HEADER TRANSFERASE/ANTIBIOTIC 20-SEP-14 4WH5 TITLE CRYSTAL STRUCTURE OF LINCOSAMIDE ANTIBIOTIC ADENYLYLTRANSFERASE LNUA, TITLE 2 LINCOMYCIN-BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINCOSAMIDE RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS HAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1283; SOURCE 4 GENE: LINA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, ANTIBIOTIC RESISTANCE, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES (CSGID), ALPHA+BETA STRUCTURE, KEYWDS 3 AMINOGLYCOSIDE-2''-ADENYLYLTRANSFERASE SUPERFAMILY, KEYWDS 4 NUCLEOTIDYLTRANSFERASE SUPERFAMILY, TRANSFERASE, LINCOSAMIDE KEYWDS 5 ADENYLYLTRANSFERASE, LINCOSAMIDE ANTIBIOTICS, LINCOMYCIN, KEYWDS 6 CLINDAMYCIN, ADENOSINE TRIPHOSPHATE, INTRACELLULAR, TRANSFERASE- KEYWDS 7 ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,A.DONG,G.MINASOV,E.EVDOKIMOVA,O.EGOROVA,M.KUDRITSKA, AUTHOR 2 O.YIM,P.COURVALIN,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 15-NOV-23 4WH5 1 DBREF REVDAT 3 27-SEP-23 4WH5 1 SOURCE REMARK LINK REVDAT 2 12-NOV-14 4WH5 1 HETSYN REVDAT 1 05-NOV-14 4WH5 0 SPRSDE 05-NOV-14 4WH5 4E8J JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF LINCOSAMIDE ANTIBIOTIC JRNL TITL 2 ADENYLYLTRANSFERASE LNUA, LINCOMYCIN BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.430 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.3514 - 4.3778 0.99 2615 150 0.1893 0.1944 REMARK 3 2 4.3778 - 3.4785 1.00 2584 142 0.1638 0.2124 REMARK 3 3 3.4785 - 3.0399 1.00 2552 147 0.1771 0.2230 REMARK 3 4 3.0399 - 2.7624 1.00 2562 136 0.1999 0.2577 REMARK 3 5 2.7624 - 2.5647 1.00 2540 153 0.1997 0.2354 REMARK 3 6 2.5647 - 2.4136 1.00 2586 138 0.1966 0.2379 REMARK 3 7 2.4136 - 2.2929 1.00 2553 141 0.1905 0.2204 REMARK 3 8 2.2929 - 2.1931 1.00 2540 141 0.1838 0.2673 REMARK 3 9 2.1931 - 2.1088 1.00 2546 144 0.1815 0.2140 REMARK 3 10 2.1088 - 2.0360 1.00 2541 142 0.1889 0.2276 REMARK 3 11 2.0360 - 1.9724 1.00 2545 139 0.1997 0.2533 REMARK 3 12 1.9724 - 1.9160 1.00 2540 142 0.1938 0.2834 REMARK 3 13 1.9160 - 1.8656 1.00 2543 141 0.2192 0.2782 REMARK 3 14 1.8656 - 1.8201 0.97 2427 141 0.2543 0.3120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2801 REMARK 3 ANGLE : 1.424 3805 REMARK 3 CHIRALITY : 0.100 403 REMARK 3 PLANARITY : 0.007 487 REMARK 3 DIHEDRAL : 15.505 1024 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6852 -1.3791 -22.7846 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1437 REMARK 3 T33: 0.1436 T12: 0.0001 REMARK 3 T13: -0.0164 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 3.1038 L22: 2.4482 REMARK 3 L33: 1.7731 L12: -1.5178 REMARK 3 L13: -0.2236 L23: -0.1299 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: 0.2360 S13: -0.0233 REMARK 3 S21: -0.1115 S22: -0.0764 S23: 0.2043 REMARK 3 S31: -0.0078 S32: -0.2138 S33: -0.0154 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 95:161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3267 -10.6184 -16.5111 REMARK 3 T TENSOR REMARK 3 T11: 0.0781 T22: 0.1311 REMARK 3 T33: 0.1525 T12: 0.0247 REMARK 3 T13: -0.0095 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.7563 L22: 4.3456 REMARK 3 L33: 2.1202 L12: -0.2500 REMARK 3 L13: 1.0352 L23: 0.3054 REMARK 3 S TENSOR REMARK 3 S11: 0.1581 S12: 0.0780 S13: -0.2045 REMARK 3 S21: -0.0399 S22: -0.0873 S23: -0.0168 REMARK 3 S31: 0.1761 S32: 0.0446 S33: -0.0474 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 4:94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2569 -34.8674 1.5302 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.0949 REMARK 3 T33: 0.1123 T12: 0.0189 REMARK 3 T13: -0.0094 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.5118 L22: 2.2490 REMARK 3 L33: 2.0405 L12: 0.6699 REMARK 3 L13: -1.0540 L23: -1.3527 REMARK 3 S TENSOR REMARK 3 S11: -0.0591 S12: -0.1216 S13: -0.0495 REMARK 3 S21: 0.0152 S22: -0.0059 S23: 0.0283 REMARK 3 S31: 0.0978 S32: 0.0010 S33: 0.0504 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 95:161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6595 -26.8449 -10.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.1354 REMARK 3 T33: 0.1893 T12: -0.0230 REMARK 3 T13: -0.0133 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.3269 L22: 3.5066 REMARK 3 L33: 3.3997 L12: -0.7714 REMARK 3 L13: 0.1942 L23: -0.0602 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: 0.1646 S13: -0.2083 REMARK 3 S21: -0.2815 S22: 0.0895 S23: 0.3930 REMARK 3 S31: 0.2757 S32: -0.2376 S33: 0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37695 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 16.2700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.17400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.036 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX PHENIX.PHASER REMARK 200 STARTING MODEL: 4FO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M TRI-SODIUM CITRATE DIHYDRATE, REMARK 280 0.1 M HEPES PH 7.3, 5 MM LINCOMYCIN, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.72200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 ASN B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 107 CD PRO A 107 N 0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 5 -164.31 -128.61 REMARK 500 ARG B 78 148.76 -170.11 REMARK 500 PRO B 107 -17.45 -41.15 REMARK 500 GLU B 108 -67.10 -121.93 REMARK 500 SER B 120 -147.92 -139.28 REMARK 500 ASP B 126 38.51 39.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 474 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 477 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 473 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 493 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 501 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH B 503 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD1 REMARK 620 2 ASP A 48 OD2 101.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 48 OD2 REMARK 620 2 3QB A 204 O4 113.3 REMARK 620 3 HOH A 466 O 114.1 60.3 REMARK 620 4 HOH A 518 O 114.3 108.2 130.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 46 OD1 REMARK 620 2 ASP B 48 OD2 103.8 REMARK 620 3 HOH B 372 O 133.6 104.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD2 REMARK 620 2 HOH B 516 O 121.0 REMARK 620 3 HOH B 527 O 56.5 64.