HEADER RNA 15-SEP-14 4WFL TITLE STRUCTURE OF THE COMPLETE BACTERIAL SRP ALU DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 3-81,RESIDUES 3-81; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 4 ORGANISM_TAXID: 224308 KEYWDS NON-CODING, RNA, SRP RNA, ELONGATION ARREST EXPDTA X-RAY DIFFRACTION AUTHOR G.KEMPF,K.WILD,I.SINNING REVDAT 4 08-MAY-24 4WFL 1 LINK REVDAT 3 06-SEP-17 4WFL 1 LINK SITE ATOM REVDAT 2 19-NOV-14 4WFL 1 JRNL REVDAT 1 15-OCT-14 4WFL 0 JRNL AUTH G.KEMPF,K.WILD,I.SINNING JRNL TITL STRUCTURE OF THE COMPLETE BACTERIAL SRP ALU DOMAIN. JRNL REF NUCLEIC ACIDS RES. V. 42 12284 2014 JRNL REFN ESSN 1362-4962 JRNL PMID 25270875 JRNL DOI 10.1093/NAR/GKU883 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5012 - 6.3953 1.00 1283 135 0.1259 0.1418 REMARK 3 2 6.3953 - 5.0791 1.00 1288 134 0.1258 0.1701 REMARK 3 3 5.0791 - 4.4379 1.00 1233 156 0.1249 0.1476 REMARK 3 4 4.4379 - 4.0325 0.98 1237 149 0.1336 0.1600 REMARK 3 5 4.0325 - 3.7437 0.99 1281 118 0.1340 0.1526 REMARK 3 6 3.7437 - 3.5231 0.99 1273 142 0.1505 0.1703 REMARK 3 7 3.5231 - 3.3467 1.00 1264 141 0.1601 0.2338 REMARK 3 8 3.3467 - 3.2011 1.00 1257 155 0.1919 0.1961 REMARK 3 9 3.2011 - 3.0779 1.00 1283 124 0.1990 0.2213 REMARK 3 10 3.0779 - 2.9717 1.00 1250 147 0.2136 0.2495 REMARK 3 11 2.9717 - 2.8788 1.00 1282 133 0.2591 0.3186 REMARK 3 12 2.8788 - 2.7966 1.00 1286 138 0.2844 0.3472 REMARK 3 13 2.7966 - 2.7229 1.00 1246 149 0.3163 0.3314 REMARK 3 14 2.7229 - 2.6565 1.00 1335 111 0.3379 0.3521 REMARK 3 15 2.6565 - 2.5961 1.00 1253 121 0.3262 0.4380 REMARK 3 16 2.5961 - 2.5409 1.00 1250 149 0.3439 0.3951 REMARK 3 17 2.5409 - 2.4901 1.00 1250 171 0.3457 0.3506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2675 REMARK 3 ANGLE : 0.587 4269 REMARK 3 CHIRALITY : 0.030 534 REMARK 3 PLANARITY : 0.003 107 REMARK 3 DIHEDRAL : 14.427 1283 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3742 -10.8019 7.3623 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.2861 REMARK 3 T33: 0.3756 T12: 0.0544 REMARK 3 T13: -0.0242 T23: 0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.6577 L22: 1.7542 REMARK 3 L33: 1.7845 L12: -0.1758 REMARK 3 L13: -0.2642 L23: -1.4202 REMARK 3 S TENSOR REMARK 3 S11: -0.1223 S12: 0.0870 S13: -0.0963 REMARK 3 S21: 0.0629 S22: -0.1925 S23: -0.1890 REMARK 3 S31: -0.1081 S32: 0.0647 S33: 0.3502 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0586 -7.6625 19.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.3335 T22: 0.2035 REMARK 3 T33: 0.3262 T12: 0.0451 REMARK 3 T13: -0.0952 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 8.0548 L22: 5.2646 REMARK 3 L33: 3.4841 L12: 2.9513 REMARK 3 L13: -2.3484 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: -0.1509 S13: 0.3257 REMARK 3 S21: 0.2397 S22: -0.0652 S23: 0.4385 REMARK 3 S31: -0.4022 S32: 0.0600 S33: 0.0331 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2507 -18.8616 -4.6526 REMARK 3 T TENSOR REMARK 3 T11: 0.4857 T22: 0.2507 REMARK 3 T33: 0.4550 T12: 0.0390 REMARK 3 T13: 0.0250 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: 0.1156 L22: 4.8353 REMARK 3 L33: 0.5200 L12: -0.1506 REMARK 3 L13: 0.0421 L23: -0.4959 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: 0.0559 S13: -0.0834 REMARK 3 S21: 0.0578 S22: 0.0709 S23: 0.3337 REMARK 3 S31: -0.0155 S32: -0.0464 S33: 0.0730 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WFL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.60549, 1.60489, 1.03321 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 46.