HEADER OXIDOREDUCTASE 16-SEP-14 4WFO TITLE MANGANESE-SUBSTITUTED SOYBEAN LIPOXYGENASE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEED LINOLEATE 13S-LIPOXYGENASE-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIPOXYGENASE-1,L-1; COMPND 5 EC: 1.13.11.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: LOX1.1, LOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LIPOXYGENASE, MANGANESE, METAL SUBSTITUTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.M.CARR,A.D.SCOURAS,J.P.KLINMAN REVDAT 4 27-SEP-23 4WFO 1 REMARK REVDAT 3 27-NOV-19 4WFO 1 REMARK REVDAT 2 27-SEP-17 4WFO 1 REMARK REVDAT 1 30-SEP-15 4WFO 0 JRNL AUTH C.A.M.CARR,M.HORITANI,A.R.OFFENBACHER,M.W.KNITZ,J.P.KLINMAN, JRNL AUTH 2 B.M.HOFFMAN JRNL TITL DIRECT DETECTION OF ACTIVE-SITE GEOMETRIES IN SOYBEAN JRNL TITL 2 LIPOXYGENASE-1 BY ENDOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 268091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.108 REMARK 3 FREE R VALUE : 0.128 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 90.9768 - 2.6805 0.99 21902 148 0.1136 0.1332 REMARK 3 2 2.6805 - 2.1275 0.99 21644 148 0.0999 0.1036 REMARK 3 3 2.1275 - 1.8586 0.99 21599 144 0.0862 0.1087 REMARK 3 4 1.8586 - 1.6886 0.99 21498 163 0.0821 0.1107 REMARK 3 5 1.6886 - 1.5676 0.98 21357 160 0.0801 0.1005 REMARK 3 6 1.5676 - 1.4752 0.98 21312 146 0.0859 0.1151 REMARK 3 7 1.4752 - 1.4013 0.98 21238 152 0.1022 0.1350 REMARK 3 8 1.4013 - 1.3403 0.97 21081 150 0.1098 0.1251 REMARK 3 9 1.3403 - 1.2887 0.97 21124 154 0.1235 0.1409 REMARK 3 10 1.2887 - 1.2442 0.97 20980 152 0.1409 0.1674 REMARK 3 11 1.2442 - 1.2053 0.95 20667 150 0.1656 0.1848 REMARK 3 12 1.2053 - 1.1708 0.80 17465 126 0.1960 0.2338 REMARK 3 13 1.1708 - 1.1400 0.66 14336 95 0.2235 0.2628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7426 REMARK 3 ANGLE : 1.083 10147 REMARK 3 CHIRALITY : 0.083 1089 REMARK 3 PLANARITY : 0.009 1351 REMARK 3 DIHEDRAL : 13.012 2814 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000200221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 268145 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 90.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3PZW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% PEG3350, 200 MM SODIUM ACETATE, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.74850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 22 REMARK 465 ASN A 23 REMARK 465 PRO A 24 REMARK 465 ASP A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 ALA A 28 REMARK 465 VAL A 29 REMARK 465 ASP A 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1477 O HOH A 1735 2.00 REMARK 