REMARK 500 OE2 GLU A 183 O HOH A 601 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 653 O HOH A 665 1565 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 42 51.00 -107.80 REMARK 500 THR A 43 -158.68 -105.26 REMARK 500 GLU A 98 -92.24 -107.96 REMARK 500 GLU A 98 -88.28 -111.07 REMARK 500 ASP A 106 -130.44 50.16 REMARK 500 ARG A 153 46.14 -91.23 REMARK 500 ASP A 156 -71.73 -102.85 REMARK 500 GLN A 171 -63.95 -107.22 REMARK 500 VAL A 245 -77.22 -134.67 REMARK 500 LEU A 271 -92.65 -120.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 875 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 938 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1041 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A1052 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1053 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1056 DISTANCE = 7.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F5Z RELATED DB: PDB REMARK 900 4F5Z CONTAINS L95V, A172V MUTATIONS IN ACCESS TUNNEL REMARK 900 RELATED ID: 4F60 RELATED DB: PDB REMARK 900 4F60 CONTAINS T148L, G171Q, A172V, C176F MUTATIOSN IN ACCESS TUNNEL DBREF 4WCV A 1 293 UNP P0A3G3 DHAA_RHOSO 1 293 SEQADV 4WCV LEU A 148 UNP P0A3G3 THR 148 ENGINEERED MUTATION SEQADV 4WCV GLN A 171 UNP P0A3G3 GLY 171 ENGINEERED MUTATION SEQADV 4WCV VAL A 172 UNP P0A3G3 ALA 172 ENGINEERED MUTATION SEQADV 4WCV GLY A 176 UNP P0A3G3 CYS 176 ENGINEERED MUTATION SEQADV 4WCV HIS A 294 UNP P0A3G3 EXPRESSION TAG SEQADV 4WCV HIS A 295 UNP P0A3G3 EXPRESSION TAG SEQADV 4WCV HIS A 296 UNP P0A3G3 EXPRESSION TAG SEQADV 4WCV HIS A 297 UNP P0A3G3 EXPRESSION TAG SEQADV 4WCV HIS A 298 UNP P0A3G3 EXPRESSION TAG SEQADV 4WCV HIS A 299 UNP P0A3G3 EXPRESSION TAG SEQRES 1 A 299 MET SER GLU ILE GLY THR GLY PHE PRO PHE ASP PRO HIS SEQRES 2 A 299 TYR VAL GLU VAL LEU GLY GLU ARG MET HIS TYR VAL ASP SEQRES 3 A 299 VAL GLY PRO ARG ASP GLY THR PRO VAL LEU PHE LEU HIS SEQRES 4 A 299 GLY ASN PRO THR SER SER TYR LEU TRP ARG ASN ILE ILE SEQRES 5 A 299 PRO HIS VAL ALA PRO SER HIS ARG CYS ILE ALA PRO ASP SEQRES 6 A 299 LEU ILE GLY MET GLY LYS SER ASP LYS PRO ASP LEU ASP SEQRES 7 A 299 TYR PHE PHE ASP ASP HIS VAL ARG TYR LEU ASP ALA PHE SEQRES 8 A 299 ILE GLU ALA LEU GLY LEU GLU GLU VAL VAL LEU VAL ILE SEQRES 9 A 299 HIS ASP TRP GLY SER ALA LEU GLY PHE HIS TRP ALA LYS SEQRES 10 A 299 ARG ASN PRO GLU ARG VAL LYS GLY ILE ALA CYS MET GLU SEQRES 11 A 299 PHE ILE ARG PRO ILE PRO THR TRP ASP GLU TRP PRO GLU SEQRES 12 A 299 PHE ALA ARG GLU LEU PHE GLN ALA PHE ARG THR ALA ASP SEQRES 13 A 299 VAL GLY ARG GLU LEU ILE ILE ASP GLN ASN ALA PHE ILE SEQRES 14 A 299 GLU GLN VAL LEU PRO LYS GLY VAL VAL ARG PRO LEU THR SEQRES 15 A 299 GLU VAL GLU MET ASP HIS TYR