HEADER VIRAL PROTEIN 09-SEP-14 4WE6 TITLE THE CRYSTAL STRUCTURE OF HEMAGGLUTININ HA1 DOMAIN FROM INFLUENZA VIRUS TITLE 2 A/PERTH/142/2007(H3N2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 529795; SOURCE 4 STRAIN: A/PERTH/142/2007(H3N2); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS HEMAGGLUTININ, HA1, H3N2, INFLUENZA VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.YANG,P.J.CARNEY,J.C.CHANG,Z.GUO,J.M.VILLANUEVA,J.STEVENS REVDAT 4 27-DEC-23 4WE6 1 HETSYN REVDAT 3 29-JUL-20 4WE6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 27-SEP-17 4WE6 1 COMPND SOURCE KEYWDS JRNL REVDAT 2 2 1 REMARK REVDAT 1 11-FEB-15 4WE6 0 JRNL AUTH H.YANG,P.J.CARNEY,J.C.CHANG,Z.GUO,J.M.VILLANUEVA,J.STEVENS JRNL TITL STRUCTURE AND RECEPTOR BINDING PREFERENCES OF RECOMBINANT JRNL TITL 2 HUMAN A(H3N2) VIRUS HEMAGGLUTININS. JRNL REF VIROLOGY V.477C 18 2015 JRNL REFN ISSN 0042-6822 JRNL PMID 25617824 JRNL DOI 10.1016/J.VIROL.2014.12.024 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 56707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2277 - 5.3324 0.91 2532 128 0.2062 0.2169 REMARK 3 2 5.3324 - 4.2335 0.90 2385 136 0.1542 0.1867 REMARK 3 3 4.2335 - 3.6987 0.95 2533 148 0.1489 0.1711 REMARK 3 4 3.6987 - 3.3607 0.95 2514 135 0.1523 0.1648 REMARK 3 5 3.3607 - 3.1198 0.97 2571 133 0.1589 0.2087 REMARK 3 6 3.1198 - 2.9359 0.98 2620 134 0.1640 0.1961 REMARK 3 7 2.9359 - 2.7889 0.99 2575 139 0.1618 0.2062 REMARK 3 8 2.7889 - 2.6675 0.99 2569 123 0.1577 0.2095 REMARK 3 9 2.6675 - 2.5649 0.99 2652 147 0.1574 0.1914 REMARK 3 10 2.5649 - 2.4764 1.00 2621 145 0.1664 0.2015 REMARK 3 11 2.4764 - 2.3989 1.00 2590 142 0.1734 0.2128 REMARK 3 12 2.3989 - 2.3304 1.00 2639 140 0.1668 0.1864 REMARK 3 13 2.3304 - 2.2690 1.00 2645 120 0.1606 0.1930 REMARK 3 14 2.2690 - 2.2137 1.00 2605 140 0.1676 0.2137 REMARK 3 15 2.2137 - 2.1633 1.00 2646 140 0.1604 0.1869 REMARK 3 16 2.1633 - 2.1173 0.99 2526 136 0.1740 0.2023 REMARK 3 17 2.1173 - 2.0750 1.00 2669 142 0.1825 0.2186 REMARK 3 18 2.0750 - 2.0358 1.00 2581 141 0.1796 0.2374 REMARK 3 19 2.0358 - 1.9994 0.99 2604 140 0.1883 0.2396 REMARK 3 20 1.9994 - 1.9656 0.99 2624 144 0.2095 0.2289 REMARK 3 21 1.9656 - 1.9338 0.99 2513 141 0.2263 0.2796 REMARK 3 22 1.9338 - 1.9041 0.93 2482 129 0.2635 0.3058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 4486 REMARK 3 ANGLE : 1.683 6074 REMARK 3 CHIRALITY : 0.135 662 REMARK 3 PLANARITY : 0.009 784 REMARK 3 DIHEDRAL : 12.810 1656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0786 -16.7853 59.6331 REMARK 3 T TENSOR REMARK 3 T11: -0.0205 T22: 0.0558 REMARK 3 T33: 0.0695 T12: -0.0199 REMARK 3 T13: 0.0136 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.5957 