HEADER OXIDOREDUCTASE 17-SEP-14 4WFS TITLE CRYSTAL STRUCTURE OF TRNA-DIHYDROURIDINE(20) SYNTHASE CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DUS DOMAIN, UNP RESIDUES 14-333; COMPND 5 SYNONYM: DIHYDROURIDINE SYNTHASE 2,UP-REGULATED IN LUNG CANCER COMPND 6 PROTEIN 8,URLC8,TRNA-DIHYDROURIDINE SYNTHASE 2-LIKE,HDUS2; COMPND 7 EC: 1.3.1.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DUS2, DUS2L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS RNA BINDING PROTEIN, TRNA PROCESSING, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.BOU-NADER,L.PECQUEUR,A.KAMAH,D.BREGEON,B.GOLINELLI-PIMPANEAU, AUTHOR 2 B.G.GUIMARAES,M.FONTECAVE,D.HAMDANE REVDAT 5 10-JAN-24 4WFS 1 REMARK REVDAT 4 08-NOV-23 4WFS 1 AUTHOR REVDAT 3 11-NOV-15 4WFS 1 JRNL REVDAT 2 14-OCT-15 4WFS 1 JRNL REVDAT 1 07-OCT-15 4WFS 0 JRNL AUTH C.BOU-NADER,L.PECQUEUR,D.BREGEON,A.KAMAH,V.GUERINEAU, JRNL AUTH 2 B.GOLINELLI-PIMPANEAU,B.G.GUIMARAES,M.FONTECAVE,D.HAMDANE JRNL TITL AN EXTENDED DSRBD IS REQUIRED FOR POST-TRANSCRIPTIONAL JRNL TITL 2 MODIFICATION IN HUMAN TRNAS. JRNL REF NUCLEIC ACIDS RES. V. 43 9446 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26429968 JRNL DOI 10.1093/NAR/GKV989 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 635 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2941 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2509 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2794 REMARK 3 BIN R VALUE (WORKING SET) : 0.2479 REMARK 3 BIN FREE R VALUE : 0.3103 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.23610 REMARK 3 B22 (A**2) : 6.33040 REMARK 3 B33 (A**2) : -5.09430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.337 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.494 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.258 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.484 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.260 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2452 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3341 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1138 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 54 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 403 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2452 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 335 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3009 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 5.55 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 43.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.12 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3B0P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 8 MG/ML IN TRIS 25 MM PH 8.0 REMARK 280 NACL 150 MM PRECIPITANT: AMMONIUM SULFATE 2.2 M, ISOPROPANOL 2% REMARK 280 V/V, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.11500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.11500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.63000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.11500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.78500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.63000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.11500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 CYS A 116 REMARK 465 PRO A 117 REMARK 465 LYS A 118 REMARK 465 GLN A 119 REMARK 465 TYR A 120 REMARK 465 SER A 121 REMARK 465 THR A 122 REMARK 465 LYS A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 MET A 126 REMARK 465 GLY A 127 REMARK 465 ALA A 128 REMARK 465 GLN A 331 REMARK 465 ALA A 332 REMARK 465 ARG A 333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 12 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 79 NE CZ NH1 NH2 REMARK 470 SER A 132 OG REMARK 470 ASP A 135 CG OD1 OD2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 192 CG CD OE1 NE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 GLN A 292 OE1 NE2 REMARK 470 GLU A 294 OE1 OE2 REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 GLN A 325 CG CD OE1 NE2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 GLN A 330 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 308 O HOH A 509 0.98 REMARK 500 CZ ARG A 308 O HOH A 509 1.45 REMARK 500 NH2 ARG A 308 O HOH A 509 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 -51.82 64.83 REMARK 500 GLU A 42 156.74 -48.90 REMARK 500 MET A 114 43.17 -143.13 REMARK 500 HIS A 218 -69.13 69.62 REMARK 500 ALA A 242 -87.20 -109.82 REMARK 500 ARG A 290 -110.58 55.