HEADER TRANSFERASE 06-SEP-14 4WD2 TITLE CRYSTAL STRUCTURE OF AN AROMATIC AMINO ACID AMINOTRANSFERASE FROM TITLE 2 BURKHOLDERIA CENOCEPACIA J2315 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC-AMINO-ACID TRANSAMINASE TYRB; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.57; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA K56-2VALVANO; SOURCE 3 ORGANISM_TAXID: 985076; SOURCE 4 ATCC: BAA-245; SOURCE 5 GENE: TYRB, BURCENK562V_C3553; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 15-NOV-23 4WD2 1 DBREF REVDAT 3 27-SEP-23 4WD2 1 REMARK REVDAT 2 22-NOV-17 4WD2 1 COMPND SOURCE REMARK HETNAM REVDAT 2 2 1 FORMUL REVDAT 1 08-OCT-14 4WD2 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF AN AROMATIC AMINO ACID AMINOTRANSFERASE JRNL TITL 2 FROM BURKHOLDERIA CENOCEPACIA J2315 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1779) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5716 - 4.3349 0.95 2701 141 0.1160 0.1417 REMARK 3 2 4.3349 - 3.4421 0.95 2592 136 0.1008 0.1271 REMARK 3 3 3.4421 - 3.0074 0.95 2586 139 0.1114 0.1561 REMARK 3 4 3.0074 - 2.7326 0.95 2580 134 0.1127 0.1506 REMARK 3 5 2.7326 - 2.5368 0.95 2561 141 0.1155 0.1604 REMARK 3 6 2.5368 - 2.3873 0.95 2549 136 0.1178 0.1530 REMARK 3 7 2.3873 - 2.2678 0.95 2535 131 0.1175 0.1289 REMARK 3 8 2.2678 - 2.1691 0.95 2567 137 0.1209 0.1657 REMARK 3 9 2.1691 - 2.0856 0.95 2563 135 0.1281 0.1814 REMARK 3 10 2.0856 - 2.0137 0.93 2498 129 0.1384 0.1912 REMARK 3 11 2.0137 - 1.9507 0.87 2323 126 0.1487 0.1793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.2700 REMARK 3 OPERATOR: K,H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3124 REMARK 3 ANGLE : 0.893 4245 REMARK 3 CHIRALITY : 0.035 468 REMARK 3 PLANARITY : 0.003 556 REMARK 3 DIHEDRAL : 12.602 1122 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4076 22.8447 97.8074 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.1974 REMARK 3 T33: 0.1614 T12: 0.0186 REMARK 3 T13: 0.0128 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.0053 L22: -0.0004 REMARK 3 L33: 0.0265 L12: -0.0014 REMARK 3 L13: 0.0174 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0593 S13: 0.1203 REMARK 3 S21: 0.0467 S22: -0.0856 S23: 0.0007 REMARK 3 S31: -0.0885 S32: -0.1078 S33: 0.1029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6792 -4.6276 93.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1295 REMARK 3 T33: 0.1305 T12: 0.0191 REMARK 3 T13: 0.0369 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.6166 L22: 0.6427 REMARK 3 L33: 0.7927 L12: -0.5594 REMARK 3 L13: 1.0878 L23: -0.3289 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.0331 S13: -0.1406 REMARK 3 S21: 0.1050 S22: 0.0574 S23: 0.1415 REMARK 3 S31: 0.0062 S32: -0.1319 S33: -0.0953 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5922 6.5068 83.4621 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0833 REMARK 3 T33: 0.0841 T12: 0.0148 REMARK 3 T13: 0.0059 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.4403 L22: 0.8994 REMARK 3 L33: 1.0289 L12: 0.2752 REMARK 3 L13: -0.0716 L23: -0.