L22: 1.2202 REMARK 3 L33: 2.4473 L12: -0.5435 REMARK 3 L13: 0.6470 L23: -1.2262 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.0177 S13: 0.0756 REMARK 3 S21: 0.0277 S22: -0.0375 S23: 0.0140 REMARK 3 S31: 0.2192 S32: 0.0538 S33: -0.0255 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6122 -12.5351 75.2773 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.0962 REMARK 3 T33: 0.0496 T12: -0.0170 REMARK 3 T13: -0.0270 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.0016 L22: 0.7153 REMARK 3 L33: 2.2178 L12: -0.9142 REMARK 3 L13: 0.5686 L23: -0.1130 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.1631 S13: 0.0714 REMARK 3 S21: 0.3501 S22: 0.0092 S23: 0.0214 REMARK 3 S31: -0.2403 S32: -0.3501 S33: -0.0118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4286 -9.3052 46.3813 REMARK 3 T TENSOR REMARK 3 T11: 0.0169 T22: 0.0588 REMARK 3 T33: 0.0970 T12: -0.0224 REMARK 3 T13: 0.0072 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.3434 L22: 1.0686 REMARK 3 L33: 0.6120 L12: -0.7353 REMARK 3 L13: 0.0844 L23: -0.6602 REMARK 3 S TENSOR REMARK 3 S11: 0.1367 S12: -0.0511 S13: 0.0379 REMARK 3 S21: -0.1765 S22: -0.0650 S23: 0.1287 REMARK 3 S31: 0.0185 S32: -0.1994 S33: 0.0085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1285 -31.3479 31.4802 REMARK 3 T TENSOR REMARK 3 T11: -0.1159 T22: 0.0247 REMARK 3 T33: 0.0643 T12: 0.0394 REMARK 3 T13: -0.0104 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.6935 L22: 1.5865 REMARK 3 L33: 2.5907 L12: 0.6281 REMARK 3 L13: -0.6925 L23: -1.2183 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0082 S13: -0.0425 REMARK 3 S21: -0.0456 S22: -0.0595 S23: 0.0275 REMARK 3 S31: -0.3678 S32: 0.0665 S33: -0.0166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5471 -35.5872 15.8347 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: 0.1085 REMARK 3 T33: 0.0673 T12: 0.0096 REMARK 3 T13: 0.0111 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.6952 L22: 0.6725 REMARK 3 L33: 2.2417 L12: 0.7484 REMARK 3 L13: -0.5750 L23: 0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.0372 S12: 0.1376 S13: -0.0703 REMARK 3 S21: -0.3663 S22: -0.0090 S23: -0.0029 REMARK 3 S31: 0.1963 S32: -0.3252 S33: -0.0342 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 208 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7939 -38.8432 44.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0776 REMARK 3 T33: 0.1122 T12: 0.0164 REMARK 3 T13: 0.0014 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.2194 L22: 0.9222 REMARK 3 L33: 0.8006 L12: 0.5654 REMARK 3 L13: -0.0596 L23: -0.