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 DBREF 4WFS A 14 333 UNP Q9NX74 DUS2L_HUMAN 14 333 SEQADV 4WFS MET A 7 UNP Q9NX74 EXPRESSION TAG SEQADV 4WFS HIS A 8 UNP Q9NX74 EXPRESSION TAG SEQADV 4WFS HIS A 9 UNP Q9NX74 EXPRESSION TAG SEQADV 4WFS HIS A 10 UNP Q9NX74 EXPRESSION TAG SEQADV 4WFS HIS A 11 UNP Q9NX74 EXPRESSION TAG SEQADV 4WFS HIS A 12 UNP Q9NX74 EXPRESSION TAG SEQADV 4WFS HIS A 13 UNP Q9NX74 EXPRESSION TAG SEQRES 1 A 327 MET HIS HIS HIS HIS HIS HIS LEU ILE LEU ALA PRO MET SEQRES 2 A 327 VAL ARG VAL GLY THR LEU PRO MET ARG LEU LEU ALA LEU SEQRES 3 A 327 ASP TYR GLY ALA ASP ILE VAL TYR CYS GLU GLU LEU ILE SEQRES 4 A 327 ASP LEU LYS MET ILE GLN CYS LYS ARG VAL VAL ASN GLU SEQRES 5 A 327 VAL LEU SER THR VAL ASP PHE VAL ALA PRO ASP ASP ARG SEQRES 6 A 327 VAL VAL PHE ARG THR CYS GLU ARG GLU GLN ASN ARG VAL SEQRES 7 A 327 VAL PHE GLN MET GLY THR SER ASP ALA GLU ARG ALA LEU SEQRES 8 A 327 ALA VAL ALA ARG LEU VAL GLU ASN ASP VAL ALA GLY ILE SEQRES 9 A 327 ASP VAL ASN MET GLY CYS PRO LYS GLN TYR SER THR LYS SEQRES 10 A 327 GLY GLY MET GLY ALA ALA LEU LEU SER ASP PRO ASP LYS SEQRES 11 A 327 ILE GLU LYS ILE LEU SER THR LEU VAL LYS GLY THR ARG SEQRES 12 A 327 ARG PRO VAL THR CYS LYS ILE ARG ILE LEU PRO SER LEU SEQRES 13 A 327 GLU ASP THR LEU SER LEU VAL LYS ARG ILE GLU ARG THR SEQRES 14 A 327 GLY ILE ALA ALA ILE ALA VAL HIS GLY ARG LYS ARG GLU SEQRES 15 A 327 GLU ARG PRO GLN HIS PRO VAL SER CYS GLU VAL ILE LYS SEQRES 16 A 327 ALA ILE ALA ASP THR LEU SER ILE PRO VAL ILE ALA ASN SEQRES 17 A 327 GLY GLY SER HIS ASP HIS ILE GLN GLN TYR SER ASP ILE SEQRES 18 A 327 GLU ASP PHE ARG GLN ALA THR ALA ALA SER SER VAL MET SEQRES 19 A 327 VAL ALA ARG ALA ALA MET TRP ASN PRO SER ILE PHE LEU SEQRES 20 A 327 LYS GLU GLY LEU ARG PRO LEU GLU GLU VAL MET GLN LYS SEQRES 21 A 327 TYR ILE ARG TYR ALA VAL GLN TYR ASP ASN HIS TYR THR SEQRES 22 A 327 ASN THR LYS TYR CYS LEU CYS GLN MET LEU ARG GLU GLN SEQRES 23 A 327 LEU GLU SER PRO GLN GLY ARG LEU LEU HIS ALA ALA GLN SEQRES 24 A 327 SER SER ARG GLU ILE CYS GLU ALA PHE GLY LEU GLY ALA SEQRES 25 A 327 PHE TYR GLU GLU THR THR GLN GLU LEU ASP ALA GLN GLN SEQRES 26 A 327 ALA ARG HET FMN A 401 62 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET CL A 406 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 8 HOH *28(H2 O) HELIX 1 AA1 THR A 24 GLY A 35 1 12 HELIX 2 AA2 ASP A 46 ILE A 50 1 5 HELIX 3 AA3 CYS A 77 GLN A 81 5 5 HELIX 4 AA4 ASP A 92 GLU A 104 1 13 HELIX 5 AA5 ALA A 129 SER A 132 5 4 HELIX 6 AA6 ASP A 133 THR A 148 1 16 HELIX 7 AA7 SER A 161 THR A 175 1 15 HELIX 8 AA8 SER A 196 LEU A 207 1 12 HELIX 9 AA9 SER A 225 THR A 234 1 10 HELIX 10 AB1 ALA A 242 ASN A 248 1 7 HELIX 11 AB2 PRO A 249 LEU A 253 5 5 HELIX 12 AB3 PRO A 259 TYR A 274 1 16 HELIX 13 AB4 HIS A 277 ARG A 290 1 14 HELIX 14 AB5 GLU A 291 GLU A 294 5 4 HELIX 15 AB6 SER A 295 ALA A 304 1 10 HELIX 16 AB7 SER A 306 ALA A 313 1 8 HELIX 17 AB8 LEU A 316 ALA A 329 1 14 SHEET 1 AA110 LEU A 44 ILE A 45 0 SHEET 2 AA110 VAL A 84 GLY A 89 1 O GLY A 89 N LEU A 44 SHEET 3 AA110 GLY A 109 MET A 114 1 O ASP A 111 N PHE A 86 SHEET 4 AA110 VAL A 152 ILE A 158 1 O THR A 153 N ILE A 110 SHEET 5 AA110 ILE A 180 LYS A 186 1 O HIS A 183 N ILE A 156 SHEET 6 AA110 VAL A 211 ASN A 214 1 O ILE A 212 N ILE A 180 SHEET 7 AA110 SER A 238 VAL A 241 1 O MET A 240 N ALA A 213 SHEET 8 AA110 LEU A 14 LEU A 16 1 N ILE A 15 O VAL A 241 SHEET 9 AA110 ILE A 38 TYR A 40 1 O ILE A 38 N LEU A 16 SHEET 10 AA110 VAL A 84 GLY A 89 1 O VAL A 85 N VAL A 39 SHEET 1 AA2 3 LYS A 53 ASN A 57 0 SHEET 2 AA2 3 THR A 62 VAL A 66 -1 O VAL A 66 N LYS A 53 SHEET 3 AA2 3 VAL A 72 THR A 76 -1 O THR A 76 N VAL A 63 SITE 1 AC1 19 ALA A 17 PRO A 18 MET A 19 VAL A 20 SITE 2 AC1 19 GLU A 43 GLN A 87 ASN A 113 LYS A 155 SITE 3 AC1 19 HIS A 183 ASN A 214 GLY A 215 GLY A 216 SITE 4 AC1 19 SER A 217 MET A 240 ALA A 242 ARG A 243 SITE 5 AC1 19 SO4 A 403 HOH A 502 HOH A 524 SITE 1 AC2 6 SER A 91 ARG A 95 GLY A 315 LEU A 316 SITE 2 AC2 6 GLY A 317 ALA A 318 SITE 1 AC3 5 GLY A 115 LYS A 155 ARG A 157 HIS A 183 SITE 2 AC3 5 FMN A 401 SITE 1 AC4 4 ARG A 21 THR A 279 ASN A 280 HOH A 527 SITE 1 AC5 3 ASN A 82 ARG A 83 HOH A 520 SITE 1 AC6 1 ARG A 258 CRYST1 71.570 85.260 144.230 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006933 0.00000