HEADER RNA 15-SEP-14 4WFM TITLE STRUCTURE OF THE COMPLETE BACTERIAL SRP ALU DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACILLUS SUBTILIS SMALL CYTOPLASMIC RNA (SCRNA),RNA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 4 ORGANISM_TAXID: 224308 KEYWDS NON-CODING, RNA, SRP RNA, ELONGATION ARREST EXPDTA X-RAY DIFFRACTION AUTHOR G.KEMPF,K.WILD,I.SINNING REVDAT 4 08-MAY-24 4WFM 1 LINK REVDAT 3 06-SEP-17 4WFM 1 LINK SITE ATOM REVDAT 2 19-NOV-14 4WFM 1 JRNL REVDAT 1 15-OCT-14 4WFM 0 JRNL AUTH G.KEMPF,K.WILD,I.SINNING JRNL TITL STRUCTURE OF THE COMPLETE BACTERIAL SRP ALU DOMAIN. JRNL REF NUCLEIC ACIDS RES. V. 42 12284 2014 JRNL REFN ESSN 1362-4962 JRNL PMID 25270875 JRNL DOI 10.1093/NAR/GKU883 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 26238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.710 REMARK 3 FREE R VALUE TEST SET COUNT : 4830 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5523 - 9.5969 0.98 1481 148 0.1295 0.1342 REMARK 3 2 9.5969 - 7.6317 1.00 1489 175 0.1557 0.1715 REMARK 3 3 7.6317 - 6.6712 0.99 1477 183 0.1345 0.1526 REMARK 3 4 6.6712 - 6.0631 1.00 1521 143 0.1463 0.1388 REMARK 3 5 6.0631 - 5.6296 1.00 1481 179 0.1481 0.1843 REMARK 3 6 5.6296 - 5.2983 1.00 1525 135 0.1465 0.1796 REMARK 3 7 5.2983 - 5.0334 0.99 1471 174 0.1543 0.1355 REMARK 3 8 5.0334 - 4.8146 1.00 1500 161 0.1714 0.1707 REMARK 3 9 4.8146 - 4.6295 1.00 1497 157 0.1702 0.2018 REMARK 3 10 4.6295 - 4.4699 1.00 1553 141 0.1607 0.1877 REMARK 3 11 4.4699 - 4.3303 1.00 1427 175 0.1649 0.1869 REMARK 3 12 4.3303 - 4.2066 1.00 1548 156 0.1800 0.2221 REMARK 3 13 4.2066 - 4.0960 0.99 1479 144 0.1820 0.2251 REMARK 3 14 4.0960 - 3.9961 1.00 1468 199 0.1929 0.1857 REMARK 3 15 3.9961 - 3.9053 1.00 1513 151 0.1882 0.2251 REMARK 3 16 3.9053 - 3.8223 1.00 1504 165 0.2042 0.2507 REMARK 3 17 3.8223 - 3.7459 0.99 1483 163 0.2255 0.2483 REMARK 3 18 3.7459 - 3.6752 1.00 1509 155 0.2400 0.2879 REMARK 3 19 3.6752 - 3.6096 1.00 1495 143 0.2369 0.2265 REMARK 3 20 3.6096 - 3.5485 0.99 1497 174 0.2463 0.2766 REMARK 3 21 3.5485 - 3.4913 1.00 1570 158 0.2541 0.2656 REMARK 3 22 3.4913 - 3.4376 0.99 1452 162 0.2683 0.3045 REMARK 3 23 3.4376 - 3.3870 1.00 1503 152 0.2754 0.3099 REMARK 3 24 3.3870 - 3.3393 1.00 1491 173 0.2859 0.3116 REMARK 3 25 3.3393 - 3.2942 0.99 1474 150 0.2773 0.2875 REMARK 3 26 3.2942 - 3.2515 1.00 1521 179 0.2999 0.3043 REMARK 3 27 3.2515 - 3.2108 1.00 1507 157 0.2996 0.3208 REMARK 3 28 3.2108 - 3.1722 0.99 1487 155 0.3156 0.3094 REMARK 3 29 3.1722 - 3.1353 0.99 1503 171 0.3462 0.3319 REMARK 3 30 3.1353 - 3.1001 1.00 1479 152 0.3959 0.3879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5094 REMARK 3 ANGLE : 0.524 8077 REMARK 3 CHIRALITY : 0.022 1028 REMARK 3 PLANARITY : 0.002 206 REMARK 3 DIHEDRAL : 17.082 2470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2513 -40.8957 1.9828 REMARK 3 T TENSOR REMARK 3 T11: 0.6403 T22: 1.3215 REMARK 3 T33: 0.9725 T12: 0.0270 REMARK 