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: 0.0315 S13: -0.0337 REMARK 3 S21: 0.1688 S22: -0.0562 S23: 0.1439 REMARK 3 S31: -0.0570 S32: -0.1795 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WE6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MGCL2, 0.1 TRIS-HCL, PH8.5, 25% REMARK 280 PEG 3350, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -4 REMARK 465 ASP A -3 REMARK 465 GLN A 271 REMARK 465 ASN A 272 REMARK 465 THR A 273 REMARK 465 LEU A 274 REMARK 465 ALA B -4 REMARK 465 ASP B -3 REMARK 465 GLN B 271 REMARK 465 ASN B 272 REMARK 465 THR B 273 REMARK 465 LEU B 274 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 508 O HOH A 616 1.83 REMARK 500 O HOH A 446 O HOH A 607 1.88 REMARK 500 O HOH B 619 O HOH B 644 1.89 REMARK 500 O HOH B 436 O HOH B 665 1.93 REMARK 500 O HOH A 543 O HOH A 595 1.96 REMARK 500 O HOH A 573 O HOH A 623 1.98 REMARK 500 N LEU A -2 O HOH A 401 2.00 REMARK 500 O HOH A 401 O HOH A 405 2.00 REMARK 500 O HOH A 602 O HOH A 626 2.00 REMARK 500 NH1 ARG B 180 O HOH B 546 2.00 REMARK 500 O HOH B 515 O HOH B 599 2.01 REMARK 500 O HOH B 624 O HOH B 667 2.04 REMARK 500 O HOH A 581 O HOH A 650 2.05 REMARK 500 O HOH B 450 O HOH B 451 2.05 REMARK 500 N LEU B -2 O HOH B 401 2.05 REMARK 500 O HOH B 616 O HOH B 651 2.07 REMARK 500 NZ LYS B 42 O HOH B 617 2.07 REMARK 500 OD2 ASP A 61 O HOH A 546 2.11 REMARK 500 O3 GOL B 304 O HOH B 609 2.12 REMARK 500 O HOH B 590 O HOH B 593 2.13 REMARK 500 O HOH A 620 O HOH A 626 2.13 REMARK 500 O HOH A 490 O HOH A 622 2.14 REMARK 500 O HOH B 584 O HOH B 597 2.15 REMARK 500 OD1 ASP A 61 O HOH A 609 2.15 REMARK 500 O HOH A 606 O HOH A 672 2.15 REMARK 500 O HOH A 622 O HOH A 631 2.16 REMARK 500 O HOH A 667 O HOH A 682 2.16 REMARK 500 O HOH B 530 O HOH B 561 2.17 REMARK 500 O HOH A 560 O HOH A 614 2.17 REMARK 500 O HOH A 608 O HOH A 626 2.17 REMARK 500 O2 GOL B 304 O HOH B 622 2.17 REMARK 500 O HOH A 429 O HOH A 430 2.17 REMARK 500 NE2 GLN B 157 O HOH B 540 2.18 REMARK 500 OE1 GLN B 40 O HOH B 635 2.18 REMARK 500 O LEU A -2 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 -120.98 44.81 REMARK 500 ASN A 56 36.49 -141.99 REMARK 500 CYS A 57 -156.71 -132.69 REMARK 500 ASP A 64 40.00 -98.79 REMARK 500 TRP A 87 42.19 -94.22 REMARK 500 SER A 106 -154.79 -150.45 REMARK 500 LYS B 22 -119.70 43.38 REMARK 500 ASN B 56 42.02 -144.27 REMARK 500 CYS B 57 -156.52 -133.97 REMARK 500 ASP B 64 38.37 -98.76 REMARK 500 TRP B 87 43.35 -96.44 REMARK 500 SER B 106 -158.48 -148.