ARG GLU PRO PHE LEU LYS SEQRES 16 A 299 PRO VAL ASP ARG GLU PRO LEU TRP ARG PHE PRO ASN GLU SEQRES 17 A 299 LEU PRO ILE ALA GLY GLU PRO ALA ASN ILE VAL ALA LEU SEQRES 18 A 299 VAL GLU ALA TYR MET ASN TRP LEU HIS GLN SER PRO VAL SEQRES 19 A 299 PRO LYS LEU LEU PHE TRP GLY THR PRO GLY VAL LEU ILE SEQRES 20 A 299 PRO PRO ALA GLU ALA ALA ARG LEU ALA GLU SER LEU PRO SEQRES 21 A 299 ASN CYS LYS THR VAL ASP ILE GLY PRO GLY LEU HIS TYR SEQRES 22 A 299 LEU GLN GLU ASP ASN PRO ASP LEU ILE GLY SER GLU ILE SEQRES 23 A 299 ALA ARG TRP LEU PRO ALA LEU HIS HIS HIS HIS HIS HIS HET CL A 501 1 HET PGE A 502 10 HET ACT A 503 4 HET ACT A 504 4 HETNAM CL CHLORIDE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM ACT ACETATE ION FORMUL 2 CL CL 1- FORMUL 3 PGE C6 H14 O4 FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 HOH *477(H2 O) HELIX 1 AA1 SER A 44 ARG A 49 5 6 HELIX 2 AA2 ILE A 51 ALA A 56 1 6 HELIX 3 AA3 PHE A 80 LEU A 95 1 16 HELIX 4 AA4 ASP A 106 ASN A 119 1 14 HELIX 5 AA5 THR A 137 TRP A 141 5 5 HELIX 6 AA6 PRO A 142 PHE A 144 5 3 HELIX 7 AA7 ALA A 145 ARG A 153 1 9 HELIX 8 AA8 ASP A 156 ILE A 163 1 8 HELIX 9 AA9 ASN A 166 GLN A 171 1 6 HELIX 10 AB1 GLN A 171 GLY A 176 1 6 HELIX 11 AB2 THR A 182 GLU A 191 1 10 HELIX 12 AB3 PRO A 192 LEU A 194 5 3 HELIX 13 AB4 LYS A 195 ASP A 198 5 4 HELIX 14 AB5 ARG A 199 LEU A 209 1 11 HELIX 15 AB6 PRO A 215 SER A 232 1 18 HELIX 16 AB7 PRO A 248 LEU A 259 1 12 HELIX 17 AB8 TYR A 273 ASN A 278 1 6 HELIX 18 AB9 ASN A 278 LEU A 290 1 13 HELIX 19 AC1 PRO A 291 HIS A 294 5 4 SHEET 1 AA1 8 HIS A 13 VAL A 17 0 SHEET 2 AA1 8 GLU A 20 VAL A 27 -1 O MET A 22 N VAL A 15 SHEET 3 AA1 8 CYS A 61 PRO A 64 -1 O CYS A 61 N VAL A 27 SHEET 4 AA1 8 VAL A 35 LEU A 38 1 N PHE A 37 O ILE A 62 SHEET 5 AA1 8 VAL A 100 HIS A 105 1 O VAL A 101 N LEU A 36 SHEET 6 AA1 8 VAL A 123 MET A 129 1 O ALA A 127 N LEU A 102 SHEET 7 AA1 8 LYS A 236 PRO A 243 1 O LEU A 237 N CYS A 128 SHEET 8 AA1 8 CYS A 262 GLY A 270 1 O LYS A 263 N LEU A 238 CISPEP 1 ASN A 41 PRO A 42 0 -3.19 CISPEP 2 GLU A 214 PRO A 215 0 -2.86 CISPEP 3 GLU A 214 PRO A 215 0 -7.75 CISPEP 4 THR A 242 PRO A 243 0 5.00 SITE 1 AC1 5 ASN A 41 TRP A 107 PRO A 206 PGE A 502 SITE 2 AC1 5 HOH A1076 SITE 1 AC2 6 ASP A 106 PHE A 144 PHE A 168 LYS A 175 SITE 2 AC2 6 CL A 501 HOH A1076 SITE 1 AC3 8 PRO A 12 GLN A 231 PRO A 233 PRO A 260 SITE 2 AC3 8 HOH A 603 HOH A 628 HOH A 663 HOH A 689 SITE 1 AC4 7 THR A 33 HIS A 59 LYS A 124 LEU A 290 SITE 2 AC4 7 HIS A 294 HOH A 823 HOH A 982 CRYST1 42.585 44.477 46.508 115.47 98.79 109.12 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023482 0.008142 0.009113 0.00000 SCALE2 0.000000 0.023797 0.014263 0.00000 SCALE3 0.000000 0.000000 0.025366 0.00000