HEADER TRANSFERASE 19-SEP-14 4WH3 TITLE N-ACETYLHEXOSAMINE 1-KINASE IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLHEXOSAMINE 1-KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-ACETYLGALACTOSAMINE/N-ACETYLGLUCOSAMINE 1-KINASE; COMPND 5 EC: 2.7.1.162; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM LONGUM SUBSP. LONGUM JCM 1217; SOURCE 3 ORGANISM_TAXID: 565042; SOURCE 4 ATCC: 15707; SOURCE 5 GENE: NAHK, LNPB, BLLJ_1622; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS NAHK, ANOMERIC KINASE, APH, OPEN CONFORMATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SATO,T.ARAKAWA,Y.W.NAM,M.NISHIMOTO,M.KITAOKA,S.FUSHINOBU REVDAT 3 05-FEB-20 4WH3 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4WH3 1 JRNL REVDAT 1 18-FEB-15 4WH3 0 JRNL AUTH M.SATO,T.ARAKAWA,Y.W.NAM,M.NISHIMOTO,M.KITAOKA,S.FUSHINOBU JRNL TITL OPEN-CLOSE STRUCTURAL CHANGE UPON LIGAND BINDING AND TWO JRNL TITL 2 MAGNESIUM IONS REQUIRED FOR THE CATALYSIS OF JRNL TITL 3 N-ACETYLHEXOSAMINE 1-KINASE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1854 333 2015 JRNL REFN ISSN 0006-3002 JRNL PMID 25644306 JRNL DOI 10.1016/J.BBAPAP.2015.01.011 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NISHIMOTO,M.KITAOKA REMARK 1 TITL IDENTIFICATION OF N-ACETYLHEXOSAMINE 1-KINASE IN THE REMARK 1 TITL 2 COMPLETE LACTO-N-BIOSE I/GALACTO-N-BIOSE METABOLIC PATHWAY REMARK 1 TITL 3 IN BIFIDOBACTERIUM LONGUM. REMARK 1 REF APPL. ENVIRON. MICROBIOL. V. 73 6444 2007 REMARK 1 REFN ISSN 0099-2240 REMARK 1 PMID 17720833 REMARK 1 DOI 10.1128/AEM.01425-07 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 73176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 3737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6097 - 5.3813 0.92 2403 126 0.1877 0.2036 REMARK 3 2 5.3813 - 4.2744 0.96 2513 135 0.1673 0.1675 REMARK 3 3 4.2744 - 3.7349 0.98 2546 137 0.1567 0.1924 REMARK 3 4 3.7349 - 3.3938 0.98 2517 133 0.1687 0.2419 REMARK 3 5 3.3938 - 3.1508 0.99 2593 138 0.1831 0.1985 REMARK 3 6 3.1508 - 2.9652 0.99 2584 138 0.1856 0.2016 REMARK 3 7 2.9652 - 2.8167 0.99 2569 141 0.1932 0.2405 REMARK 3 8 2.8167 - 2.6942 1.00 2598 144 0.1902 0.2170 REMARK 3 9 2.6942 - 2.5905 0.99 2531 136 0.1900 0.2455 REMARK 3 10 2.5905 - 2.5012 1.00 2635 142 0.1926 0.2158 REMARK 3 11 2.5012 - 2.4230 1.00 2596 139 0.2040 0.2307 REMARK 3 12 2.4230 - 2.3537 1.00 2615 137 0.2039 0.2548 REMARK 3 13 2.3537 - 2.2918 1.00 2576 139 0.2105 0.2287 REMARK 3 14 2.2918 - 2.2359 1.00 2594 139 0.1990 0.2367 REMARK 3 15 2.2359 - 2.1851 1.00 2588 136 0.2073 0.2679 REMARK 3 16 2.1851 - 2.1386 1.00 2657 142 0.2053 0.2436 REMARK 3 17 2.1386 - 2.0958 1.00 2512 139 0.2007 0.2425 REMARK 3 18 2.0958 - 2.0563 1.00 2644 136 0.2043 0.2440 REMARK 3 19 2.0563 - 2.0196 1.00 2578 141 0.2021 0.2352 REMARK 3 20 2.0196 - 1.9853 1.00 2608 141 0.2037 0.2344 REMARK 3 21 1.9853 - 1.9533 1.00 2620 143 0.2133 0.2792 REMARK 3 22 1.9533 - 1.9233 1.00 2553 139 0.2123 0.2168 REMARK 3 23 1.9233 - 1.8950 0.99 2596 141 0.2208 0.2759 REMARK 3 24 1.8950 - 1.8683 0.99 2602 145 0.2157 0.2173 REMARK 3 25 1.8683 - 1.8430 1.00 2579 139 0.2152 0.2722 REMARK 3 26 1.8430 - 1.8191 0.99 2624 139 0.2317 0.3446 REMARK 3 27 1.8191 - 1.7964 0.93 2408 132 