HEADER OXIDOREDUCTASE 10-SEP-14 4WEQ TITLE CRYSTAL STRUCTURE OF NADPH-DEPENDENT GLYOXYLATE/HYDROXYPYRUVATE TITLE 2 REDUCTASE SMC02828 (SMGHRA) FROM SINORHIZOBIUM MELILOTI IN COMPLEX TITLE 3 WITH NADP AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.79; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN WAS SUBJECTED TO LIMITED PROTEOLYSIS BY COMPND 7 CHYMOTRYPSIN RIGHT BEFORE CRYSTALLIZATION. SUPPOSINGLY THE HIS-TAG COMPND 8 WAS CLEAVED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R00152, SMC02828, CAC41539.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS NADP-DEPENDENT DEHYDROGENASE, STRUCTURAL GENOMICS, NYSGRC, PSI- KEYWDS 2 BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SROKA,O.A.GASIOROWSKA,K.B.HANDING,I.G.SHABALIN,T.OSINSKI, AUTHOR 2 B.S.HILLERICH,J.BONANNO,S.C.ALMO,W.MINOR,NEW YORK STRUCTURAL AUTHOR 3 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 7 27-DEC-23 4WEQ 1 REMARK REVDAT 6 13-APR-22 4WEQ 1 AUTHOR JRNL REVDAT 5 04-DEC-19 4WEQ 1 REMARK REVDAT 4 16-MAY-18 4WEQ 1 TITLE COMPND JRNL REMARK REVDAT 3 22-NOV-17 4WEQ 1 REMARK REVDAT 2 14-OCT-15 4WEQ 1 REMARK REVDAT 1 24-SEP-14 4WEQ 0 JRNL AUTH J.KUTNER,I.G.SHABALIN,D.MATELSKA,K.B.HANDING,O.GASIOROWSKA, JRNL AUTH 2 P.SROKA,M.W.GORNA,K.GINALSKI,K.WOZNIAK,W.MINOR JRNL TITL STRUCTURAL, BIOCHEMICAL, AND EVOLUTIONARY CHARACTERIZATIONS JRNL TITL 2 OF GLYOXYLATE/HYDROXYPYRUVATE REDUCTASES SHOW THEIR DIVISION JRNL TITL 3 INTO TWO DISTINCT SUBFAMILIES. JRNL REF BIOCHEMISTRY V. 57 963 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29309127 JRNL DOI 10.1021/ACS.BIOCHEM.7B01137 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2415 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.87000 REMARK 3 B22 (A**2) : 0.87000 REMARK 3 B33 (A**2) : -2.83000 REMARK 3 B12 (A**2) : 0.44000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2561 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2416 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3492 ; 1.754 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5553 ; 0.840 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 5.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.203 ;23.241 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;12.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;16.206 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2854 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 576 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1267 ; 1.887 ; 2.676 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1266 ; 1.887 ; 2.676 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1583 ; 2.542 ; 3.997 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): -37.9840 31.8330 0.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.2192 REMARK 3 T33: 0.1205 T12: -0.0344 REMARK 3 T13: -0.0700 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.1103 L22: 8.0546 REMARK 3 L33: 4.6418 L12: 2.5416 REMARK 3 L13: -0.1362 L23: 1.9938 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: 0.0377 S13: 0.2452 REMARK 3 S21: -0.0902 S22: -0.2018 S23: -0.1357 REMARK 3 S31: -0.3801 S32: 0.1010 S33: 0.1140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -42.3520 27.2080 -3.