500 O HOH A 1647 O HOH A 1805 2.09 REMARK 500 O HOH A 1111 O HOH A 1221 2.13 REMARK 500 O HOH A 1035 O HOH A 1269 2.13 REMARK 500 O HOH A 1808 O HOH A 2040 2.14 REMARK 500 O HOH A 1869 O HOH A 1874 2.16 REMARK 500 O HOH A 1432 O HOH A 1979 2.18 REMARK 500 O HOH A 1294 O HOH A 1756 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 36 -157.80 -87.66 REMARK 500 ARG A 38 32.22 -99.10 REMARK 500 PRO A 72 89.12 -68.07 REMARK 500 THR A 73 100.49 36.79 REMARK 500 TRP A 87 89.79 -165.57 REMARK 500 ILE A 265 -56.34 -123.36 REMARK 500 GLU A 294 -95.05 -101.44 REMARK 500 VAL A 312 -56.73 73.39 REMARK 500 GLN A 322 -52.98 -129.64 REMARK 500 GLN A 322 -54.80 -129.64 REMARK 500 ALA A 352 14.61 -145.91 REMARK 500 LEU A 390 40.39 -103.81 REMARK 500 SER A 455 15.57 -68.43 REMARK 500 ALA A 456 -61.74 59.08 REMARK 500 ASP A 458 15.94 168.28 REMARK 500 LEU A 459 -164.75 -69.90 REMARK 500 SER A 460 -93.48 -125.71 REMARK 500 ALA A 461 -23.93 -156.92 REMARK 500 MET A 497 -64.17 -108.70 REMARK 500 HIS A 499 -74.53 -97.13 REMARK 500 THR A 503 -86.37 -114.59 REMARK 500 ASN A 534 -0.12 74.17 REMARK 500 ASN A 534 -0.12 74.42 REMARK 500 SER A 560 -130.19 53.88 REMARK 500 ASP A 607 68.62 -101.02 REMARK 500 SER A 687 -85.50 -106.99 REMARK 500 ASN A 729 73.72 -153.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1660 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A2046 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 901 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 499 NE2 REMARK 620 2 HIS A 504 NE2 91.8 REMARK 620 3 HIS A 690 NE2 101.4 98.0 REMARK 620 4 ASN A 694 OD1 85.7 172.7 89.3 REMARK 620 5 ILE A 839 OXT 170.4 90.5 87.5 90.9 REMARK 620 6 HOH A1308 O 85.1 91.4 168.4 81.5 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 912 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 913 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 914 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 915 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PZW RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN WITH NATIVE IRON LIGAND DBREF 4WFO A 1 839 UNP P08170 LOX1_SOYBN 1 839 SEQADV 4WFO MET A -18 UNP P08170 EXPRESSION TAG SEQADV 4WFO GLY A -17 UNP P08170 EXPRESSION TAG SEQADV 4WFO SER A -16 UNP P08170 EXPRESSION TAG SEQADV 4WFO SER A -15 UNP P08170 EXPRESSION TAG SEQADV 4WFO HIS A -14 UNP P08170 EXPRESSION TAG SEQADV 4WFO HIS A -13 UNP P08170 EXPRESSION TAG SEQADV 4WFO HIS A -12 UNP P08170 EXPRESSION TAG SEQADV 4WFO HIS A -11 UNP P08170 EXPRESSION TAG SEQADV 4WFO HIS A -10 UNP P08170 EXPRESSION TAG SEQADV 4WFO HIS A -9 UNP P08170 EXPRESSION TAG SEQADV 4WFO