0.2409 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2905 REMARK 3 ANGLE : 1.067 3936 REMARK 3 CHIRALITY : 0.075 438 REMARK 3 PLANARITY : 0.004 508 REMARK 3 DIHEDRAL : 15.874 1046 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MAGNESIUM ACETATE, SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.60950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.23550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.60950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.23550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 LEU A 360 REMARK 465 GLU A 361 REMARK 465 HIS A 362 REMARK 465 HIS A 363 REMARK 465 HIS A 364 REMARK 465 HIS A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 95 48.67 39.31 REMARK 500 ASN A 112 -77.69 -89.88 REMARK 500 ASP A 166 52.52 36.50 REMARK 500 ILE A 227 -169.55 -116.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 OD1 REMARK 620 2 ASP A 228 OD2 92.2 REMARK 620 3 ATP A 401 O3G 161.3 95.4 REMARK 620 4 ATP A 401 O2A 100.4 85.5 97.3 REMARK 620 5 HOH A 562 O 81.2 94.2 81.2 178.4 REMARK 620 6 HOH A 563 O 83.7 175.0 89.4 92.5 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 228 OD1 REMARK 620 2 ASP A 228 OD2 62.4 REMARK 620 3 ATP A 401 O1G 153.1 91.4 REMARK 620 4 ATP A 401 O2B 87.1 89.9 86.7 REMARK 620 5 HOH A 564 O 98.6 161.0 107.5 88.9 REMARK 620 6 HOH A 565 O 91.3 91.0 95.5 177.6 89.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OCJ RELATED DB: PDB REMARK 900 4OCJ CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC. REMARK 900 RELATED ID: 4OCK RELATED DB: PDB REMARK 900 4OCK CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC AND AMPPNP. REMARK 900 RELATED ID: 4OCO RELATED DB: PDB REMARK 900 4OCO CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC-1-PHOSPHATE. REMARK 900 RELATED ID: 4OCP RELATED DB: PDB REMARK 900 4OCP CONTAINS THE SAME PROTEIN COMPLEXED WITH GLCNAC-1-PHOSPHATE REMARK 900 AND ADP. REMARK 900 RELATED ID: 4OCQ RELATED DB: PDB REMARK 900 4OCQ CONTAINS THE SAME PROTEIN COMPLEXED WITH GALNAC. REMARK 900 RELATED ID: 4OCU RELATED DB: PDB REMARK 900 4OCU IS THE SAME PROTEIN BUT FROM DIFFERENT STRAIN. REMARK 900 RELATED ID: 4OCV RELATED DB: PDB REMARK 900 4OCV IS THE SAME PROTEIN BUT FROM DIFFERENT STRAIN. REMARK 900 RELATED ID: 4WH1 RELATED DB: PDB REMARK 900 RELATED ID: 4WH3 RELATED DB: PDB DBREF 4WH3 A 1 359 UNP E8MF12 NAHK_BIFL2 1 359 SEQADV 4WH3 VAL A 7 UNP E8MF12 ASP 7 ENGINEERED MUTATION SEQADV 4WH3 LEU A 360 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 GLU A 361 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 HIS A 362 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 HIS A 363 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 HIS A 364 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 HIS A 365 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 HIS A 366 UNP E8MF12 EXPRESSION TAG SEQADV 4WH3 HIS A 367 UNP E8MF12 EXPRESSION TAG SEQRES 1 A 367 MSE THR GLU SER ASN GLU VAL LEU PHE GLY ILE ALA SER SEQRES 2 A 367 HIS PHE ALA LEU GLU GLY ALA VAL THR GLY ILE GLU PRO SEQRES 3 A 367 TYR GLY ASP GLY HIS ILE ASN THR THR TYR LEU VAL THR SEQRES 4 A 367 THR ASP GLY PRO ARG TYR ILE LEU GLN GLN MSE ASN THR SEQRES 5 A 367 SER