3 T13: -0.2368 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 2.4467 L22: 1.5274 REMARK 3 L33: 1.7345 L12: 0.0621 REMARK 3 L13: 0.6213 L23: -0.5067 REMARK 3 S TENSOR REMARK 3 S11: 0.0971 S12: -0.4580 S13: -1.2538 REMARK 3 S21: -0.4411 S22: 0.6832 S23: -0.0210 REMARK 3 S31: -0.3993 S32: -0.2809 S33: -0.5923 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7969 -34.7433 -20.7308 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.7948 REMARK 3 T33: 0.5628 T12: -0.2477 REMARK 3 T13: -0.0919 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.6466 L22: 2.3492 REMARK 3 L33: 1.8251 L12: -0.9121 REMARK 3 L13: 0.1233 L23: -0.2876 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: 0.0628 S13: -0.2811 REMARK 3 S21: -0.2530 S22: 0.1325 S23: -0.0135 REMARK 3 S31: -0.2460 S32: 1.0374 S33: -0.0212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.3840 -45.4102 -18.6127 REMARK 3 T TENSOR REMARK 3 T11: 0.5001 T22: 0.7232 REMARK 3 T33: 0.6766 T12: -0.2915 REMARK 3 T13: -0.0799 T23: 0.1139 REMARK 3 L TENSOR REMARK 3 L11: 2.9141 L22: 2.8127 REMARK 3 L33: 2.9729 L12: -1.4262 REMARK 3 L13: -1.3975 L23: 0.7362 REMARK 3 S TENSOR REMARK 3 S11: 0.3792 S12: -0.3557 S13: -0.8045 REMARK 3 S21: -0.1119 S22: 0.4641 S23: 0.3001 REMARK 3 S31: 0.5914 S32: 0.6847 S33: -0.5273 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3727 -32.9330 -10.7670 REMARK 3 T TENSOR REMARK 3 T11: 0.8007 T22: 0.9889 REMARK 3 T33: 0.7645 T12: -0.0562 REMARK 3 T13: -0.2260 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.6725 L22: 0.7143 REMARK 3 L33: 1.2937 L12: 0.5774 REMARK 3 L13: 0.2605 L23: -0.2439 REMARK 3 S TENSOR REMARK 3 S11: -0.3046 S12: -0.4266 S13: -0.0003 REMARK 3 S21: 0.5257 S22: 0.2894 S23: -0.7267 REMARK 3 S31: -0.5953 S32: 0.8415 S33: -0.0166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.6036 -10.5059 -18.3068 REMARK 3 T TENSOR REMARK 3 T11: 1.2196 T22: 0.5118 REMARK 3 T33: 0.7728 T12: -0.1257 REMARK 3 T13: -0.2111 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 2.3544 L22: 0.1086 REMARK 3 L33: 2.4398 L12: 0.5174 REMARK 3 L13: 2.3971 L23: 0.5220 REMARK 3 S TENSOR REMARK 3 S11: -0.3128 S12: -0.0787 S13: -0.5231 REMARK 3 S21: -0.7008 S22: 0.3705 S23: -0.1617 REMARK 3 S31: -0.6672 S32: -0.3053 S33: 0.0671 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2761 -23.2741 -4.2276 REMARK 3 T TENSOR REMARK 3 T11: 1.0115 T22: 0.9201 REMARK 3 T33: 0.5879 T12: -0.1105 REMARK 3 T13: -0.2626 T23: -0.1074 REMARK 3 L TENSOR REMARK 3 L11: 1.7276 L22: 1.3488 REMARK 3 L33: 1.6550 L12: -0.3647 REMARK 3 L13: -0.2166 L23: -0.9976 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: -0.3108 S13: 0.0719 REMARK 3 S21: 0.7498 S22: 0.1917 S23: -0.1674 REMARK 3 S31: -0.8590 S32: 1.0300 S33: -0.0422 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4328 -44.6795 9.