GLU A -8 UNP P08170 EXPRESSION TAG SEQADV 4WFO ASN A -7 UNP P08170 EXPRESSION TAG SEQADV 4WFO LEU A -6 UNP P08170 EXPRESSION TAG SEQADV 4WFO TYR A -5 UNP P08170 EXPRESSION TAG SEQADV 4WFO PHE A -4 UNP P08170 EXPRESSION TAG SEQADV 4WFO GLN A -3 UNP P08170 EXPRESSION TAG SEQADV 4WFO SER A -2 UNP P08170 EXPRESSION TAG SEQADV 4WFO ASN A -1 UNP P08170 EXPRESSION TAG SEQADV 4WFO ALA A 0 UNP P08170 EXPRESSION TAG SEQADV 4WFO GLU A 160 UNP P08170 SER 160 VARIANT SEQRES 1 A 858 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 858 TYR PHE GLN SER ASN ALA MET PHE SER ALA GLY HIS LYS SEQRES 3 A 858 ILE LYS GLY THR VAL VAL LEU MET PRO LYS ASN GLU LEU SEQRES 4 A 858 GLU VAL ASN PRO ASP GLY SER ALA VAL ASP ASN LEU ASN SEQRES 5 A 858 ALA PHE LEU GLY ARG SER VAL SER LEU GLN LEU ILE SER SEQRES 6 A 858 ALA THR LYS ALA ASP ALA HIS GLY LYS GLY LYS VAL GLY SEQRES 7 A 858 LYS ASP THR PHE LEU GLU GLY ILE ASN THR SER LEU PRO SEQRES 8 A 858 THR LEU GLY ALA GLY GLU SER ALA PHE ASN ILE HIS PHE SEQRES 9 A 858 GLU TRP ASP GLY SER MET GLY ILE PRO GLY ALA PHE TYR SEQRES 10 A 858 ILE LYS ASN TYR MET GLN VAL GLU PHE PHE LEU LYS SER SEQRES 11 A 858 LEU THR LEU GLU ALA ILE SER ASN GLN GLY THR ILE ARG SEQRES 12 A 858 PHE VAL CYS ASN SER TRP VAL TYR ASN THR LYS LEU TYR SEQRES 13 A 858 LYS SER VAL ARG ILE PHE PHE ALA ASN HIS THR TYR VAL SEQRES 14 A 858 PRO SER GLU THR PRO ALA PRO LEU VAL GLU TYR ARG GLU SEQRES 15 A 858 GLU GLU LEU LYS SER LEU ARG GLY ASN GLY THR GLY GLU SEQRES 16 A 858 ARG LYS GLU TYR ASP ARG ILE TYR ASP TYR ASP VAL TYR SEQRES 17 A 858 ASN ASP LEU GLY ASN PRO ASP LYS SER GLU LYS LEU ALA SEQRES 18 A 858 ARG PRO VAL LEU GLY GLY SER SER THR PHE PRO TYR PRO SEQRES 19 A 858 ARG ARG GLY ARG THR GLY ARG GLY PRO THR VAL THR ASP SEQRES 20 A 858 PRO ASN THR GLU LYS GLN GLY GLU VAL PHE TYR VAL PRO SEQRES 21 A 858 ARG ASP GLU ASN LEU GLY HIS LEU LYS SER LYS ASP ALA SEQRES 22 A 858 LEU GLU ILE GLY THR LYS SER LEU SER GLN ILE VAL GLN SEQRES 23 A 858 PRO ALA PHE GLU SER ALA PHE ASP LEU LYS SER THR PRO SEQRES 24 A 858 ILE GLU PHE HIS SER PHE GLN ASP VAL HIS ASP LEU TYR SEQRES 25 A 858 GLU GLY GLY ILE LYS LEU PRO ARG ASP VAL ILE SER THR SEQRES 26 A 858 ILE ILE PRO LEU PRO VAL ILE LYS GLU LEU TYR ARG THR SEQRES 27 A 858 ASP GLY GLN HIS ILE LEU LYS PHE PRO GLN PRO HIS VAL SEQRES 28 A 858 VAL GLN VAL SER GLN SER ALA TRP MET THR ASP GLU GLU SEQRES 29 A 858 PHE ALA ARG GLU MET ILE ALA GLY VAL ASN PRO CYS VAL SEQRES 30 A 858 ILE ARG GLY LEU GLU GLU PHE PRO PRO LYS SER ASN LEU SEQRES 31 A 858 ASP PRO ALA ILE TYR GLY ASP GLN SER SER LYS ILE THR SEQRES 32 A 858 ALA ASP SER LEU ASP LEU ASP GLY TYR THR MET