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.0046 S13: 0.0494 REMARK 3 S21: 0.0685 S22: 0.0264 S23: -0.0244 REMARK 3 S31: -0.1234 S32: 0.0627 S33: -0.0500 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 179 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2917 0.5604 81.0743 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.0528 REMARK 3 T33: 0.0821 T12: 0.0122 REMARK 3 T13: -0.0023 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.2999 L22: 0.2200 REMARK 3 L33: 0.7214 L12: 0.0302 REMARK 3 L13: 0.0832 L23: -0.1148 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0070 S13: -0.0071 REMARK 3 S21: 0.0098 S22: 0.0063 S23: -0.0014 REMARK 3 S31: 0.0114 S32: -0.0019 S33: -0.0030 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 363 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6645 23.0901 75.9999 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.1188 REMARK 3 T33: 0.1213 T12: 0.0433 REMARK 3 T13: -0.0086 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 1.2150 L22: 2.9840 REMARK 3 L33: 1.5610 L12: -0.1953 REMARK 3 L13: -0.2358 L23: 0.6382 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.0618 S13: 0.0157 REMARK 3 S21: -0.1789 S22: -0.0163 S23: -0.0971 REMARK 3 S31: -0.1652 S32: -0.1327 S33: -0.0244 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 364 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8327 23.4913 78.6316 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1108 REMARK 3 T33: 0.1134 T12: 0.0466 REMARK 3 T13: 0.0015 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0763 L22: 0.9035 REMARK 3 L33: 0.8384 L12: -0.4568 REMARK 3 L13: 0.4236 L23: 0.1480 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0222 S13: 0.0931 REMARK 3 S21: -0.0606 S22: -0.0518 S23: 0.0182 REMARK 3 S31: -0.1323 S32: -0.0453 S33: 0.0403 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.860 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.720 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: PDB ENTRY 3TAT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKU REAGENTS JCSG+ SCREEN D1: 24% REMARK 280 PEG 1500, 20% GLYCEROL; BUCEA.01471.A.B1.PS01824 AT 20 MG/ML + REMARK 280 2.5MM PYRIDOXAL PHOSPHATE; DI RECT CRYO; TRAY 257500 D1, PUCK REMARK 280 ZBA1-4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.75667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.51333 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 133.51333 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.75667 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER GENERATED FROM THE MONOMER REMARK 300 IN THE ASYMMETRIC UNIT BY THE CRYSTALLOGRAPHIC