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QB A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QB B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E8J RELATED DB: PDB REMARK 900 THIS ENTRY SUPERCEDES 4E8J REMARK 900 RELATED ID: IDP91779 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4FO1 RELATED DB: PDB DBREF 4WH5 A 2 161 UNP P06107 LINA_STAHA 2 161 DBREF 4WH5 B 2 161 UNP P06107 LINA_STAHA 2 161 SEQADV 4WH5 GLY A 0 UNP P06107 EXPRESSION TAG SEQADV 4WH5 MSE A 1 UNP P06107 EXPRESSION TAG SEQADV 4WH5 GLY B 0 UNP P06107 EXPRESSION TAG SEQADV 4WH5 MSE B 1 UNP P06107 EXPRESSION TAG SEQRES 1 A 162 GLY MSE LYS ASN ASN ASN VAL THR GLU LYS GLU LEU PHE SEQRES 2 A 162 TYR ILE LEU ASP LEU PHE GLU HIS MSE LYS VAL THR TYR SEQRES 3 A 162 TRP LEU ASP GLY GLY TRP GLY VAL ASP VAL LEU THR GLY SEQRES 4 A 162 LYS GLN GLN ARG GLU HIS ARG ASP ILE ASP ILE ASP PHE SEQRES 5 A 162 ASP ALA GLN HIS THR GLN LYS VAL ILE GLN LYS LEU GLU SEQRES 6 A 162 ASP ILE GLY TYR LYS ILE GLU VAL HIS TRP MSE PRO SER SEQRES 7 A 162 ARG MSE GLU LEU LYS HIS GLU GLU TYR GLY TYR LEU ASP SEQRES 8 A 162 ILE HIS PRO ILE ASN LEU ASN ASP ASP GLY SER ILE THR SEQRES 9 A 162 GLN ALA ASN PRO GLU GLY GLY ASN TYR VAL PHE GLN ASN SEQRES 10 A 162 ASP TRP PHE SER GLU THR ASN TYR LYS ASP ARG LYS ILE SEQRES 11 A 162 PRO CYS ILE SER LYS GLU ALA GLN LEU LEU PHE HIS SER SEQRES 12 A 162 GLY TYR ASP LEU THR GLU THR ASP HIS PHE ASP ILE LYS SEQRES 13 A 162 ASN LEU LYS SER ILE THR SEQRES 1 B 162 GLY MSE LYS ASN ASN ASN VAL THR GLU LYS GLU LEU PHE SEQRES 2 B 162 TYR ILE LEU ASP LEU PHE GLU HIS MSE LYS VAL THR TYR SEQRES 3 B 162 TRP LEU ASP GLY GLY TRP GLY VAL ASP VAL LEU THR GLY SEQRES 4 B 162 LYS GLN GLN ARG GLU HIS ARG ASP ILE ASP ILE ASP PHE SEQRES 5 B 162 ASP ALA GLN HIS THR GLN LYS VAL ILE GLN LYS LEU GLU SEQRES 6 B 162 ASP ILE GLY TYR LYS ILE GLU VAL HIS TRP MSE PRO SER SEQRES 7 B 162 ARG MSE GLU LEU LYS HIS GLU GLU TYR GLY TYR LEU ASP SEQRES 8 B 162 ILE HIS PRO ILE ASN LEU ASN ASP ASP GLY SER ILE THR SEQRES 9 B 162 GLN ALA ASN PRO GLU GLY GLY ASN TYR VAL PHE GLN ASN SEQRES 10 B 162 ASP TRP PHE SER GLU THR ASN TYR LYS ASP ARG LYS ILE SEQRES 11 B 162 PRO CYS ILE SER LYS GLU ALA GLN LEU LEU PHE HIS SER SEQRES 12 B 162 GLY TYR ASP LEU THR GLU THR ASP HIS PHE ASP ILE LYS SEQRES 13 B 162 ASN LEU LYS SER ILE THR MODRES 4WH5 MSE A 21 MET MODIFIED RESIDUE MODRES 4WH5 MSE A 75 MET MODIFIED RESIDUE MODRES 4WH5 MSE A 79 MET MODIFIED RESIDUE MODRES 4WH5 MSE B 21 MET MODIFIED RESIDUE MODRES 4WH5 MSE B 75 MET MODIFIED RESIDUE MODRES 4WH5 MSE B 79 MET MODIFIED RESIDUE HET MSE A 21 8 HET MSE A 75 8 HET MSE A 79 13 HET MSE B 21 8 HET MSE B 75 8 HET MSE B 79 8 HET CL A 201 1 HET MG A 202 1 HET MG A 203 1 HET 3QB A 204 27 HET MG B 201 1 HET MG B 202 1 HET 3QB B 203 27 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM 3QB LINCOMYCIN HETSYN 3QB METHYL (5R)-5-[(1R,2R)-2-HYDROXY-1-{[(4R)-1-METHYL-4- HETSYN 2 3QB PROPYL-L-PROLYL]AMINO}PROPYL]-1-THIO-BETA-L- HETSYN 3 3QB ARABINOPYRANOSIDE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 MG 4(MG 2+) FORMUL 6 3QB 2(C18 H34 N2 O6 S) FORMUL 10 HOH *463(H2 O) HELIX 1 AA1 THR A 7 LYS A 22 1 16 HELIX 2 AA2 GLY A 29 GLY A 38 1 10 HELIX 3 AA3 HIS A 55 ILE A 66 1 12 HELIX 4 AA4 GLN A 115 ASP A 117 5 3 HELIX 5 AA5 SER A 133 HIS A 141 1 9 HELIX 6 AA6 SER A 142 LEU A 146 5 5 HELIX 7 AA7 THR A 147 SER A 159 1 13 HELIX 8 AA8 THR B 7 MSE B 21 1 15 HELIX 9 AA9 GLY B 29 THR B 37 1 9 HELIX 10 AB1 HIS B 55 ILE B 66 1 12 HELIX 11 AB2 GLN B 115 ASP B 117 5 3 HELIX 12 AB3 SER B 133 HIS B 141 1 9 HELIX 13 AB4 THR B 147 SER B 159 1 13 SHEET 1 AA1 5 TYR A 25 ASP A 28 0 SHEET 2 AA1 5 ASP A 46 ASP A 52 -1 O ASP A 50 