HEADER IMMUNE SYSTEM 25-SEP-14 4WI4 TITLE STRUCTURAL MAPPING OF THE HUMAN IGG1 BINDING SITE FOR FCRN: HU3S193 FC TITLE 2 MUTATION S254A CAVEAT 4WI4 NAG D 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 120-317; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293F KEYWDS HUMAN IGG1, FCRN BINDING SITE, THERAPEUTIC ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.FARRUGIA,I.J.G.BURVENICH,A.M.SCOTT,P.A.RAMSLAND REVDAT 5 27-DEC-23 4WI4 1 HETSYN LINK REVDAT 4 29-JUL-20 4WI4 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 08-JAN-20 4WI4 1 REMARK REVDAT 2 13-SEP-17 4WI4 1 REMARK REVDAT 1 30-SEP-15 4WI4 0 JRNL AUTH I.J.G.BURVENICH,W.FARRUGIA,F.T.LEE,B.CATIMEL,Z.LIU,D.MAKRIS, JRNL AUTH 2 D.CAO,G.O'KEEFE,M.W.BRECHBIEL,D.KING,V.SPIRKOSKA,L.ALLAN, JRNL AUTH 3 P.A.RAMSLAND,A.M.SCOTT JRNL TITL STRUCTURAL AND FUNCTIONAL MAPPING OF HUMAN IGG1 BINDING SITE JRNL TITL 2 FOR FCRN IN VIVO USING HUMAN FCRN TRANSGENIC MICE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 13703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 6.0159 0.98 1350 152 0.2332 0.2682 REMARK 3 2 6.0159 - 4.7822 0.99 1296 143 0.2292 0.2853 REMARK 3 3 4.7822 - 4.1798 0.99 1252 140 0.1776 0.2582 REMARK 3 4 4.1798 - 3.7986 0.99 1253 139 0.2099 0.2650 REMARK 3 5 3.7986 - 3.5268 0.97 1223 136 0.2257 0.3495 REMARK 3 6 3.5268 - 3.3192 0.97 1218 135 0.2582 0.3382 REMARK 3 7 3.3192 - 3.1532 0.96 1221 136 0.2752 0.3925 REMARK 3 8 3.1532 - 3.0161 0.95 1180 130 0.3067 0.4054 REMARK 3 9 3.0161 - 2.9001 0.95 1173 130 0.3461 0.4352 REMARK 3 10 2.9001 - 2.8001 0.93 1166 130 0.0000 0.4312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 53.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.24550 REMARK 3 B22 (A**2) : -3.77150 REMARK 3 B33 (A**2) : 12.01710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3623 REMARK 3 ANGLE : 1.903 4949 REMARK 3 CHIRALITY : 0.115 590 REMARK 3 PLANARITY : 0.008 602 REMARK 3 DIHEDRAL : 30.183 1431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 240:262) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4581 -14.9985 22.8466 REMARK 3 T TENSOR REMARK 3 T11: 0.4067 T22: 0.3230 REMARK 3 T33: 0.5363 T12: -0.1423 REMARK 3 T13: 0.0155 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.4239 L22: 7.6182 REMARK 3 L33: 4.4756 L12: 2.2020 REMARK 3 L13: -3.1879 L23: -2.7236 REMARK 3 S TENSOR REMARK 3 S11: -0.2095 S12: 0.6641 S13: -0.9020 REMARK 3 S21: -1.1764 S22: 0.8304 S23: 0.4251 REMARK 3 S31: 0.3341 S32: -0.7757 S33: -0.4496 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 263:273) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8365 -15.9938 -1.5187 REMARK 3 T TENSOR REMARK 3 T11: 1.7688 T22: 1.6339 REMARK 3 T33: 1.0388 T12: -0.3847 REMARK 3 T13: -0.5739 T23: -0.2577 REMARK 3 L TENSOR REMARK 3 L11: 0.9972 L22: 0.2134 REMARK 3 L33: 2.4309 L12: -0.0377 REMARK 3 L13: 1.1344 L23: 0.4489 REMARK 3 S TENSOR REMARK 3 S11: -0.1370 S12: 0.3361 S13: -0.1050 REMARK 3 S21: -0.2809 S22: -0.7619 S23: 0.6819 REMARK 3 S31: 0.8103 S32: -0.7668 S33: 0.4712 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 274:302) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6863 -18.0715 7.5720 REMARK 3 T TENSOR REMARK 3 T11: 1.0359 T22: 0.7434 REMARK 3 T33: 0.6630 T12: -0.2109 REMARK 3 T13: -0.2414 T23: -0.1558 REMARK 3 L TENSOR REMARK 3 L11: 8.3676 L22: 4.2128 REMARK 3 L33: 2.2757 L12: 1.2376 REMARK 3 L13: 0.0270 L23: 0.2906 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: 1.4932 S13: -0.6089 REMARK 3 S21: -1.5822 S22: -0.0621 S23: 1.2655 REMARK 3 S31: 0.6901 S32: -0.8054 S33: -0.0572 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 303:444) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2061 -8.4311 34.8615 REMARK 3 T TENSOR REMARK 3 T11: -0.0420 T22: 0.0675 REMARK 3 T33: 0.4193 T12: 0.0336 REMARK 3 T13: -0.0388 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 4.3236 L22: 2.6663 REMARK 3 L33: 1.0210 L12: -0.4439 REMARK 3 L13: -0.8910 L23: 0.4247 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: -0.3062 S13: -0.2287 REMARK 3 S21: -0.1009 S22: 0.1281 S23: -0.0015 REMARK 3 S31: 0.0044 S32: 0.0376 S33: 0.0756 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 238:274) REMARK 3 ORIGIN FOR THE GROUP (A): -31.6029 12.8276 10.9203 REMARK 3 T TENSOR REMARK 3 T11: 1.1234 T22: 0.3181 REMARK 3 T33: 0.6652 T12: -0.2275 REMARK 3 T13: 0.1963 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 5.5609 L22: 1.3396 REMARK 3 L33: 1.6382 L12: -0.3197 REMARK 3 L13: -1.0404 L23: -1.0116 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: 0.9585 S13: -0.0267 REMARK 3 S21: -1.7975 S22: 0.0406 S23: -0.3628 REMARK 3 S31: -0.0245 S32: 0.0069 S33: -0.3442 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 275:332) REMARK 3 ORIGIN FOR THE GROUP (A): -35.2978 12.5677 6.5564 REMARK 3 T TENSOR REMARK 3 T11: 1.4578 T22: 0.4352 REMARK 3 T33: 0.6968 T12: -0.2034 REMARK 3 T13: 0.1765 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.5548 L22: 1.6265 REMARK 3 L33: 4.0602 L12: 0.2990 REMARK 3 L13: -0.8821 L23: -1.3413 REMARK 3 S TENSOR REMARK 3 S11: -0.6116 S12: 0.8171 S13: 0.0629 REMARK 3 S21: -2.1414 S22: 0.4426 S23: -0.3612 REMARK 3 S31: 0.8186 S32: 0.0133 S33: 0.1939 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 333:362) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8282 2.4333 36.3042 REMARK 3 T TENSOR REMARK 3 T11: 0.4090 T22: 0.0499 REMARK 3 T33: 0.3260 T12: -0.0085 REMARK 3 T13: 0.1048 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 4.7181 L22: 2.8600 REMARK 3 L33: 3.3723 L12: -1.0602 REMARK 3 L13: 0.1486 L23: -0.5780 REMARK 3 S TENSOR REMARK 3 S11: -0.5719 S12: -0.5322 S13: 0.7425 REMARK 3 S21: -0.2289 S22: 0.0431 S23: -0.3355 REMARK 3 S31: 0.2038 S32: -0.1419 S33: 0.3369 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 363:444) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4740 7.7679 39.8119 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.3275 REMARK 3 T33: 0.5948 T12: 0.0252 REMARK 3 T13: 0.0566 T23: -0.1037 REMARK 3 L TENSOR REMARK 3 L11: 5.2512 L22: 2.4185 REMARK 3 L33: 1.7700 L12: -0.9713 REMARK 3 L13: 0.9366 L23: -0.9075 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: -0.8756 S13: 0.8072 REMARK 3 S21: 0.1614 S22: 0.1972 S23: -0.1380 REMARK 3 S31: -0.1927 S32: -0.0447 S33: -0.0943 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ 240:291 OR RESSEQ REMARK 3 299:444 ) AND (NOT ELEMENT H) AND (NOT REMARK 3 ELEMENT D) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ 240:291 OR RESSEQ REMARK 3 299:444 ) AND (NOT ELEMENT H) AND (NOT REMARK 3 ELEMENT D) REMARK 3 ATOM PAIRS NUMBER : 1582 REMARK 3 RMSD : 0.137 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, 0.1 M MES, 25% V/V ETHYLENE REMARK 280 GLYCOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.57750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.60350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.55700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.60350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.57750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.55700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 238 REMARK 465 SER A 239 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 342 O HOH A 601 1.81 REMARK 500 OG SER B 383 O VAL B 422 2.02 REMARK 500 O SER B 267 OH TYR B 300 2.03 REMARK 500 O HOH A 604 O HOH A 605 2.04 REMARK 500 OG SER A 383 O VAL A 422 2.04 REMARK 500 OG SER B 403 O HOH B 615 2.06 REMARK 500 OG SER A 364 O HOH A 603 2.06 REMARK 500 O SER A 267 OH TYR A 300 2.10 REMARK 500 O GLU A 293 NE2 GLN A 295 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS B 268 O HIS B 285 4555 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 300 CE1 TYR A 300 CZ -0.114 REMARK 500 GLN A 386 CD GLN A 386 OE1 -0.170 REMARK 500 GLN A 419 CB GLN A 419 CG -0.174 REMARK 500 VAL B 266 CB VAL B 266 CG2 -0.150 REMARK 500 VAL B 266 C VAL B 266 O 0.118 REMARK 500 TYR B 300 CG TYR B 300 CD2 0.081 REMARK 500 TYR B 300 CD1 TYR B 300 CE1 -0.131 REMARK 500 GLN B 386 CD GLN B 386 OE1 -0.152 REMARK 500 GLN B 419 CB GLN B 419 CG -0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 263 CG1 - CB - CG2 ANGL. DEV. = -11.9 DEGREES REMARK 500 VAL A 266 CG1 - CB - CG2 ANGL. DEV. = 11.0 DEGREES REMARK 500 PRO A 291 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 ILE A 332 CG1 - CB - CG2 ANGL. DEV. = -13.8 DEGREES REMARK 500 GLU B 272 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 PRO B 291 CA - C - N ANGL. DEV. = 18.3 DEGREES REMARK 500 ARG B 292 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR B 300 CZ - CE2 - CD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 265 70.50 72.06 REMARK 500 GLU A 269 -64.55 -29.37 REMARK 500 ASN A 286 31.73 -87.44 REMARK 500 GLU A 294 89.52 -44.68 REMARK 500 ASN A 297 33.73 -61.70 REMARK 500 SER A 298 17.95 46.29 REMARK 500 ARG A 301 97.71 -169.23 REMARK 500 ALA A 431 11.61 -69.01 REMARK 500 ASN A 434 17.84 55.45 REMARK 500 TYR A 436 114.83 -166.03 REMARK 500 LEU A 441 118.69 -173.54 REMARK 500 ASP B 265 74.85 73.84 REMARK 500 GLU B 269 -65.42 -29.67 REMARK 500 ASN B 286 35.63 -87.09 REMARK 500 ARG B 292 98.54 110.09 REMARK 500 GLU B 294 -175.59 -56.23 REMARK 500 TYR B 296 55.50 -108.18 REMARK 500 ASN B 297 -3.67 -151.55 REMARK 500 SER B 298 29.65 81.33 REMARK 500 ARG B 301 99.17 -164.76 REMARK 500 TYR B 373 138.19 -172.57 REMARK 500 PRO B 374 -172.38 -69.01 REMARK 500 ASN B 434 14.74 57.94 REMARK 500 TYR B 436 115.76 -167.43 REMARK 500 LEU B 441 118.63 -171.