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 614 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B 619 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 639 DISTANCE = 6.25 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WE4 RELATED DB: PDB REMARK 900 RELATED ID: 4WE5 RELATED DB: PDB REMARK 900 RELATED ID: 4WE7 RELATED DB: PDB REMARK 900 RELATED ID: 4WE8 RELATED DB: PDB REMARK 900 RELATED ID: 4WE9 RELATED DB: PDB REMARK 900 RELATED ID: 4WEA RELATED DB: PDB DBREF 4WE6 A 1 274 UNP G8HJ45 G8HJ45_9INFA 36 309 DBREF 4WE6 B 1 274 UNP G8HJ45 G8HJ45_9INFA 36 309 SEQADV 4WE6 ALA A -4 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 ASP A -3 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 LEU A -2 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 GLY A -1 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 SER A 0 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 SER A 174 UNP G8HJ45 ILE 209 CONFLICT SEQADV 4WE6 ALA B -4 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 ASP B -3 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 LEU B -2 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 GLY B -1 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 SER B 0 UNP G8HJ45 EXPRESSION TAG SEQADV 4WE6 SER B 174 UNP G8HJ45 ILE 209 CONFLICT SEQRES 1 A 279 ALA ASP LEU GLY SER GLU LEU VAL GLN SER SER SER THR SEQRES 2 A 279 GLY GLU ILE CYS ASP SER PRO HIS GLN ILE LEU ASP GLY SEQRES 3 A 279 LYS ASN CYS THR LEU ILE ASP ALA LEU LEU GLY ASP PRO SEQRES 4 A 279 GLN CYS ASP GLY PHE GLN ASN LYS LYS TRP ASP LEU PHE SEQRES 5 A 279 VAL GLU ARG SER LYS ALA TYR SER ASN CYS TYR PRO TYR SEQRES 6 A 279 ASP VAL PRO ASP TYR ALA SER LEU ARG SER LEU VAL ALA SEQRES 7 A 279 SER SER GLY THR LEU GLU PHE ASN ASN GLU SER PHE ASN SEQRES 8 A 279 TRP THR GLY VAL THR GLN ASN GLY THR SER SER ALA CYS SEQRES 9 A 279 ILE ARG ARG SER LYS ASN SER PHE PHE SER ARG LEU ASN SEQRES 10 A 279 TRP LEU THR HIS LEU ASN PHE LYS TYR PRO ALA LEU ASN SEQRES 11 A 279 VAL THR MET PRO ASN ASN GLU GLN PHE ASP LYS LEU TYR SEQRES 12 A 279 ILE TRP GLY VAL HIS HIS PRO GLY THR ASP LYS ASP GLN SEQRES 13 A 279 ILE PHE LEU TYR ALA GLN ALA SER GLY ARG ILE THR VAL SEQRES 14 A 279 SER THR LYS ARG SER GLN GLN THR VAL SER PRO ASN ILE SEQRES 15 A 279 GLY SER ARG PRO ARG VAL ARG ASN ILE PRO SER ARG ILE SEQRES 16 A 279 SER ILE TYR TRP THR ILE VAL LYS PRO GLY ASP ILE LEU SEQRES 17 A 279 LEU ILE ASN SER THR GLY ASN LEU ILE ALA PRO ARG GLY SEQRES 18 A 279 TYR PHE LYS ILE ARG SER GLY LYS SER SER ILE MET ARG SEQRES 19 A 279 SER ASP ALA PRO ILE GLY LYS CYS ASN SER GLU CYS ILE SEQRES 20 A 279 THR PRO ASN GLY SER ILE PRO ASN ASP LYS PRO PHE GLN SEQRES 21 A 279 ASN VAL ASN ARG ILE THR TYR GLY ALA CYS PRO ARG TYR SEQRES 22 A 279 VAL LYS GLN ASN THR LEU SEQRES 1 B 279 ALA ASP LEU GLY SER GLU LEU VAL GLN SER SER SER THR SEQRES 2 B 279 GLY GLU ILE CYS ASP SER PRO HIS GLN ILE LEU ASP GLY SEQRES 3 B 279 LYS ASN CYS THR