N TRP A 26 SHEET 3 AA1 5 GLY A 87 LEU A 96 1 O ILE A 94 N PHE A 51 SHEET 4 AA1 5 ARG A 78 HIS A 83 -1 N LEU A 81 O LEU A 89 SHEET 5 AA1 5 LYS A 69 TRP A 74 -1 N LYS A 69 O LYS A 82 SHEET 1 AA2 5 TYR A 25 ASP A 28 0 SHEET 2 AA2 5 ASP A 46 ASP A 52 -1 O ASP A 50 N TRP A 26 SHEET 3 AA2 5 GLY A 87 LEU A 96 1 O ILE A 94 N PHE A 51 SHEET 4 AA2 5 ILE A 102 ALA A 105 -1 O THR A 103 N ASN A 95 SHEET 5 AA2 5 ASN A 111 PHE A 114 -1 O TYR A 112 N GLN A 104 SHEET 1 AA3 2 PHE A 119 TYR A 124 0 SHEET 2 AA3 2 ARG A 127 ILE A 132 -1 O ARG A 127 N TYR A 124 SHEET 1 AA4 5 TYR B 25 ASP B 28 0 SHEET 2 AA4 5 ASP B 46 ASP B 52 -1 O ASP B 48 N ASP B 28 SHEET 3 AA4 5 GLY B 87 LEU B 96 1 O ILE B 94 N PHE B 51 SHEET 4 AA4 5 ARG B 78 HIS B 83 -1 N LEU B 81 O LEU B 89 SHEET 5 AA4 5 LYS B 69 TRP B 74 -1 N GLU B 71 O GLU B 80 SHEET 1 AA5 5 TYR B 25 ASP B 28 0 SHEET 2 AA5 5 ASP B 46 ASP B 52 -1 O ASP B 48 N ASP B 28 SHEET 3 AA5 5 GLY B 87 LEU B 96 1 O ILE B 94 N PHE B 51 SHEET 4 AA5 5 ILE B 102 ALA B 105 -1 O THR B 103 N ASN B 95 SHEET 5 AA5 5 ASN B 111 VAL B 113 -1 O TYR B 112 N GLN B 104 SHEET 1 AA6 2 PHE B 119 TYR B 124 0 SHEET 2 AA6 2 ARG B 127 ILE B 132 -1 O ARG B 127 N TYR B 124 LINK C HIS A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N LYS A 22 1555 1555 1.33 LINK C TRP A 74 N MSE A 75 1555 1555 1.32 LINK C MSE A 75 N PRO A 76 1555 1555 1.35 LINK C ARG A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLU A 80 1555 1555 1.33 LINK C HIS B 20 N MSE B 21 1555 1555 1.32 LINK C MSE B 21 N LYS B 22 1555 1555 1.33 LINK C TRP B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N PRO B 76 1555 1555 1.34 LINK C ARG B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N GLU B 80 1555 1555 1.33 LINK OD1 ASP A 46 MG MG A 203 1555 1555 2.85 LINK OD2 ASP A 48 MG MG A 202 1555 1555 2.79 LINK OD2 ASP A 48 MG MG A 203 1555 1555 2.71 LINK MG MG A 202 O4 3QB A 204 1555 1555 2.67 LINK MG MG A 202 O HOH A 466 1555 1555 2.25 LINK MG MG A 202 O HOH A 518 1555 1555 2.50 LINK OD1 ASP B 46 MG MG B 202 1555 1555 2.67 LINK OD2 ASP B 48 MG MG B 201 1555 1555 2.91 LINK OD2 ASP B 48 MG MG B 202 1555 1555 2.75 LINK MG MG B 201 O HOH B 516 1555 1555 2.66 LINK MG MG B 201 O HOH B 527 1555 1555 2.23 LINK MG MG B 202 O HOH B 372 1555 1555 2.77 CISPEP 1 MSE A 75 PRO A 76 0 8.76 CISPEP 2 MSE B 75 PRO B 76 0 9.53 SITE 1 AC1 5 GLN A 115 ASN A 116 HOH A 341 HOH A 352 SITE 2 AC1 5 LYS B 155 SITE 1 AC2 6 ASP A 46 ASP A 48 MG A 203 3QB A 204 SITE 2 AC2 6 HOH A 466 HOH A 518 SITE 1 AC3 6 GLY A 29 GLY A 30 ASP A 46 ASP A 48 SITE 2 AC3 6 MG A 202 HOH A 449 SITE 1 AC4 12 ASP A 28 GLY A 29 GLY A 30 ASP A 50 SITE 2 AC4 12 HIS A 92 PHE A 119 GLN A 137 PHE A 140 SITE 3 AC4 12 MG A 202 HOH A 389 HOH A 466 TYR B 144 SITE 1 AC5 6 ASP B 46 ASP B 48 ASP B 90 3QB B 203 SITE 2 AC5 6 HOH B 516 HOH B 527 SITE 1 AC6 6 GLY B 29 GLY B 30 ASP B 46 ASP B 48 SITE 2 AC6 6 HOH B 372 HOH B 374 SITE 1 AC7 15 TYR A 144 ASP B 28 ASP B 48 ASP B 50 SITE 2 AC7 15 ARG B 78 ASP B 90 HIS B 92 PHE B 119 SITE 3 AC7 15 PHE B 140 MG B 201 HOH B 414 HOH B 432 SITE 4 AC7 15 HOH B 510 HOH B 516 HOH B 523 CRYST1 56.447 63.444 60.808 90.00 101.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017716 0.000000 0.003635 0.00000 SCALE2 0.000000 0.015762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016788 0.00000