OPERATIONS X,X-Y,-Z+1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 200.27000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 334 REMARK 465 GLY A 335 REMARK 465 GLU A 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 11 CG OD1 OD2 REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ASP A 26 CG OD1 OD2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 SER A 60 OG REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 333 CG1 CG2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 ARG A 371 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 601 O HOH A 696 2.14 REMARK 500 O HOH A 681 O HOH A 700 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 149 -75.45 -150.02 REMARK 500 ARG A 254 73.52 48.50 REMARK 500 ASN A 282 -81.48 -118.21 REMARK 500 SER A 284 -50.89 72.47 REMARK 500 HIS A 332 -146.71 -104.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUCEA.01471.A RELATED DB: TARGETTRACK DBREF 4WD2 A 1 400 UNP T0EWC0 T0EWC0_9BURK 1 400 SEQADV 4WD2 MET A -7 UNP T0EWC0 INITIATING METHIONINE SEQADV 4WD2 ALA A -6 UNP T0EWC0 EXPRESSION TAG SEQADV 4WD2 HIS A -5 UNP T0EWC0 EXPRESSION TAG SEQADV 4WD2 HIS A -4 UNP T0EWC0 EXPRESSION TAG SEQADV 4WD2 HIS A -3 UNP T0EWC0 EXPRESSION TAG SEQADV 4WD2 HIS A -2 UNP T0EWC0 EXPRESSION TAG SEQADV 4WD2 HIS A -1 UNP T0EWC0 EXPRESSION TAG SEQADV 4WD2 HIS A 0 UNP T0EWC0 EXPRESSION TAG SEQRES 1 A 408 MET ALA HIS HIS HIS HIS HIS HIS MET PHE GLU HIS ILE SEQRES 2 A 408 ASP ALA TYR PRO GLY ASP PRO ILE LEU THR LEU ASN GLU SEQRES 3 A 408 ASN PHE GLN LYS ASP PRO ARG ASP GLN LYS VAL ASN LEU SEQRES 4 A 408 SER ILE GLY ILE TYR PHE ASP ALA GLU GLY ARG ILE PRO SEQRES 5 A 408 VAL MET GLY ALA VAL ARG GLU ALA GLU THR ALA LEU GLN SEQRES 6 A 408 ARG ASP SER GLY PRO LYS PRO TYR LEU PRO MET VAL GLY SEQRES 7 A 408 LEU ALA ALA TYR ARG ASP ALA VAL GLN SER LEU VAL PHE SEQRES 8 A 408 GLY ALA ASP HIS PRO ALA ARG ALA ALA GLY ARG ILE ALA SEQRES 9 A 408 THR LEU GLN THR LEU GLY GLY SER GLY ALA LEU LYS VAL SEQRES 10 A 408 GLY ALA ASP PHE LEU LYS ARG TYR PHE PRO ASP SER GLN SEQRES 11 A 408 VAL TRP LEU SER ASP PRO SER TRP GLU ASN HIS ARG PHE SEQRES 12 A 408 ILE PHE GLU ARG ALA GLY PHE THR VAL ASN THR TYR PRO SEQRES 13 A 408 TYR TYR ASP GLU ALA THR GLY GLY LEU LYS PHE ASP ALA SEQRES 14 A 408 MET LEU ALA ALA ILE ASP ALA LEU PRO ALA ARG SER ILE SEQRES 15 A 408 VAL LEU LEU HIS ALA CYS CYS HIS ASN PRO THR GLY VAL SEQRES 16 A 408 ASP LEU ASP GLU GLY GLN TRP GLU LYS LEU ILE ASP VAL SEQRES 17 A 408 ILE GLU ALA ARG GLU LEU LEU PRO PHE VAL ASP MET ALA SEQRES 18 A 408 TYR GLN GLY PHE GLY ALA GLY LEU ASP ALA ASP ALA PHE SEQRES 19 A 408 ALA VAL ARG GLU LEU ALA ARG ARG GLY VAL PRO THR LEU SEQRES 20 A 408 VAL ALA ASN SER PHE SER LLP ASN PHE SER LEU TYR GLY SEQRES 21 A 408 GLU ARG VAL GLY GLY LEU SER VAL VAL CYS GLU ASP ALA SEQRES 22 A 408 ALA ALA ALA GLU ARG VAL LEU GLY GLN