ILE PHE PRO ASP THR VAL ASN LEU MSE ARG ASN VAL SEQRES 6 A 367 GLU LEU VAL THR SER THR LEU LYS ALA GLN GLY LYS GLU SEQRES 7 A 367 THR LEU ASP ILE VAL PRO THR THR SER GLY ALA THR TRP SEQRES 8 A 367 ALA GLU ILE ASP GLY GLY ALA TRP ARG VAL TYR LYS PHE SEQRES 9 A 367 ILE GLU HIS THR VAL SER TYR ASN LEU VAL PRO ASN PRO SEQRES 10 A 367 ASP VAL PHE ARG GLU ALA GLY SER ALA PHE GLY ASP PHE SEQRES 11 A 367 GLN ASN PHE LEU SER GLU PHE ASP ALA SER GLN LEU THR SEQRES 12 A 367 GLU THR ILE ALA HIS PHE HIS ASP THR PRO HIS ARG PHE SEQRES 13 A 367 GLU ASP PHE LYS ALA ALA LEU ALA ALA ASP LYS LEU GLY SEQRES 14 A 367 ARG ALA ALA ALA CYS GLN PRO GLU ILE ASP PHE TYR LEU SEQRES 15 A 367 SER HIS ALA ASP GLN TYR ALA VAL VAL MSE ASP GLY LEU SEQRES 16 A 367 ARG ASP GLY SER ILE PRO LEU ARG VAL THR HIS ASN ASP SEQRES 17 A 367 THR LYS LEU ASN ASN ILE LEU MSE ASP ALA THR THR GLY SEQRES 18 A 367 LYS ALA ARG ALA ILE ILE ASP LEU ASP THR ILE MSE PRO SEQRES 19 A 367 GLY SER MSE LEU PHE ASP PHE GLY ASP SER ILE ARG PHE SEQRES 20 A 367 GLY ALA SER THR ALA LEU GLU ASP GLU LYS ASP LEU SER SEQRES 21 A 367 LYS VAL HIS PHE SER THR GLU LEU PHE ARG ALA TYR THR SEQRES 22 A 367 GLU GLY PHE VAL GLY GLU LEU ARG GLY SER ILE THR ALA SEQRES 23 A 367 ARG GLU ALA GLU LEU LEU PRO PHE SER GLY ASN LEU LEU SEQRES 24 A 367 THR MSE GLU CYS GLY MSE ARG PHE LEU ALA ASP TYR LEU SEQRES 25 A 367 GLU GLY ASP ILE TYR PHE ALA THR LYS TYR PRO GLU HIS SEQRES 26 A 367 ASN LEU VAL ARG THR ARG THR GLN ILE LYS LEU VAL GLN SEQRES 27 A 367 GLU MSE GLU GLN LYS ALA SER GLU THR ARG ALA ILE VAL SEQRES 28 A 367 ALA ASP ILE MSE GLU ALA ALA ARG LEU GLU HIS HIS HIS SEQRES 29 A 367 HIS HIS HIS MODRES 4WH3 MSE A 50 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 62 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 192 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 216 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 233 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 237 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 301 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 305 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 340 MET MODIFIED RESIDUE MODRES 4WH3 MSE A 355 MET MODIFIED RESIDUE HET MSE A 50 8 HET MSE A 62 8 HET MSE A 192 8 HET MSE A 216 8 HET MSE A 233 8 HET MSE A 237 8 HET MSE A 301 8 HET MSE A 305 8 HET MSE A 340 8 HET MSE A 355 8 HET ATP A 401 31 HET MG A 402 1 HET MG A 403 1 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET ACY A 409 4 HET ACY A 410 7 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 ACY 2(C2 H4 O2) FORMUL 12 HOH *289(H2 O) HELIX 1 AA1 SER A 4 SER A 13 1 10 HELIX 2 AA2 ASP A 57 GLN A 75 1 19 HELIX 3 AA3 ASN A 116 LEU A 134 1 19 HELIX 4 AA4 ASP A 138 LEU A 142 5 5 HELIX 5 AA5 ASP A 151 ASP A 166 1 16 HELIX 6 AA6 ARG A 170 ALA A 173 5 4 HELIX 7 AA7 CYS A 174 HIS A 184 1 11 HELIX 8 AA8 ALA A 185 TYR A 188 5 4 HELIX 9 AA9 ALA A 189 ASP A 197 1 9 HELIX 10 AB1 LYS A 210 ASN A 212 5 3 HELIX 11 AB2 SER A 236 ALA A 249 1 14 HELIX 12 AB3 SER A 265 ARG A 281 1 17 HELIX 13 AB4 THR A 285 LEU A 291 1 7 HELIX 14 AB5 LEU A 291 GLU A 313 1 23 HELIX 15 AB6 GLU A 324 LYS A 343 1 20 HELIX 16 AB7 LYS A 343 ARG A 359 1 17 SHEET 1 AA1 5 VAL A 21 PRO A 26 0 