LEU ILE ASP ALA LEU LEU GLY ASP PRO SEQRES 4 B 279 GLN CYS ASP GLY PHE GLN ASN LYS LYS TRP ASP LEU PHE SEQRES 5 B 279 VAL GLU ARG SER LYS ALA TYR SER ASN CYS TYR PRO TYR SEQRES 6 B 279 ASP VAL PRO ASP TYR ALA SER LEU ARG SER LEU VAL ALA SEQRES 7 B 279 SER SER GLY THR LEU GLU PHE ASN ASN GLU SER PHE ASN SEQRES 8 B 279 TRP THR GLY VAL THR GLN ASN GLY THR SER SER ALA CYS SEQRES 9 B 279 ILE ARG ARG SER LYS ASN SER PHE PHE SER ARG LEU ASN SEQRES 10 B 279 TRP LEU THR HIS LEU ASN PHE LYS TYR PRO ALA LEU ASN SEQRES 11 B 279 VAL THR MET PRO ASN ASN GLU GLN PHE ASP LYS LEU TYR SEQRES 12 B 279 ILE TRP GLY VAL HIS HIS PRO GLY THR ASP LYS ASP GLN SEQRES 13 B 279 ILE PHE LEU TYR ALA GLN ALA SER GLY ARG ILE THR VAL SEQRES 14 B 279 SER THR LYS ARG SER GLN GLN THR VAL SER PRO ASN ILE SEQRES 15 B 279 GLY SER ARG PRO ARG VAL ARG ASN ILE PRO SER ARG ILE SEQRES 16 B 279 SER ILE TYR TRP THR ILE VAL LYS PRO GLY ASP ILE LEU SEQRES 17 B 279 LEU ILE ASN SER THR GLY ASN LEU ILE ALA PRO ARG GLY SEQRES 18 B 279 TYR PHE LYS ILE ARG SER GLY LYS SER SER ILE MET ARG SEQRES 19 B 279 SER ASP ALA PRO ILE GLY LYS CYS ASN SER GLU CYS ILE SEQRES 20 B 279 THR PRO ASN GLY SER ILE PRO ASN ASP LYS PRO PHE GLN SEQRES 21 B 279 ASN VAL ASN ARG ILE THR TYR GLY ALA CYS PRO ARG TYR SEQRES 22 B 279 VAL LYS GLN ASN THR LEU HET NAG A 301 14 HET NAG A 302 14 HET GOL A 303 6 HET GOL A 304 6 HET NAG B 301 14 HET NAG B 302 14 HET GOL B 303 6 HET GOL B 304 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 GOL 4(C3 H8 O3) FORMUL 11 HOH *580(H2 O) HELIX 1 AA1 THR A 25 GLY A 32 1 8 HELIX 2 AA2 ASP A 33 GLN A 40 5 8 HELIX 3 AA3 ASP A 64 GLY A 76 1 13 HELIX 4 AA4 THR A 147 ALA A 156 1 10 HELIX 5 AA5 THR B 25 GLY B 32 1 8 HELIX 6 AA6 ASP B 33 GLN B 40 5 8 HELIX 7 AA7 ASP B 64 GLY B 76 1 13 HELIX 8 AA8 THR B 147 ALA B 156 1 10 SHEET 1 AA1 3 VAL A 3 GLN A 4 0 SHEET 2 AA1 3 PHE A 254 GLN A 255 1 O PHE A 254 N GLN A 4 SHEET 3 AA1 3 ARG A 267 TYR A 268 1 O ARG A 267 N GLN A 255 SHEET 1 AA2 2 ILE A 11 SER A 14 0 SHEET 2 AA2 2 ILE A 234 ASN A 238 1 O GLY A 235 N ILE A 11 SHEET 1 AA3 3 ILE A 18 ASP A 20 0 SHEET 2 AA3 3 LEU A 46 GLU A 49 1 O VAL A 48 N LEU A 19 SHEET 3 AA3 3 SER A 226 ARG A 229 1 O MET A 228 N GLU A 49 SHEET 1 AA4 5 TYR A 60 ASP A 61 0 SHEET 2 AA4 5 ARG A 189 VAL A 197 1 O ILE A 192 N ASP A 61 SHEET 3 AA4 5 LYS A 136 HIS A 144 -1 N HIS A 144 O ARG A 189 SHEET 4 AA4 5 GLY A 216 LYS A 219 -1 O PHE A 218 N LEU A 137 SHEET 5 AA4 5 PHE A 80 ASN A 82 -1 N ASN A 81 O TYR A 217 SHEET 1 AA5 5 TYR A 60 ASP A 61 0 SHEET 2 AA5 5 ARG A 189 VAL A 197 1 O ILE A 192 N ASP A 61 SHEET 3 AA5 5 LYS A 136 HIS A 144 -1 N HIS A 144 O ARG A 189 SHEET 4 AA5 5 LEU A 211 PRO A 214 -1 O ILE A 