HEADER HYDROLASE 08-SEP-14 4WDB TITLE CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- TITLE 2 PHOSPHODIESTERASE, WITH MUTATION R307Q, COMPLEXED WITH 2'-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: CNPASE; COMPND 6 EC: 3.1.4.37; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CNP, CNP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS HYDROLASE, MYELIN, NERVOUS SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,A.RAASAKKA,P.KURSULA REVDAT 4 10-JAN-24 4WDB 1 REMARK REVDAT 3 07-MAR-18 4WDB 1 REMARK REVDAT 2 25-NOV-15 4WDB 1 JRNL REVDAT 1 23-SEP-15 4WDB 0 JRNL AUTH A.RAASAKKA,M.MYLLYKOSKI,S.LAULUMAA,M.LEHTIMAKI,M.HARTLEIN, JRNL AUTH 2 M.MOULIN,I.KURSULA,P.KURSULA JRNL TITL DETERMINANTS OF LIGAND BINDING AND CATALYTIC ACTIVITY IN THE JRNL TITL 2 MYELIN ENZYME 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE. JRNL REF SCI REP V. 5 16520 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26563764 JRNL DOI 10.1038/SREP16520 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7520 - 3.4458 1.00 2755 145 0.1580 0.1896 REMARK 3 2 3.4458 - 2.7353 1.00 2648 140 0.1556 0.1921 REMARK 3 3 2.7353 - 2.3897 1.00 2592 136 0.1484 0.1827 REMARK 3 4 2.3897 - 2.1712 1.00 2579 136 0.1461 0.2043 REMARK 3 5 2.1712 - 2.0156 1.00 2573 135 0.1529 0.1893 REMARK 3 6 2.0156 - 1.8968 1.00 2573 136 0.1778 0.2431 REMARK 3 7 1.8968 - 1.8018 1.00 2540 134 0.1952 0.2461 REMARK 3 8 1.8018 - 1.7234 1.00 2542 133 0.2255 0.2446 REMARK 3 9 1.7234 - 1.6570 1.00 2527 134 0.2609 0.2668 REMARK 3 10 1.6570 - 1.5998 1.00 2561 134 0.3303 0.3561 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1824 REMARK 3 ANGLE : 1.758 2478 REMARK 3 CHIRALITY : 0.080 265 REMARK 3 PLANARITY : 0.010 313 REMARK 3 DIHEDRAL : 20.307 690 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9068 15.1009 -29.9375 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.2467 REMARK 3 T33: 0.2576 T12: -0.0312 REMARK 3 T13: -0.0475 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.6246 L22: 2.5958 REMARK 3 L33: 2.7425 L12: 0.3781 REMARK 3 L13: 0.5017 L23: -0.3622 REMARK 3 S TENSOR REMARK 3 S11: -0.3696 S12: 0.5785 S13: 0.2497 REMARK 3 S21: -0.5586 S22: 0.1884 S23: 0.4017 REMARK 3 S31: -0.2466 S32: -0.1194 S33: 0.1946 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4411 10.1004 -14.6767 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.3263 REMARK 3 T33: 0.3736 T12: -0.0179 REMARK 3 T13: -0.0830 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.8436 L22: 6.1806 REMARK 3 L33: 3.5799 L12: -2.5546 REMARK 3 L13: 1.2370 L23: -3.1132 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.0293 S13: 0.2587 REMARK 3 S21: 0.1678 S22: -0.2839 S23: -0.7076 REMARK 3 S31: 0.0289 S32: 0.5064 S33: 0.1952 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4090 -7.7895 -6.8234 REMARK 3 T TENSOR REMARK 3 T11: 0.5697 T22: 0.4023 REMARK 3 T33: 0.4849 T12: 0.0632 REMARK 3 T13: -0.1395 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 2.6030 L22: 2.8755 REMARK 3 L33: 5.5179 L12: -1.6217 REMARK 3 L13: -1.3858 L23: -0.6356 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: -0.1278 S13: -0.5072 REMARK 3 S21: 0.1320 S22: 0.3083 S23: -0.0222 REMARK 3 S31: 1.3081 S32: 0.3976 S33: -0.2900 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 217 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2587 5.5495 -24.2236 REMARK 3 T TENSOR REMARK 3 T11: 0.2777 T22: 0.2489 REMARK 3 T33: 0.2328 T12: 0.0079 REMARK 3 T13: 0.0024 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.5781 L22: 1.7917 REMARK 3 L33: 1.1794 L12: -0.4135 REMARK 3 L13: 0.1383 L23: -1.2836 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.1195 S13: -0.0325 REMARK 3 S21: -0.0864 S22: -0.0480 S23: -0.0440 REMARK 3 S31: 0.2596 S32: 0.1967 S33: 0.0553 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8195 19.9927 -25.4427 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.2669 REMARK 3 T33: 0.3663 T12: 0.0705 