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.8134 T22: 1.6151 REMARK 3 T33: 1.2019 T12: -0.0724 REMARK 3 T13: -0.2237 T23: 0.1456 REMARK 3 L TENSOR REMARK 3 L11: -0.0091 L22: 0.0401 REMARK 3 L33: 0.0048 L12: 0.0096 REMARK 3 L13: 0.0468 L23: 0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.0611 S12: -0.4426 S13: -0.8182 REMARK 3 S21: -0.3297 S22: 0.7215 S23: 0.2756 REMARK 3 S31: -0.0874 S32: -0.2256 S33: -0.4132 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2848 -90.2499 -24.2460 REMARK 3 T TENSOR REMARK 3 T11: 1.0706 T22: 0.5641 REMARK 3 T33: 0.9773 T12: 0.0708 REMARK 3 T13: -0.0449 T23: -0.2059 REMARK 3 L TENSOR REMARK 3 L11: 0.7225 L22: 1.1550 REMARK 3 L33: 1.5309 L12: -0.3337 REMARK 3 L13: -0.2519 L23: 1.2394 REMARK 3 S TENSOR REMARK 3 S11: 0.4865 S12: -0.2321 S13: 0.0679 REMARK 3 S21: -0.6367 S22: 0.3766 S23: -1.7046 REMARK 3 S31: -0.2325 S32: 0.4680 S33: -0.6920 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.6950 -66.0495 -4.8804 REMARK 3 T TENSOR REMARK 3 T11: 0.5996 T22: 0.4175 REMARK 3 T33: 0.5625 T12: -0.0975 REMARK 3 T13: 0.0168 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 3.1949 L22: 3.0816 REMARK 3 L33: 1.3264 L12: 1.2516 REMARK 3 L13: -0.2989 L23: 0.9595 REMARK 3 S TENSOR REMARK 3 S11: 0.0769 S12: 0.3116 S13: 0.0160 REMARK 3 S21: 0.0596 S22: 0.1084 S23: -0.1787 REMARK 3 S31: 0.3310 S32: 0.0947 S33: -0.1704 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 64 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.5343 -69.1009 -10.0612 REMARK 3 T TENSOR REMARK 3 T11: 0.6211 T22: 0.9788 REMARK 3 T33: 0.6245 T12: -0.0562 REMARK 3 T13: 0.0414 T23: -0.1439 REMARK 3 L TENSOR REMARK 3 L11: 2.1779 L22: 0.7723 REMARK 3 L33: 1.6237 L12: 1.2600 REMARK 3 L13: -0.1470 L23: 0.1997 REMARK 3 S TENSOR REMARK 3 S11: 0.1646 S12: 0.3641 S13: -0.1048 REMARK 3 S21: 0.0877 S22: -0.2824 S23: 0.3678 REMARK 3 S31: 0.2595 S32: -0.7583 S33: 0.1100 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.3824 -87.5663 -25.1009 REMARK 3 T TENSOR REMARK 3 T11: 1.0162 T22: 0.9381 REMARK 3 T33: 0.9128 T12: -0.0049 REMARK 3 T13: 0.0496 T23: -0.3451 REMARK 3 L TENSOR REMARK 3 L11: -0.3030 L22: 0.9404 REMARK 3 L33: 0.6194 L12: -0.0716 REMARK 3 L13: -0.2579 L23: 0.3437 REMARK 3 S TENSOR REMARK 3 S11: 0.3481 S12: 0.2124 S13: 0.0322 REMARK 3 S21: -0.3398 S22: -0.2593 S23: -0.3898 REMARK 3 S31: -0.1473 S32: -0.2470 S33: -0.3283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26252 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, MGCL2, SODIUM REMARK 280 FORMATE, LISO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.49600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.49600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 88.12700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.17250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 88.12700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.17250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.49600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 