ASP GLU SEQRES 33 A 858 ALA LEU GLY SER ARG ARG LEU PHE MET LEU ASP TYR HIS SEQRES 34 A 858 ASP ILE PHE MET PRO TYR VAL ARG GLN ILE ASN GLN LEU SEQRES 35 A 858 ASN SER ALA LYS THR TYR ALA THR ARG THR ILE LEU PHE SEQRES 36 A 858 LEU ARG GLU ASP GLY THR LEU LYS PRO VAL ALA ILE GLU SEQRES 37 A 858 LEU SER LEU PRO HIS SER ALA GLY ASP LEU SER ALA ALA SEQRES 38 A 858 VAL SER GLN VAL VAL LEU PRO ALA LYS GLU GLY VAL GLU SEQRES 39 A 858 SER THR ILE TRP LEU LEU ALA LYS ALA TYR VAL ILE VAL SEQRES 40 A 858 ASN ASP SER CYS TYR HIS GLN LEU MET SER HIS TRP LEU SEQRES 41 A 858 ASN THR HIS ALA ALA MET GLU PRO PHE VAL ILE ALA THR SEQRES 42 A 858 HIS ARG HIS LEU SER VAL LEU HIS PRO ILE TYR LYS LEU SEQRES 43 A 858 LEU THR PRO HIS TYR ARG ASN ASN MET ASN ILE ASN ALA SEQRES 44 A 858 LEU ALA ARG GLN SER LEU ILE ASN ALA ASN GLY ILE ILE SEQRES 45 A 858 GLU THR THR PHE LEU PRO SER LYS TYR SER VAL GLU MET SEQRES 46 A 858 SER SER ALA VAL TYR LYS ASN TRP VAL PHE THR ASP GLN SEQRES 47 A 858 ALA LEU PRO ALA ASP LEU ILE LYS ARG GLY VAL ALA ILE SEQRES 48 A 858 LYS ASP PRO SER THR PRO HIS GLY VAL ARG LEU LEU ILE SEQRES 49 A 858 GLU ASP TYR PRO TYR ALA ALA ASP GLY LEU GLU ILE TRP SEQRES 50 A 858 ALA ALA ILE LYS THR TRP VAL GLN GLU TYR VAL PRO LEU SEQRES 51 A 858 TYR TYR ALA ARG ASP ASP ASP VAL LYS ASN ASP SER GLU SEQRES 52 A 858 LEU GLN HIS TRP TRP LYS GLU ALA VAL GLU LYS GLY HIS SEQRES 53 A 858 GLY ASP LEU LYS ASP LYS PRO TRP TRP PRO LYS LEU GLN SEQRES 54 A 858 THR LEU GLU ASP LEU VAL GLU VAL CYS LEU ILE ILE ILE SEQRES 55 A 858 TRP ILE ALA SER ALA LEU HIS ALA ALA VAL ASN PHE GLY SEQRES 56 A 858 GLN TYR PRO TYR GLY GLY LEU ILE MET ASN ARG PRO THR SEQRES 57 A 858 ALA SER ARG ARG LEU LEU PRO GLU LYS GLY THR PRO GLU SEQRES 58 A 858 TYR GLU GLU MET ILE ASN ASN HIS GLU LYS ALA TYR LEU SEQRES 59 A 858 ARG THR ILE THR SER LYS LEU PRO THR LEU ILE SER LEU SEQRES 60 A 858 SER VAL ILE GLU ILE LEU SER THR HIS ALA SER ASP GLU SEQRES 61 A 858 VAL TYR LEU GLY GLN ARG ASP ASN PRO HIS TRP THR SER SEQRES 62 A 858 ASP SER LYS ALA LEU GLN ALA PHE GLN LYS PHE GLY ASN SEQRES 63 A 858 LYS LEU LYS GLU ILE GLU GLU LYS LEU VAL ARG ARG ASN SEQRES 64 A 858 ASN ASP PRO SER LEU GLN GLY ASN ARG LEU GLY PRO VAL SEQRES 65 A 858 GLN LEU PRO TYR THR LEU LEU TYR PRO SER SER GLU GLU SEQRES 66 A 858 GLY LEU THR PHE ARG GLY ILE PRO ASN SER ILE SER ILE HET MN A 901 1 HET EDO A 902 10 HET EDO A 903 10 HET EDO A 904 10 HET EDO A 905 10 HET EDO A 906 10 HET EDO A 907 10 HET EDO A 908 10 HET EDO A 909 10 HET ACT A 910 7 HET ACT A 911 7 HET ACT A 912 7 HET ACT A 913 7 HET ACT A 914 7 HET ACT A 915 7 HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN MN 2+ FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 ACT 6(C2 H3 O2 1-) FORMUL 17 HOH *1151(H2 O) HELIX 1 AA1 ASN A 18 LEU A 20 5 3 HELIX 2 AA2 ASN A 31 LEU A 36 5 6 HELIX 3 AA3 ASP A 88 GLY A 92 5 5 HELIX 4 AA4 SER A 118 THR A 122 5 5 HELIX 5 AA5 ASN A 133 TYR A 137 5 5 HELIX 6 AA6 VAL A 150 THR A 154 5 5 HELIX 7 AA7 PRO A 155 PRO A 157 5 3 HELIX 8 AA8 LEU A 158 GLY A 171 1 14 HELIX 9 AA9 SER A 198 ALA A 202 5 5 HELIX 10 AB1 PRO A 241 ASN A 245 5 5 HELIX 11 AB2 LYS A 250 GLU A 256 5 7 HELIX 12 AB3 ILE A 257 ILE A 265 1 9 HELIX 13 AB4 ILE A 265 LEU A 276 1 12 HELIX 14 AB5 SER A 285 ASP A 291 1 7 HELIX 15 AB6 LEU A 292 GLU A 294 5 3 HELIX 16 AB7 PRO A 300 ILE A 308 1 9 HELIX 17 AB8 VAL A 312 TYR A 317 5 6 HELIX 18 AB9 PRO A 330 GLN A 334 5 5 HELIX 19 AC1 SER A 338 MET A 341 5 4 HELIX 20 AC2 THR A 342 GLY A 353 1 12 HELIX 21 AC3 ASP A 372 GLY A 377 1 6 HELIX 22 AC4 THR A 384 LEU A 388 5 5 HELIX 23 AC5 THR A 394 SER A 401 1 8 HELIX 24 AC6 TYR A 409 GLN A 422 1 14 HELIX 25 AC7 GLU A 472 MET A 497 1 26 HELIX 26 AC8 THR A 503 LEU A 518 1 16 HELIX 27 AC9 HIS A 522 THR A 529 1 8 HELIX 28 AD1 PRO A 530 ARG A 533 5 4 HELIX 29 AD2 ASN A 534 LEU A 546 1 13 HELIX 30 AD3 GLY A 551 PHE A 557 1 7 HELIX 31 AD4 PRO A 559 LYS A 561 5 3 HELIX 32 AD5 TYR A 562 LYS A 572 1 11 HELIX 33 AD6 ASN A 573 TRP A 574 5 2 HELIX 34 AD7 VAL A 575 GLN A 579 5 5 HELIX 35 AD8 ALA A 580 ARG A 588 1 9 HELIX 36 AD9 TYR A 608 VAL A 629 1 22 HELIX 37 AE1 PRO A 630 TYR A 632 5 3 HELIX 38 AE2 ARG A 635 ASN A 641 1 7 HELIX 39 AE3 ASP A 642 LYS A 655 1 14 HELIX 40 AE4 HIS A 657 LYS A 661 5 5 HELIX 41 AE5 THR A 671 SER A 687 1 17 HELIX 42 AE6 SER A 687 PHE A 695 1 9 HELIX 43 AE7 GLY A 696 GLY A 702 1 7 HELIX 44 AE8 THR A 720 ASN A 729 1 10 HELIX 45 AE9 ASN A 729 ILE A 738 1 10 HELIX 46 AF1 SER A 740 SER A 755 1 16 HELIX 47 AF2 ASP A 775 ASP A 802 1 28 HELIX 48 AF3 LEU A 805 LEU A 810 1 6 SHEET 1 AA1 5 GLY A 66 ASN A 68 0 SHEET 2 AA1 5 SER A 79 GLU A 86 -1 O ALA A 80 N ASN A 68 SHEET 3 AA1 5 LYS A 7 PRO A 16 -1 N GLY A 10 O ILE A 83 SHEET 4 AA1 5 PHE A 107 LEU A 114 -1 O PHE A 108 N MET A 15 SHEET 5 AA1 5 ILE A 123 VAL A 131 -1 O ILE A 123 N LEU A 114 SHEET 1 AA2 3 GLY A 56 VAL A 58 0 SHEET 2 AA2 3 VAL A 40 ALA A 50 -1 N SER A 46 O LYS A 57 SHEET 3 AA2 3 THR A 62 PHE A 63 -1 O THR A 62 N LEU A 42 SHEET 1 AA3 4 GLY A 56 VAL A 58 0 SHEET 2 AA3 4 VAL A 40 ALA A 50 -1 N SER A 46 O LYS A 57 SHEET 3 AA3 4 PRO A 94 ASN A 101 -1 O GLY A 95 N ILE A 45 SHEET 4 AA3 4 ARG A 141 PHE A 144 -1 O PHE A 143 N PHE A 97 SHEET 1 AA4 2 TYR A 186 ASP A 187 0 SHEET 2 AA4 2 ARG A 217 GLY A 218 -1 O ARG A 217 