LEU ALA GLY ALA SEQRES 23 A 408 VAL ARG SER ASN TYR SER ASN PRO GLN THR TYR GLY ALA SEQRES 24 A 408 LYS VAL VAL ALA ALA VAL LEU GLY THR PRO ALA LEU ARG SEQRES 25 A 408 LYS GLN TRP GLU GLU GLU LEU SER ALA MET CYS ARG ARG SEQRES 26 A 408 ILE ALA ARG MET ARG GLN SER ILE HIS ASP GLY LEU ARG SEQRES 27 A 408 ASP HIS VAL SER GLY GLU ALA LEU THR ARG TYR VAL LYS SEQRES 28 A 408 GLN ARG GLY MET PHE THR TYR THR GLY LEU THR GLU SER SEQRES 29 A 408 GLN VAL ASP ALA LEU ARG GLU VAL HIS GLY VAL TYR ILE SEQRES 30 A 408 LEU ARG SER GLY ARG MET CYS VAL ALA GLY LEU ASN ASP SEQRES 31 A 408 SER ASN VAL GLY ILE VAL ALA ASP ALA ILE GLY LYS VAL SEQRES 32 A 408 LEU LYS SER GLY ALA MODRES 4WD2 LLP A 246 LYS MODIFIED RESIDUE HET LLP A 246 24 HET GOL A 500 6 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 HOH *396(H2 O) HELIX 1 AA1 ASP A 11 ASP A 23 1 13 HELIX 2 AA2 MET A 46 ARG A 58 1 13 HELIX 3 AA3 LEU A 71 GLY A 84 1 14 HELIX 4 AA4 HIS A 87 ALA A 92 1 6 HELIX 5 AA5 LEU A 101 PHE A 118 1 18 HELIX 6 AA6 ASN A 132 ALA A 140 1 9 HELIX 7 AA7 LYS A 158 ALA A 168 1 11 HELIX 8 AA8 ASP A 190 ARG A 204 1 15 HELIX 9 AA9 GLY A 220 ALA A 225 1 6 HELIX 10 AB1 ALA A 225 ARG A 234 1 10 HELIX 11 AB2 LEU A 250 ARG A 254 5 5 HELIX 12 AB3 ASP A 264 SER A 281 1 18 HELIX 13 AB4 THR A 288 THR A 300 1 13 HELIX 14 AB5 THR A 300 ASP A 331 1 32 HELIX 15 AB6 THR A 339 GLN A 344 1 6 HELIX 16 AB7 THR A 354 VAL A 364 1 11 HELIX 17 AB8 ALA A 378 LEU A 380 5 3 HELIX 18 AB9 ASN A 384 SER A 398 1 15 SHEET 1 AA1 2 VAL A 29 ASN A 30 0 SHEET 2 AA1 2 VAL A 367 TYR A 368 1 O TYR A 368 N VAL A 29 SHEET 1 AA2 7 ILE A 95 THR A 100 0 SHEET 2 AA2 7 GLY A 256 VAL A 261 -1 O VAL A 260 N ALA A 96 SHEET 3 AA2 7 THR A 238 SER A 243 -1 N VAL A 240 O SER A 259 SHEET 4 AA2 7 LEU A 207 MET A 212 1 N MET A 212 O ALA A 241 SHEET 5 AA2 7 ILE A 174 HIS A 178 1 N LEU A 177 O ASP A 211 SHEET 6 AA2 7 VAL A 123 ASP A 127 1 N TRP A 124 O ILE A 174 SHEET 7 AA2 7 VAL A 144 PRO A 148 1 O ASN A 145 N VAL A 123 SHEET 1 AA3 2 PHE A 348 TYR A 350 0 SHEET 2 AA3 2 ARG A 374 CYS A 376 -1 O MET A 375 N THR A 349 LINK C SER A 245 N LLP A 246 1555 1555 1.32 LINK C LLP A 246 N ASN A 247 1555 1555 1.33 CISPEP 1 ASP A 127 PRO A 128 0 -1.79 CISPEP 2 ASN A 183 PRO A 184 0 14.05 SITE 1 AC1 5 ASP A 26 GLN A 27 LYS A 28 VAL A 29 SITE 2 AC1 5 SER A 383 SITE 1 AC2 6 ASN A 30 ILE A 33 PHE A 37 GLY A 379 SITE 2 AC2 6 HOH A 763 HOH A 805 SITE 1 AC3 7 GLY A 93 GLU A 269 LEU A 272 GLU A 363 SITE 2 AC3 7 GOL A 503 HOH A 622 HOH A 740 SITE 1 AC4 10 ASP A 76 GLN A 79 ILE A 95 VAL A 364 SITE 2 AC4 10 GOL A 502 HOH A 611 HOH A 615 HOH A 739 SITE 3 AC4 10 HOH A 740 HOH A 849 CRYST1 59.220 59.220 200.270 90.00 90.00 120.00 P 31 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016886 0.009749 0.000000 0.00000 SCALE2 0.000000 0.019498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004993 0.00000