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, AMMONIUM ACETATE, REMARK 280 MAGNESIUM ACETATE, PEG8000, JEFFAMINE-M600, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.23300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.49550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.14150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.49550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.23300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.14150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C A 15 OP1 C A 38 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 4 O3' - P - O5' ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A 3 O1G REMARK 620 2 GTP A 3 O3A 88.7 REMARK 620 3 GTP A 3 O1A 87.1 58.9 REMARK 620 4 HOH A 306 O 81.2 141.7 83.7 REMARK 620 5 HOH A 320 O 82.5 119.7 169.6 95.6 REMARK 620 6 HOH A 330 O 172.0 98.9 98.8 94.0 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 304 O REMARK 620 2 HOH A 333 O 90.3 REMARK 620 3 HOH A 338 O 90.0 89.9 REMARK 620 4 HOH A 340 O 89.8 90.3 179.7 REMARK 620 5 HOH A 344 O 179.7 90.1 89.9 90.3 REMARK 620 6 HOH A 346 O 89.7 179.9 89.9 89.9 90.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 305 O REMARK 620 2 HOH A 308 O 90.1 REMARK 620 3 HOH A 341 O 90.1 90.4 REMARK 620 4 HOH A 342 O 179.9 89.9 89.9 REMARK 620 5 HOH A 343 O 90.0 179.9 89.7 90.0 REMARK 620 6 HOH A 345 O 90.0 89.8 179.8 90.0 90.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 218 DBREF 4WFL A 3 81 GB 40131 X06802.1 3 81 DBREF 4WFL A 82 109 PDB 4WFL 4WFL 82 109 SEQADV 4WFL GTP A 3 GB 40131 U 3 ENGINEERED MUTATION SEQRES 1 A 107 GTP G C C G U G C U A A G C SEQRES 2 A 107 G G G G A G G U A G C G G SEQRES 3 A 107 U G C C C U G U A C C U G SEQRES 4 A 107 C A A U C C G C U C U A G SEQRES 5 A 107 C A G G G C C G A A U C C SEQRES 6 A 107 C U U C U C G A G G U U C SEQRES 7 A 107 G G U A A C G A A U C G A SEQRES 8 A 107 C A G A A G G U G C A C G SEQRES 9 A 107 G U CCC MODRES 4WFL GTP A 3 U MODIFIED RESIDUE HET GTP A 3 32 HET CCC A 109 23 HET MG A 201 1 HET NCO A 202 7 HET NCO A 203 7 HET MG A 204 1 HET NCO A 205 7 HET NCO A 206 7 HET NCO A 207 7 HET NCO A 208 7 HET NCO A 209 7 HET MG A 210 1 HET NCO A 211 7 HET NCO A 212 7 HET NCO A 213 7 HET NCO A 214 7 HET NCO A 215 7 HET NCO A 216 7 HET NCO A 217 7 HET NCO A 218 7 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NCO COBALT HEXAMMINE(III) FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC C9 H13 N3 O10 P2 FORMUL 2 MG 3(MG 2+) FORMUL 3 NCO 15(CO H18 N6 3+) FORMUL 20 HOH *46(H2 O) LINK O3' GTP A 3 P G A 4 1555 1555 1.59 LINK O3' U A 108 P CCC A 109 1555 1555 1.59 LINK O1G GTP A 3 MG MG A 201 1555 1555 1.97 LINK O3A GTP A 3 MG MG A 201 1555 1555 2.44 LINK O1A GTP A 3 MG MG A 201 1555 1555 2.71 LINK MG MG A 201 O HOH A 306 1555 2454 2.44 LINK MG MG A 201 O HOH A 320 1555 1555 2.23 LINK MG MG A 201 O HOH A 330 1555 1555 2.03 LINK MG MG A 204 O HOH A 304 1555 1555 2.18 LINK MG MG A 204 O HOH A 333 1555 1555 2.18 LINK MG MG A 204 O HOH A 338 1555 1555 2.18 LINK MG MG A 204 O HOH A 340 1555 1555 2.18 LINK MG MG A 204 O HOH A 344 1555 1555 2.18 LINK MG MG A 204 O HOH A 