88.12700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.17250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.49600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 88.12700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.17250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C B 15 OP1 C B 38 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 4 O3' - P - O5' ANGL. DEV. = -15.4 DEGREES REMARK 500 G A 4 O3' - P - OP2 ANGL. DEV. = 7.3 DEGREES REMARK 500 C A 84 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 C A 84 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 G B 4 O3' - P - O5' ANGL. DEV. = -26.6 DEGREES REMARK 500 G B 4 O3' - P - OP1 ANGL. DEV. = 12.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 212 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP B 3 O3G REMARK 620 2 GTP B 3 O2A 80.0 REMARK 620 3 HOH B 303 O 127.7 151.9 REMARK 620 4 HOH B 304 O 94.6 90.3 84.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NCO B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 212 DBREF 4WFM A 4 78 GB 40131 X06802.1 4 78 DBREF 4WFM A 79 105 PDB 4WFM 4WFM 79 105 DBREF 4WFM B 4 78 GB 40131 X06802.1 4 78 DBREF 4WFM B 79 105 PDB 4WFM 4WFM 79 105 SEQADV 4WFM GTP A 3 GB 40131 ENGINEERED MUTATION SEQADV 4WFM GTP B 3 GB 40131 ENGINEERED MUTATION SEQRES 1 A 103 GTP G C C G U G C U A A G C SEQRES 2 A 103 G G G G A G G U A G C G G SEQRES 3 A 103 U G C C C U G U A C C U G SEQRES 4 A 103 C A A U C C G C U C U A G SEQRES 5 A 103 C A G G G C C G A A U C C SEQRES 6 A 103 C U U C U C G A G G U G G SEQRES 7 A 103 U A A C A U C G A C A G A SEQRES 8 A 103 A G G U G C A C G G U CCC SEQRES 1 B 103 GTP G C C G U G C U A A G C SEQRES 2 B 103 G G G G A G G U A G C G G SEQRES 3 B 103 U G C C C U G U A C C U G SEQRES 4 B 103 C A A U C C G C U C U A G SEQRES 5 B 103 C A G G G C C G A A U C C SEQRES 6 B 103 C U U C U C G A G G U G G SEQRES 7 B 103 U A A C A U C G A C A G A SEQRES 8 B 103 A G G U G C A C G G U CCC HET GTP A 3 32 HET CCC A 105 23 HET GTP B 3 32 HET CCC B 105 23 HET NCO A 201 7 HET NCO A 202 7 HET NCO A 203 7 HET NCO A 204 7 HET NCO A 205 7 HET NCO A 206 7 HET NCO A 207 7 HET NCO A 208 7 HET NCO A 209 7 HET NCO A 210 7 HET NCO A 211 7 HET NCO A 212 7 HET NCO B 201 7 HET NCO B 202 7 HET NCO B 203 7 HET NCO B 204 7 HET NCO B 205 7 HET NCO B 206 7 HET NCO B 207 7 HET NCO B 208 7 HET NCO B 209 7 HET NCO B 210 7 HET NCO B 211 7 HET MG B 212 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM NCO COBALT HEXAMMINE(III) HETNAM MG MAGNESIUM ION FORMUL 1 GTP 2(C10 H16 N5 O14 P3) FORMUL 1 CCC 2(C9 H13 N3 O10 P2) FORMUL 3 NCO 23(CO H18 N6 3+) FORMUL 26 MG MG 2+ FORMUL 27 HOH *4(H2 O) LINK O3' GTP A 3 P G A 4 1555 1555 1.59 LINK O3' U A 104 P CCC A 105 1555 1555 1.59 LINK O3' GTP B 3 P G B 4 1555 1555 1.60 LINK O3' U B 104 P CCC B 105 1555 1555 1.59 LINK O3G GTP B 3 MG MG B 212 1555 1555 2.29 LINK O2A GTP B 3 MG MG B 212 1555 1555 2.19 LINK MG MG B 212 O HOH B 303 1555 1555 2.08 LINK MG MG