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.0872 T22: 0.2603 REMARK 3 T33: 0.0866 T12: -0.0199 REMARK 3 T13: -0.0159 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 3.2355 L22: 4.8752 REMARK 3 L33: 2.7568 L12: -0.1326 REMARK 3 L13: 0.1477 L23: -0.4997 REMARK 3 S TENSOR REMARK 3 S11: 0.2180 S12: 0.4684 S13: -0.0014 REMARK 3 S21: -0.0249 S22: -0.2526 S23: -0.2027 REMARK 3 S31: 0.2809 S32: -0.2393 S33: 0.0345 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): -46.1430 22.6390 7.8550 REMARK 3 T TENSOR REMARK 3 T11: 0.2189 T22: 0.2501 REMARK 3 T33: 0.2056 T12: -0.1460 REMARK 3 T13: -0.0732 T23: -0.0854 REMARK 3 L TENSOR REMARK 3 L11: 0.2033 L22: 0.4499 REMARK 3 L33: 4.0611 L12: 0.2358 REMARK 3 L13: 0.1779 L23: 0.2951 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: 0.0491 S13: -0.1460 REMARK 3 S21: 0.1582 S22: -0.0644 S23: -0.0469 REMARK 3 S31: 0.1549 S32: -0.3490 S33: -0.0352 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3620 40.7450 31.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.2126 REMARK 3 T33: 0.1437 T12: -0.0976 REMARK 3 T13: 0.0101 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.2897 L22: 1.3738 REMARK 3 L33: 1.2459 L12: 0.5512 REMARK 3 L13: 0.4361 L23: 0.4011 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: -0.1297 S13: 0.0525 REMARK 3 S21: 0.0409 S22: 0.0159 S23: 0.0655 REMARK 3 S31: 0.0671 S32: -0.0058 S33: -0.0979 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7290 24.6450 32.8910 REMARK 3 T TENSOR REMARK 3 T11: 0.3779 T22: 0.1750 REMARK 3 T33: 0.1822 T12: -0.1333 REMARK 3 T13: -0.0669 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 6.2607 L22: 2.7820 REMARK 3 L33: 1.3977 L12: 3.1207 REMARK 3 L13: -0.7297 L23: 0.0080 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.0175 S13: -0.6116 REMARK 3 S21: -0.0643 S22: 0.1588 S23: -0.1561 REMARK 3 S31: 0.6579 S32: -0.1069 S33: -0.0506 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4710 32.8040 35.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.2507 REMARK 3 T33: 0.1423 T12: -0.1492 REMARK 3 T13: 0.0049 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 1.3067 L22: 1.1583 REMARK 3 L33: 2.1919 L12: 0.2430 REMARK 3 L13: 0.4754 L23: 0.0505 REMARK 3 S TENSOR REMARK 3 S11: 0.0858 S12: -0.2466 S13: -0.1253 REMARK 3 S21: 0.0764 S22: 0.0593 S23: 0.1554 REMARK 3 S31: 0.2974 S32: -0.2556 S33: -0.1452 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): -39.9460 43.0130 21.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.2702 REMARK 3 T33: 0.2208 T12: -0.1133 REMARK 3 T13: -0.0202 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 2.1850 L22: 2.3702 REMARK 3 L33: 2.9820 L12: -0.5712 REMARK 3 L13: -0.0217 L23: 1.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -0.0162 S13: 0.1017 REMARK 3 S21: -0.0854 S22: 0.0169 S23: 0.1789 REMARK 3 S31: -0.0712 S32: -0.2815 S33: -0.0894 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): -36.1800 16.5930 8.7000 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.1661 REMARK 3 T33: 0.3450 T12: -0.0785 REMARK 3 T13: -0.0508 T23: -0.0690 REMARK 3 L TENSOR REMARK 3 L11: 2.1975 L22: 0.1326 REMARK 3 L33: 6.3174 L12: 0.3905 REMARK 3 L13: 0.1354 L23: -0.3501 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.2458 S13: -0.5837 REMARK 3 S21: 0.0541 S22: -0.0443 S23: -0.1161 REMARK 3 S31: 0.8548 S32: 0.3734 S33: -0.0241 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4WEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : SI [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37017 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.84600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 12 