212 N GLY A 141 SHEET 5 AA5 5 LEU A 111 TRP A 113 -1 N ASN A 112 O ALA A 213 SHEET 1 AA6 2 SER A 96 ARG A 101 0 SHEET 2 AA6 2 LYS A 104 SER A 106 -1 O LYS A 104 N ARG A 101 SHEET 1 AA7 4 LEU A 124 PRO A 129 0 SHEET 2 AA7 4 ILE A 202 SER A 207 -1 O LEU A 203 N MET A 128 SHEET 3 AA7 4 ILE A 162 THR A 166 -1 N THR A 163 O ASN A 206 SHEET 4 AA7 4 SER A 169 VAL A 173 -1 O SER A 169 N THR A 166 SHEET 1 AA8 2 CYS A 241 THR A 243 0 SHEET 2 AA8 2 GLY A 246 ILE A 248 -1 O ILE A 248 N CYS A 241 SHEET 1 AA9 3 VAL B 3 GLN B 4 0 SHEET 2 AA9 3 PHE B 254 GLN B 255 1 O PHE B 254 N GLN B 4 SHEET 3 AA9 3 ARG B 267 TYR B 268 1 O ARG B 267 N GLN B 255 SHEET 1 AB1 2 ILE B 11 SER B 14 0 SHEET 2 AB1 2 ILE B 234 ASN B 238 1 O GLY B 235 N ILE B 11 SHEET 1 AB2 3 ILE B 18 ASP B 20 0 SHEET 2 AB2 3 LEU B 46 GLU B 49 1 O VAL B 48 N LEU B 19 SHEET 3 AB2 3 SER B 226 ARG B 229 1 O MET B 228 N GLU B 49 SHEET 1 AB3 5 TYR B 60 ASP B 61 0 SHEET 2 AB3 5 ARG B 189 VAL B 197 1 O ILE B 192 N ASP B 61 SHEET 3 AB3 5 LYS B 136 HIS B 144 -1 N HIS B 144 O ARG B 189 SHEET 4 AB3 5 GLY B 216 LYS B 219 -1 O PHE B 218 N LEU B 137 SHEET 5 AB3 5 PHE B 80 ASN B 82 -1 N ASN B 81 O TYR B 217 SHEET 1 AB4 5 TYR B 60 ASP B 61 0 SHEET 2 AB4 5 ARG B 189 VAL B 197 1 O ILE B 192 N ASP B 61 SHEET 3 AB4 5 LYS B 136 HIS B 144 -1 N HIS B 144 O ARG B 189 SHEET 4 AB4 5 LEU B 211 PRO B 214 -1 O ILE B 212 N GLY B 141 SHEET 5 AB4 5 LEU B 111 TRP B 113 -1 N ASN B 112 O ALA B 213 SHEET 1 AB5 2 SER B 96 ARG B 101 0 SHEET 2 AB5 2 LYS B 104 SER B 106 -1 O LYS B 104 N ARG B 101 SHEET 1 AB6 4 LEU B 124 PRO B 129 0 SHEET 2 AB6 4 ILE B 202 SER B 207 -1 O ILE B 205 N VAL B 126 SHEET 3 AB6 4 ILE B 162 SER B 165 -1 N THR B 163 O ASN B 206 SHEET 4 AB6 4 GLN B 170 VAL B 173 -1 O GLN B 171 N VAL B 164 SHEET 1 AB7 2 CYS B 241 THR B 243 0 SHEET 2 AB7 2 GLY B 246 ILE B 248 -1 O ILE B 248 N CYS B 241 SSBOND 1 CYS A 12 CYS A 237 1555 1555 2.13 SSBOND 2 CYS A 24 CYS A 36 1555 1555 2.17 SSBOND 3 CYS A 57 CYS A 99 1555 1555 2.15 SSBOND 4 CYS A 241 CYS A 265 1555 1555 2.13 SSBOND 5 CYS B 12 CYS B 237 1555 1555 2.14 SSBOND 6 CYS B 24 CYS B 36 1555 1555 2.15 SSBOND 7 CYS B 57 CYS B 99 1555 1555 2.15 SSBOND 8 CYS B 241 CYS B 265 1555 1555 2.11 LINK ND2 ASN A 86 C1 NAG A 301 1555 1555 1.46 LINK ND2 ASN A 93 C1 NAG A 302 1555 1555 1.47 LINK ND2 ASN B 86 C1 NAG B 301 1555 1555 1.46 LINK ND2 ASN B 93 C1 NAG B 302 1555 1555 1.45 CISPEP 1 SER A 14 PRO A 15 0 3.44 CISPEP 2 SER B 14 PRO B 15 0 3.19 CRYST1 42.472 50.567 182.256 90.00 90.08 90.00 P 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023545 0.000000 0.000034 0.00000 SCALE2 0.000000 0.019776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005487 0.00000