346 1555 1555 2.18 LINK MG MG A 210 O HOH A 305 1555 1555 2.18 LINK MG MG A 210 O HOH A 308 1555 1555 2.18 LINK MG MG A 210 O HOH A 341 1555 1555 2.18 LINK MG MG A 210 O HOH A 342 1555 1555 2.18 LINK MG MG A 210 O HOH A 343 1555 1555 2.18 LINK MG MG A 210 O HOH A 345 1555 1555 2.18 SITE 1 AC1 4 GTP A 3 HOH A 306 HOH A 320 HOH A 330 SITE 1 AC2 5 G A 14 C A 15 G A 16 C A 67 SITE 2 AC2 5 C A 68 SITE 1 AC3 5 G A 19 A A 20 G A 21 G A 22 SITE 2 AC3 5 HOH A 316 SITE 1 AC4 6 HOH A 333 HOH A 346 HOH A 304 HOH A 344 SITE 2 AC4 6 HOH A 340 HOH A 338 SITE 1 AC5 4 G A 17 G A 18 G A 28 U A 29 SITE 1 AC6 3 G A 57 G A 58 HOH A 336 SITE 1 AC7 3 G A 27 A A 53 G A 54 SITE 1 AC8 3 G A 81 G A 82 HOH A 303 SITE 1 AC9 8 GTP A 3 C A 5 A A 24 C A 105 SITE 2 AC9 8 G A 106 G A 107 U A 108 HOH A 307 SITE 1 AD1 6 HOH A 341 HOH A 345 HOH A 342 HOH A 305 SITE 2 AD1 6 HOH A 308 HOH A 343 SITE 1 AD2 5 U A 65 C A 66 A A 97 U A 108 SITE 2 AD2 5 CCC A 109 SITE 1 AD3 3 GTP A 3 C A 47 C A 103 SITE 1 AD4 4 C A 73 G A 74 G A 92 HOH A 317 SITE 1 AD5 6 G A 35 C A 51 U A 52 C A 94 SITE 2 AD5 6 A A 95 HOH A 314 SITE 1 AD6 4 A A 64 G A 100 U A 101 HOH A 327 SITE 1 AD7 7 G A 28 U A 29 U A 40 G A 41 SITE 2 AD7 7 C A 42 G A 54 HOH A 318 SITE 1 AD8 3 G A 21 U A 23 HOH A 316 SITE 1 AD9 4 C A 10 U A 11 C A 61 G A 62 CRYST1 62.466 68.283 82.991 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016009 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014645 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012049 0.00000 HETATM 1 PG GTP A 3 -12.870 17.683 -15.821 1.00 55.87 P HETATM 2 O1G GTP A 3 -13.513 16.880 -16.925 1.00 56.04 O HETATM 3 O2G GTP A 3 -12.161 18.879 -16.408 1.00 56.16 O HETATM 4 O3G GTP A 3 -13.927 18.147 -14.847 1.00 54.95 O HETATM 5 O3B GTP A 3 -11.794 16.760 -15.061 1.00 96.95 O HETATM 6 PB GTP A 3 -12.221 15.378 -14.355 1.00 51.65 P HETATM 7 O1B GTP A 3 -13.538 15.545 -13.636 1.00 51.10 O HETATM 8 O2B GTP A 3 -11.138 14.929 -13.404 1.00 52.22 O HETATM 9 O3A GTP A 3 -12.390 14.329 -15.564 1.00 50.13 O HETATM 10 PA GTP A 3 -11.312 14.159 -16.750 1.00 40.17 P HETATM 11 O1A GTP A 3 -12.028 14.203 -18.077 1.00 40.81 O HETATM 12 O2A GTP A 3 -10.232 15.212 -16.666 1.00 38.33 O HETATM 13 O5' GTP A 3 -10.678 12.700 -16.508 1.00 55.21 O HETATM 14 C5' GTP A 3 -9.509 12.481 -15.747 1.00 54.78 C HETATM 15 C4' GTP A 3 -9.243 10.978 -15.700 1.00 53.57 C HETATM 16 O4' GTP A 3 -10.399 10.362 -15.169 1.00 53.13 O HETATM 17 C3' GTP A 3 -8.998 10.350 -17.060 1.00 52.85 C HETATM 18 O3' GTP A 3 -8.113 9.277 -16.856 1.00 52.52 O HETATM 19 C2' GTP A 3 -10.331 9.748 -17.432 1.00 52.56 C HETATM 20 O2' GTP A 3 -10.158 8.576 -18.192 1.00 52.27 O HETATM 21 C1' GTP A 3 -10.962 9.445 -16.083 1.00 52.73 C HETATM 22 N9 GTP A 3 -12.408 9.696 -16.143 1.00 52.52 N HETATM 23 C8 GTP A 3 -13.041 10.871 -15.837 1.00 52.03 C HETATM 24 N7 GTP A 3 -14.371 10.699 -16.010 1.00 52.22 N HETATM 25 C5 GTP A 3 -14.592 9.427 -16.409 1.00 52.53 C HETATM 26 C6 GTP A 3 -15.752 8.731 -16.719 1.00 52.31 C HETATM 27 O6 GTP A 3 -16.845 9.289 -16.649 1.00 51.06 O HETATM 28 N1 GTP A 3 -15.666 7.409 -17.106 1.00 53.54 N HETATM 29 C2 GTP A 3 -14.435 6.789 -17.182 1.00 54.52 C HETATM 30 N2 GTP A 3 -14.355 5.515 -17.555 1.00 55.27 N HETATM 31 N3 GTP A 3 -13.287 7.486 -16.873 1.00 54.12 N HETATM 32 C4 GTP A 3 -13.365 8.783 -16.493 1.00 53.08 C