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE, 0.5 REMARK 280 MM TCEP, AND 5 MM NADP WERE MIXED WITH 0.2 UL OF THE MCSG-I REMARK 280 CONDITION #6 (0.2 M AMMONIUM SULFATE 0.1 M BIS-TRIS:HCL PH 5.5 REMARK 280 25% (W/V) PEG 3350) AND EQUILIBRATED AGAINST 1.5 M NACL SOLUTION REMARK 280 IN 96 WELL 3 DROP CRYSTALLIZATION PLATE (SWISSCI). BEFORE REMARK 280 CRYSTALLIZATION, THE PROTEIN-LIGAND MIXTURE WAS INCUBATED WITH 1/ REMARK 280 40 V/V OF 2 MG/ML CHYMOTRYPSIN SOLUTION AT 289 K FOR 3 HOURS, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.77133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.88567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.88567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.77133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.77133 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 589 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 NZ REMARK 470 LYS A 54 NZ REMARK 470 ARG A 96 NE CZ NH1 NH2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 709 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 720 DISTANCE = 5.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011884 RELATED DB: TARGETTRACK DBREF 4WEQ A 1 319 UNP Q92T34 Q92T34_RHIME 1 319 SEQADV 4WEQ MET A -21 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ HIS A -20 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ HIS A -19 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ HIS A -18 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ HIS A -17 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ HIS A -16 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ HIS A -15 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ SER A -14 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ SER A -13 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ GLY A -12 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ VAL A -11 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ ASP A -10 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ LEU A -9 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ GLY A -8 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ THR A -7 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ GLU A -6 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ ASN A -5 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ LEU A -4 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ TYR A -3 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ PHE A -2 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ GLN A -1 UNP Q92T34 EXPRESSION TAG SEQADV 4WEQ SER A 0 UNP Q92T34 EXPRESSION TAG SEQRES 1 A 341 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 341 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ALA LYS SEQRES 3 A 341 SER PRO VAL ILE VAL ASP LEU LYS PHE ILE PRO GLU GLU SEQRES 4 A 341 VAL GLU ALA ALA LEU ALA GLY ALA PHE PRO GLY ARG GLU SEQRES 5 A 341 VAL ILE ASP LEU ALA ASP PRO ALA HIS GLN GLU ARG ASP SEQRES 6 A 341 LEU SER GLY ILE ASP TYR ALA VAL VAL TRP LYS SER ALA SEQRES 7 A 341 PRO ASP LEU PHE SER ARG ALA PRO ASP LEU LYS VAL VAL SEQRES 8 A 341 PHE SER GLY GLY ALA GLY VAL ASP HIS VAL LEU THR LEU SEQRES 9 A 341 PRO GLY LEU PRO ASP VAL PRO LEU VAL ARG PHE VAL ASP SEQRES 10 A 341 ARG THR LEU THR THR ARG MET SER GLU TRP VAL MET MET SEQRES 11 A 341 GLN CYS LEU LEU HIS LEU ARG GLN HIS ARG ALA TYR GLU SEQRES 12 A 341 ALA LEU ALA LYS LYS HIS GLU TRP ARG ASP LEU SER GLN SEQRES 13 A 341 PRO GLU ALA ALA ASP VAL THR VAL GLY