N ASP A 187 SHEET 1 AA5 3 ILE A 297 LYS A 298 0 SHEET 2 AA5 3 ILE A 324 LYS A 326 -1 O LEU A 325 N ILE A 297 SHEET 3 AA5 3 ARG A 318 THR A 319 -1 N ARG A 318 O LYS A 326 SHEET 1 AA6 5 ARG A 360 GLY A 361 0 SHEET 2 AA6 5 LEU A 404 ASP A 408 -1 O MET A 406 N ARG A 360 SHEET 3 AA6 5 ALA A 430 LEU A 437 -1 O LEU A 435 N PHE A 405 SHEET 4 AA6 5 LEU A 443 SER A 451 -1 O GLU A 449 N ARG A 432 SHEET 5 AA6 5 GLN A 465 VAL A 467 -1 O GLN A 465 N LEU A 450 SHEET 1 AA7 2 ALA A 591 LYS A 593 0 SHEET 2 AA7 2 VAL A 601 LEU A 603 -1 O ARG A 602 N ILE A 592 LINK NE2 HIS A 499 MN A MN A 901 1555 1555 2.26 LINK NE2 HIS A 504 MN A MN A 901 1555 1555 2.29 LINK NE2 HIS A 690 MN A MN A 901 1555 1555 2.24 LINK OD1 ASN A 694 MN A MN A 901 1555 1555 2.25 LINK OXT ILE A 839 MN A MN A 901 1555 1555 2.23 LINK MN A MN A 901 O HOH A1308 1555 1555 2.21 CISPEP 1 PHE A 365 PRO A 366 0 -0.56 SITE 1 AC1 6 HIS A 499 HIS A 504 HIS A 690 ASN A 694 SITE 2 AC1 6 ILE A 839 HOH A1308 SITE 1 AC2 8 ALA A 145 ASN A 146 HIS A 147 VAL A 520 SITE 2 AC2 8 LEU A 521 LYS A 526 HOH A1402 HOH A1879 SITE 1 AC3 7 ASP A 291 GLY A 295 GLY A 296 LYS A 298 SITE 2 AC3 7 HOH A1057 HOH A1103 HOH A1121 SITE 1 AC4 6 ILE A 412 ALA A 569 VAL A 570 HOH A1547 SITE 2 AC4 6 HOH A1565 HOH A1618 SITE 1 AC5 10 PHE A 346 LYS A 483 ALA A 484 ILE A 487 SITE 2 AC5 10 MET A 705 ASN A 706 PRO A 708 TYR A 734 SITE 3 AC5 10 HOH A1331 HOH A1355 SITE 1 AC6 5 ALA A 385 LEU A 388 LEU A 390 THR A 394 SITE 2 AC6 5 MET A 395 SITE 1 AC7 7 ASN A 190 GLY A 223 PRO A 224 PRO A 229 SITE 2 AC7 7 ASN A 230 THR A 231 HOH A2038 SITE 1 AC8 7 GLN A 495 HIS A 499 LEU A 546 LEU A 754 SITE 2 AC8 7 HOH A1308 HOH A1898 HOH A2010 SITE 1 AC9 7 HIS A 147 THR A 148 SER A 774 ASP A 775 SITE 2 AC9 7 HOH A1606 HOH A1742 HOH A2134 SITE 1 AD1 9 ASP A 440 ASP A 607 SER A 804 LEU A 805 SITE 2 AD1 9 GLY A 807 ASN A 808 HOH A1764 HOH A1924 SITE 3 AD1 9 HOH A2037 SITE 1 AD2 8 VAL A 205 ASN A 230 TYR A 317 ARG A 318 SITE 2 AD2 8 THR A 319 HOH A1002 HOH A1148 HOH A1182 SITE 1 AD3 8 THR A 555 THR A 556 ALA A 710 PRO A 743 SITE 2 AD3 8 HOH A1465 HOH A1497 HOH A1501 HOH A2106 SITE 1 AD4 11 GLY A 89 SER A 90 ASP A 389 LEU A 390 SITE 2 AD4 11 ASP A 391 GLY A 392 TYR A 393 HOH A1004 SITE 3 AD4 11 HOH A1105 HOH A1252 HOH A1261 SITE 1 AD5 7 HIS A 290 GLN A 337 SER A 338 TRP A 340 SITE 2 AD5 7 MET A 341 HOH A1049 HOH A1193 SITE 1 AD6 4 LYS A 233 HOH A1056 HOH A1179 HOH A1259 CRYST1 48.123 91.497 90.897 90.00 93.88 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020780 0.000000 0.001408 0.00000 SCALE2 0.000000 0.010929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011027 0.00000