B 212 O HOH B 304 1555 1555 2.42 SITE 1 AC1 3 A A 64 G A 96 U A 97 SITE 1 AC2 2 G A 57 G A 58 SITE 1 AC3 4 G A 17 G A 18 G A 28 U A 29 SITE 1 AC4 4 C A 10 U A 11 C A 61 G A 62 SITE 1 AC5 3 G A 7 U A 8 A A 64 SITE 1 AC6 3 C A 73 G A 74 G A 88 SITE 1 AC7 4 U A 78 G A 79 G A 80 A A 82 SITE 1 AC8 5 C A 31 C A 32 C B 33 U B 34 SITE 2 AC8 5 G B 35 SITE 1 AC9 4 GTP A 3 C A 5 G A 103 U A 104 SITE 1 AD1 3 A A 20 G A 21 G A 22 SITE 1 AD2 5 G A 14 C A 15 G A 16 C A 67 SITE 2 AD2 5 C A 68 SITE 1 AD3 3 C A 26 A A 53 G A 54 SITE 1 AD4 3 G B 57 G B 58 G B 59 SITE 1 AD5 3 U B 11 C B 61 G B 62 SITE 1 AD6 4 G B 7 U B 8 A B 63 A B 64 SITE 1 AD7 2 G B 96 U B 97 SITE 1 AD8 5 G B 17 G B 18 G B 28 U B 29 SITE 2 AD8 5 NCO B 211 SITE 1 AD9 3 C B 73 G B 74 G B 88 SITE 1 AE1 5 GTP B 3 G B 4 C B 5 G B 103 SITE 2 AE1 5 U B 104 SITE 1 AE2 3 A B 20 G B 21 G B 22 SITE 1 AE3 4 GTP B 3 MG B 212 HOH B 301 HOH B 302 SITE 1 AE4 4 C B 15 G B 16 C B 67 C B 68 SITE 1 AE5 4 G B 16 G B 17 U B 34 NCO B 205 SITE 1 AE6 4 GTP B 3 NCO B 209 HOH B 304 HOH B 303 CRYST1 176.254 194.345 82.992 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012049 0.00000 HETATM 1 PG GTP A 3 -4.145 -43.660 18.927 1.00167.12 P HETATM 2 O1G GTP A 3 -5.104 -43.666 17.760 1.00167.14 O HETATM 3 O2G GTP A 3 -3.675 -45.065 19.221 1.00166.98 O HETATM 4 O3G GTP A 3 -2.940 -42.812 18.593 1.00166.94 O HETATM 5 O3B GTP A 3 -4.890 -43.074 20.233 1.00184.07 O HETATM 6 PB GTP A 3 -6.473 -42.750 20.278 1.00161.68 P HETATM 7 O1B GTP A 3 -7.268 -44.031 20.183 1.00161.60 O HETATM 8 O2B GTP A 3 -6.773 -42.046 21.580 1.00161.39 O HETATM 9 O3A GTP A 3 -6.839 -41.744 19.065 1.00146.43 O HETATM 10 PA GTP A 3 -5.823 -40.563 18.661 1.00144.79 P HETATM 11 O1A GTP A 3 -4.992 -40.909 17.449 1.00144.71 O HETATM 12 O2A GTP A 3 -4.982 -40.300 19.882 1.00145.04 O HETATM 13 O5' GTP A 3 -6.715 -39.259 18.358 1.00144.07 O HETATM 14 C5' GTP A 3 -7.090 -38.415 19.424 1.00144.09 C HETATM 15 C4' GTP A 3 -6.128 -37.233 19.549 1.00144.09 C HETATM 16 O4' GTP A 3 -4.990 -37.560 20.327 1.00144.24 O HETATM 17 C3' GTP A 3 -5.512 -36.793 18.234 1.00144.04 C HETATM 18 O3' GTP A 3 -6.364 -36.019 17.422 1.00144.45 O HETATM 19 C2' GTP A 3 -4.283 -36.030 18.690 1.00143.55 C HETATM 20 O2' GTP A 3 -4.591 -34.682 18.960 1.00142.61 O HETATM 21 C1' GTP A 3 -3.889 -36.733 19.977 1.00144.23 C HETATM 22 N9 GTP A 3 -2.679 -37.529 19.685 1.00144.68 N HETATM 23 C8 GTP A 3 -2.591 -38.894 19.644 1.00144.94 C HETATM 24 N7 GTP A 3 -1.328 -39.259 19.346 1.00144.69 N HETATM 25 C5 GTP A 3 -0.594 -38.140 19.202 1.00144.60 C HETATM 26 C6 GTP A 3 0.745 -37.953 18.902 1.00144.93 C HETATM 27 O6 GTP A 3 1.472 -38.926 18.718 1.00146.98 O HETATM 28 N1 GTP A 3 1.250 -36.674 18.814 1.00144.45 N HETATM 29 C2 GTP A 3 0.419 -35.594 19.027 1.00144.40 C HETATM 30 N2 GTP A 3 0.912 -34.362 18.939 1.00144.57 N HETATM 31 N3 GTP A 3 -0.917 -35.787 19.324 1.00144.46 N HETATM 32 C4 GTP A 3 -1.422 -37.043 19.412 1.00144.61 C