ILE MET GLY MET SEQRES 14 A 341 GLY VAL LEU GLY GLN ASP ALA ALA ARG LYS LEU ALA ALA SEQRES 15 A 341 MET GLY PHE LYS VAL ILE GLY TRP SER ARG SER LYS ARG SEQRES 16 A 341 VAL ILE GLU GLY VAL GLU THR TYR ASP ALA ALA GLY LEU SEQRES 17 A 341 ASP ALA PHE LEU GLY ARG THR ASP PHE LEU VAL GLY LEU SEQRES 18 A 341 LEU PRO LEU THR PRO ASP THR ARG GLY ILE PHE ASN ALA SEQRES 19 A 341 ALA LEU PHE ALA LYS LEU SER ARG ASN GLY PRO PHE GLY SEQRES 20 A 341 ALA PRO VAL PHE ILE ASN ALA GLY ARG GLY GLY SER GLN SEQRES 21 A 341 VAL GLU ALA ASP ILE LEU GLU CYS LEU ASP SER GLY VAL SEQRES 22 A 341 LEU GLY GLY ALA SER LEU ASP VAL PHE GLU ARG GLU PRO SEQRES 23 A 341 LEU SER PRO GLU SER ARG PHE TRP ASP MET PRO ASN VAL SEQRES 24 A 341 TYR VAL THR PRO HIS VAL ALA ALA SER SER ASP VAL ARG SEQRES 25 A 341 ALA LEU PHE VAL HIS VAL GLU HIS GLN ILE ALA ARG PHE SEQRES 26 A 341 GLU SER GLY LEU PRO LEU GLU HIS VAL VAL ASP LYS VAL SEQRES 27 A 341 ALA GLY TYR HET NAP A 401 48 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET PEG A 405 7 HET GOL A 406 6 HET CL A 407 1 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 PEG C4 H10 O3 FORMUL 7 GOL C3 H8 O3 FORMUL 8 CL CL 1- FORMUL 9 HOH *248(H2 O) HELIX 1 AA1 ILE A 14 ALA A 23 1 10 HELIX 2 AA2 ASP A 36 GLN A 40 5 5 HELIX 3 AA3 ASP A 58 ALA A 63 1 6 HELIX 4 AA4 HIS A 78 LEU A 82 5 5 HELIX 5 AA5 ASP A 95 ARG A 115 1 21 HELIX 6 AA6 GLN A 116 LYS A 126 1 11 HELIX 7 AA7 GLU A 136 ASP A 139 5 4 HELIX 8 AA8 GLY A 148 GLY A 162 1 15 HELIX 9 AA9 ASP A 182 ALA A 184 5 3 HELIX 10 AB1 GLY A 185 THR A 193 1 9 HELIX 11 AB2 ASN A 211 LEU A 218 1 8 HELIX 12 AB3 ARG A 234 GLN A 238 5 5 HELIX 13 AB4 VAL A 239 GLY A 250 1 12 HELIX 14 AB5 SER A 269 MET A 274 5 6 HELIX 15 AB6 ASP A 288 SER A 305 1 18 SHEET 1 AA1 5 VAL A 31 ASP A 33 0 SHEET 2 AA1 5 VAL A 7 LEU A 11 1 N VAL A 7 O ILE A 32 SHEET 3 AA1 5 TYR A 49 TRP A 53 1 O VAL A 51 N ASP A 10 SHEET 4 AA1 5 VAL A 68 SER A 71 1 O PHE A 70 N VAL A 52 SHEET 5 AA1 5 LEU A 90 VAL A 91 1 O VAL A 91 N VAL A 69 SHEET 1 AA2 7 GLU A 179 TYR A 181 0 SHEET 2 AA2 7 LYS A 164 TRP A 168 1 N GLY A 167 O TYR A 181 SHEET 3 AA2 7 THR A 141 MET A 145 1 N VAL A 142 O LYS A 164 SHEET 4 AA2 7 PHE A 195 GLY A 198 1 O VAL A 197 N GLY A 143 SHEET 5 AA2 7 VAL A 228 ASN A 231 1 O ILE A 230 N GLY A 198 SHEET 6 AA2 7 GLY A 254 LEU A 257 1 O SER A 256 N ASN A 231 SHEET 7 AA2 7 VAL A 277 VAL A 279 1 O TYR A 278 N LEU A 257 CISPEP 1 GLU A 263 PRO A 264 0 -6.81 SITE 1 AC1 33 GLY A 75 ARG A 92 MET A 102 MET A 147 SITE 2 AC1 33 GLY A 148 VAL A 149 LEU A 150 TRP A 168 SITE 3 AC1 33 SER A 169 ARG A 170 SER A 171 ARG A 173 SITE 4 AC1 33 LEU A 199 LEU A 200 PRO A 201 ALA A 232 SITE 5 AC1 33 GLY A 233 ARG A 234 ASP A 258 HIS A 282 SITE 6 AC1 33 ALA A 284 ALA A 285 TYR A 319 SO4 A 402 SITE 7 AC1 33 HOH A 601 HOH A 607 HOH A 608 HOH A 610 SITE 8 AC1 33 HOH A 626 HOH A 627 HOH A 628 HOH A 663 SITE 9 AC1 33 HOH A 719 SITE 1 AC2 7 TRP A 53 GLY A 73 ALA A 74 GLY A 75 SITE 2 AC2 7 ARG A 234 HIS A 282 NAP A 401 SITE 1 AC3 4 ARG A 92 HIS A 311 HOH A 665 HOH A 667 SITE 1 AC4 5 HIS A 117 ARG A 118 GLU A 121 TYR A 278 SITE 2 AC4 5 HOH A 510 SITE 1 AC5 2 GLY A 28 GLU A 30 SITE 1 AC6 5 HIS A 113 GLN A 116 VAL A 228 HOH A 616 SITE 2 AC6 5 HOH A 617 SITE 1 AC7 2 PRO A 275 ASN A 276 CRYST1 108.153 108.153 80.657 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009246 0.005338 0.000000 0.00000 SCALE2 0.000000 0.010677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012398 0.00000