REMARK 3 T13: -0.0363 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 5.1335 L22: 3.1543 REMARK 3 L33: 2.7090 L12: 0.1664 REMARK 3 L13: -0.7454 L23: -1.1874 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: -0.0580 S13: 0.0977 REMARK 3 S21: -0.1816 S22: 0.0460 S23: 0.6079 REMARK 3 S31: -0.3674 S32: -0.5674 S33: 0.0977 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.1104 9.4321 -12.1378 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.2472 REMARK 3 T33: 0.2145 T12: -0.0050 REMARK 3 T13: -0.0218 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.8887 L22: 1.3597 REMARK 3 L33: 1.1448 L12: -0.7074 REMARK 3 L13: 0.5087 L23: -0.8954 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: -0.1652 S13: 0.0255 REMARK 3 S21: 0.3068 S22: 0.0357 S23: 0.0451 REMARK 3 S31: 0.0101 S32: 0.0193 S33: -0.0527 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5289 13.1594 -15.1363 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.3092 REMARK 3 T33: 0.3007 T12: 0.0206 REMARK 3 T13: 0.0115 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 3.7188 L22: 3.6431 REMARK 3 L33: 4.3015 L12: 0.5075 REMARK 3 L13: 0.7012 L23: -1.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.0165 S13: -0.2178 REMARK 3 S21: 0.0628 S22: 0.0507 S23: 0.5568 REMARK 3 S31: 0.0622 S32: -0.5074 S33: -0.0814 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5552 3.0851 -15.2106 REMARK 3 T TENSOR REMARK 3 T11: 0.2720 T22: 0.2480 REMARK 3 T33: 0.3171 T12: -0.0348 REMARK 3 T13: 0.0295 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 1.9719 L22: 1.5372 REMARK 3 L33: 1.6383 L12: -1.7013 REMARK 3 L13: -0.0510 L23: 0.1685 REMARK 3 S TENSOR REMARK 3 S11: -0.0537 S12: 0.0648 S13: -0.3890 REMARK 3 S21: 0.2966 S22: -0.0344 S23: 0.3036 REMARK 3 S31: 0.3973 S32: -0.2877 S33: 0.0951 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3449 0.6928 -11.4188 REMARK 3 T TENSOR REMARK 3 T11: 0.3039 T22: 0.3177 REMARK 3 T33: 0.2729 T12: 0.0214 REMARK 3 T13: 0.0220 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 5.2361 L22: 6.1082 REMARK 3 L33: 7.6347 L12: -0.5700 REMARK 3 L13: 0.0494 L23: 1.3802 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: -0.3585 S13: -0.5394 REMARK 3 S21: 0.1350 S22: 0.0394 S23: 0.3565 REMARK 3 S31: 0.1448 S32: -0.5314 S33: -0.0429 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8419 3.0072 1.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.5968 T22: 0.4883 REMARK 3 T33: 0.2302 T12: -0.0494 REMARK 3 T13: -0.0878 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.1120 L22: 4.0483 REMARK 3 L33: 2.7600 L12: -0.3796 REMARK 3 L13: 1.6404 L23: 0.5924 REMARK 3 S TENSOR REMARK 3 S11: 0.1114 S12: -0.3345 S13: -0.0286 REMARK 3 S21: 1.0367 S22: -0.0349 S23: -0.0655 REMARK 3 S31: 0.4051 S32: 0.0519 S33: -0.1786 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 356 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6798 4.3232 -4.3099 REMARK 3 T TENSOR REMARK 3 T11: 0.4166 T22: 0.3520 REMARK 3 T33: 0.2737 T12: -0.0244 REMARK 3 T13: -0.0681 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.6613 L22: 7.1336 REMARK 3 L33: 2.6126 L12: 1.2096 REMARK 3 L13: 0.3466 L23: 1.5974 REMARK 3 S TENSOR REMARK 3 S11: 0.1386 S12: -0.5323 S13: 0.2682 REMARK 3 S21: 0.5266 S22: -0.5041 S23: 0.4660 REMARK 3 S31: -0.0255 S32: -0.0933 S33: 0.3048 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1527 17.9872 -22.9658 REMARK 3 T TENSOR REMARK 3 T11: 0.2126 T22: 0.2320 REMARK 3 T33: 0.3008 T12: -0.0248 REMARK 3 T13: 0.0274 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 4.9692 L22: 3.4187 REMARK 3 L33: 3.2187 L12: 1.0163 REMARK 3 L13: 2.4327 L23: -0.7746 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: 0.0523 S13: 0.1020 REMARK 3 S21: -0.2080 S22: 0.2762 S23: -0.2179 REMARK 3 S31: -0.2749 S32: 0.0963 S33: -0.2318 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03149 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27315 