SHEET 2 AA1 5 THR A 34 THR A 40 -1 O LEU A 37 N GLU A 25 SHEET 3 AA1 5 TYR A 45 GLN A 49 -1 O LEU A 47 N TYR A 36 SHEET 4 AA1 5 GLY A 97 LYS A 103 -1 O TYR A 102 N ILE A 46 SHEET 5 AA1 5 ALA A 92 ILE A 94 -1 N ILE A 94 O GLY A 97 SHEET 1 AA2 3 THR A 108 VAL A 109 0 SHEET 2 AA2 3 ILE A 214 ASP A 217 -1 O MSE A 216 N VAL A 109 SHEET 3 AA2 3 ALA A 223 ILE A 226 -1 O ARG A 224 N LEU A 215 SHEET 1 AA3 2 ARG A 203 THR A 205 0 SHEET 2 AA3 2 MSE A 233 GLY A 235 -1 O GLY A 235 N ARG A 203 LINK C GLN A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ASN A 51 1555 1555 1.33 LINK C LEU A 61 N MSE A 62 1555 1555 1.33 LINK C MSE A 62 N ARG A 63 1555 1555 1.33 LINK C VAL A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ASP A 193 1555 1555 1.33 LINK OD1 ASN A 213 MG MG A 402 1555 1555 2.11 LINK C LEU A 215 N MSE A 216 1555 1555 1.32 LINK C MSE A 216 N ASP A 217 1555 1555 1.33 LINK OD1 ASP A 228 MG MG A 403 1555 1555 2.14 LINK OD2 ASP A 228 MG MG A 403 1555 1555 2.09 LINK OD2 ASP A 228 MG MG A 402 1555 1555 2.11 LINK C ILE A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N PRO A 234 1555 1555 1.34 LINK C SER A 236 N MSE A 237 1555 1555 1.34 LINK C MSE A 237 N LEU A 238 1555 1555 1.33 LINK C THR A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N GLU A 302 1555 1555 1.33 LINK C GLY A 304 N MSE A 305 1555 1555 1.33 LINK C MSE A 305 N ARG A 306 1555 1555 1.34 LINK C GLU A 339 N MSE A 340 1555 1555 1.33 LINK C MSE A 340 N GLU A 341 1555 1555 1.33 LINK C ILE A 354 N MSE A 355 1555 1555 1.33 LINK C MSE A 355 N GLU A 356 1555 1555 1.33 LINK O1G ATP A 401 MG MG A 403 1555 1555 2.09 LINK O3G ATP A 401 MG MG A 402 1555 1555 2.01 LINK O2B ATP A 401 MG MG A 403 1555 1555 1.95 LINK O2A ATP A 401 MG MG A 402 1555 1555 1.89 LINK MG MG A 402 O HOH A 562 1555 1555 2.11 LINK MG MG A 402 O HOH A 563 1555 1555 2.04 LINK MG MG A 403 O HOH A 564 1555 1555 2.08 LINK MG MG A 403 O HOH A 565 1555 1555 2.08 SITE 1 AC1 27 GLY A 28 ASP A 29 GLY A 30 HIS A 31 SITE 2 AC1 27 ILE A 32 ASN A 33 THR A 35 ILE A 46 SITE 3 AC1 27 GLN A 48 LEU A 80 LYS A 103 ILE A 105 SITE 4 AC1 27 ASN A 213 ILE A 227 ASP A 228 MG A 402 SITE 5 AC1 27 MG A 403 GOL A 404 HOH A 562 HOH A 563 SITE 6 AC1 27 HOH A 564 HOH A 565 HOH A 568 HOH A 589 SITE 7 AC1 27 HOH A 598 HOH A 629 HOH A 634 SITE 1 AC2 5 ASN A 213 ASP A 228 ATP A 401 HOH A 562 SITE 2 AC2 5 HOH A 563 SITE 1 AC3 4 ASP A 228 ATP A 401 HOH A 564 HOH A 565 SITE 1 AC4 6 TYR A 27 THR A 108 VAL A 109 SER A 110 SITE 2 AC4 6 ATP A 401 HOH A 754 SITE 1 AC5 10 HIS A 148 PHE A 149 HIS A 150 ASP A 151 SITE 2 AC5 10 PRO A 234 GLY A 235 PHE A 239 GOL A 408 SITE 3 AC5 10 HOH A 502 HOH A 595 SITE 1 AC6 6 ASN A 207 ASP A 208 LYS A 210 ASP A 243 SITE 2 AC6 6 ARG A 246 ACY A 409 SITE 1 AC7 6 ALA A 126 ASP A 129 ALA A 223 ARG A 224 SITE 2 AC7 6 HOH A 657 HOH A 773 SITE 1 AC8 8 GLU A 144 LYS A 167 LEU A 202 PRO A 234 SITE 2 AC8 8 GLY A 235 GOL A 405 HOH A 502 HOH A 553 SITE 1 AC9 4 PHE A 55 GOL A 406 HOH A 564 HOH A 565 SITE 1 AD1 5 SER A 140 LEU A 142 ALA A 165 ASP A 166 SITE 2 AD1 5 HOH A 547 CRYST1 44.030 88.471 105.219 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022712 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009504 0.00000