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.86900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2XMI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-ACETATE, PEG 4000/6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.44000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 ASP A 209 REMARK 465 GLU A 210 REMARK 465 PRO A 211 REMARK 465 LYS A 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 319 O HOH A 501 1.47 REMARK 500 HZ2 LYS A 366 O HOH A 504 1.56 REMARK 500 O3P 2AM A 401 O HOH A 577 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 314 CA CYS A 314 CB 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 314 CA - CB - SG ANGL. DEV. = -15.7 DEGREES REMARK 500 ARG A 358 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 205 -62.37 -92.67 REMARK 500 THR A 233 -66.24 -100.32 REMARK 500 PRO A 320 121.54 -33.96 REMARK 500 VAL A 321 -25.86 120.94 REMARK 500 GLN A 322 -35.04 -37.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2AM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 DBREF 4WDB A 159 378 UNP P16330 CN37_MOUSE 179 398 SEQADV 4WDB GLY A 158 UNP P16330 EXPRESSION TAG SEQADV 4WDB GLN A 307 UNP P16330 ARG 327 ENGINEERED MUTATION SEQRES 1 A 221 GLY GLY LEU GLU LYS ASP PHE LEU PRO LEU TYR PHE GLY SEQRES 2 A 221 TRP PHE LEU THR LYS LYS SER SER GLU THR LEU ARG LYS SEQRES 3 A 221 ALA GLY GLN VAL PHE LEU GLU GLU LEU GLY ASN HIS LYS SEQRES 4 A 221 ALA PHE LYS LYS GLU LEU ARG HIS PHE ILE SER GLY ASP SEQRES 5 A 221 GLU PRO LYS GLU LYS LEU GLU LEU VAL SER TYR PHE GLY SEQRES 6 A 221 LYS ARG PRO PRO GLY VAL LEU HIS CYS THR THR LYS PHE SEQRES 7 A 221 CYS ASP TYR GLY LYS ALA ALA GLY ALA GLU GLU TYR ALA SEQRES 8 A 221 GLN GLN GLU VAL VAL LYS ARG SER TYR GLY LYS ALA PHE SEQRES 9 A 221 LYS LEU SER ILE SER ALA LEU PHE VAL THR PRO LYS THR SEQRES 10 A 221 ALA GLY ALA GLN VAL VAL LEU THR ASP GLN GLU LEU GLN SEQRES 11 A 221 LEU TRP PRO SER ASP LEU ASP LYS PRO SER ALA SER GLU SEQRES 12 A 221 GLY LEU PRO PRO GLY SER GLN ALA HIS VAL THR LEU GLY SEQRES 13 A 221 CYS ALA ALA ASP VAL GLN PRO VAL GLN THR GLY LEU ASP SEQRES 14 A 221 LEU LEU ASP ILE LEU GLN GLN VAL LYS GLY GLY SER GLN SEQRES 15 A 221 GLY GLU ALA VAL GLY GLU LEU PRO ARG GLY LYS LEU TYR SEQRES 16 A 221 SER LEU GLY LYS GLY ARG TRP MET LEU SER LEU THR LYS SEQRES 17 A 221 LYS MET GLU VAL LYS ALA ILE PHE THR GLY TYR TYR GLY HET 2AM A 401 70 HET CL A 402 1 HETNAM 2AM ADENOSINE-2'-MONOPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 2 2AM C10 H14 N5 O7 P FORMUL 3 CL CL 1- FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 THR A 174 HIS A 195 1 22 HELIX 2 AA2 HIS A 195 GLU A 201 1 7 HELIX 3 AA3 GLU A 216 PHE A 221 1 6 HELIX 4 AA4 ASP A 237 LYS A 240 5 4 HELIX 5 AA5 GLY A 243 GLN A 249 1 7 HELIX 6 AA6 GLN A 250 TYR A 257 1 8 HELIX 7 AA7 THR A 282 GLN A 287 1 6 HELIX 8 AA8 PRO A 296 GLY A 301 5 6 HELIX 9 AA9 VAL A 321 GLY A 336 1 16 SHEET 1 AA1 6 HIS A 230 PHE A 235 0 SHEET 2 AA1 6 TYR A 168 LEU A 173 -1 N TRP A 171 O CYS A 231 SHEET 3 AA1 6 ARG A 358 TYR A 376 -1 O TYR A 376 N TYR A 168 SHEET 4 AA1 6 ALA A 260 VAL A 270 -1 N LEU A 268 O LEU A 361 SHEET 5 AA1 6 THR A 274 VAL A 280 -1 O VAL A 280 N SER A 264 SHEET 6 AA1 6 HIS A 309 CYS A 314 -1 O LEU A 312 N ALA A 275 SHEET 1 AA2 5 HIS A 230 PHE A 235 0 SHEET 2 AA2 5 TYR A 168 LEU A 173 -1 N TRP A 171 O CYS A 231 SHEET 3 AA2 5 ARG A 358 TYR A 376 -1 O TYR A 376 N TYR A 168 SHEET 4 AA2 5 GLY A 349 GLY A 355 -1 N TYR A 352 O MET A 360 SHEET 5 AA2 5 GLY A 344 LEU A 346 -1 N GLY A 344 O LEU A 351 SITE 1 AC1 13 TYR A 168 HIS A 230 THR A 232 PHE A 235 SITE 2 AC1 13 HIS A 309 THR A 311 PRO A 320 VAL A 321 SITE 3 AC1 13 THR A 323 GLY A 324 HOH A 551 HOH A 554 SITE 4 AC1 13 HOH A 577 SITE 1 AC2 5 TRP A 289 SER A 297 GLY A 305 GLN A 307 SITE 2 AC2 5 HOH A 531 CRYST1 38.880 47.890 107.410 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025720 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009310 0.00000