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 291 ARG B 292 32.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 4WI4 A 238 444 UNP P01857 IGHG1_HUMAN 121 327 DBREF 4WI4 B 238 444 UNP P01857 IGHG1_HUMAN 121 327 SEQADV 4WI4 ALA A 254 UNP P01857 SER 137 ENGINEERED MUTATION SEQADV 4WI4 ALA B 254 UNP P01857 SER 137 ENGINEERED MUTATION SEQRES 1 A 207 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 A 207 LEU MET ILE ALA ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 A 207 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 4 A 207 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 A 207 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 6 A 207 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 A 207 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 A 207 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 9 A 207 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 A 207 ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 A 207 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 A 207 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 13 A 207 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 A 207 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 A 207 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 A 207 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 207 PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP THR SEQRES 2 B 207 LEU MET ILE ALA ARG THR PRO GLU VAL THR CYS VAL VAL SEQRES 3 B 207 VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN SEQRES 4 B 207 TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR SEQRES 5 B 207 LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL SEQRES 6 B 207 VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN SEQRES 7 B 207 GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU SEQRES 8 B 207 PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY SEQRES 9 B 207 GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER SEQRES 10 B 207 ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS SEQRES 11 B 207 LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU SEQRES 12 B 207 TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR SEQRES 13 B 207 THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU SEQRES 14 B 207 TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN SEQRES 15 B 207 GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU SEQRES 16 B 207 HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET NAG C 7 14 HET FUC C 8 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HET EDO A 509 4 HET EDO B 509 4 HET EDO B 510 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *33(H2 O) HELIX 1 AA1 LYS A 246 LEU A 251 1 6 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 LEU A 358 5 5 HELIX 4 AA4 LYS A 414 GLY A 420 1 7 HELIX 5 AA5 LEU A 432 TYR A 436 5 5 HELIX 6 AA6 LYS B 246 LEU B 251 1 6 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 LEU B 358 5 5 HELIX 9 AA9 LYS B 414 GLY B 420 1 7 HELIX 10 AB1 LEU B 432 TYR B 436 5 5 SHEET 1 AA1 2 GLU A 258 SER A 267 0 SHEET 2 AA1 2 THR A 299 THR A 307 -1 O LEU A 306 N VAL A 259 SHEET 1 AA2 4 VAL A 282 VAL A 284 0 SHEET 2 AA2 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA2 4 TYR A 319 SER A 324 -1 O LYS A 320 N TYR A 278 SHEET 4 AA2 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA3 4 GLN A 347 LEU A 351 0 SHEET 2 AA3 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA3 4 PHE A 404 ASP A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA3 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O THR A 366 N LEU A 351 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 AA4 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA5 4 GLN A 386 PRO A 387 0 SHEET 2 AA5 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA5 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA5 4 THR A 437 LEU A 441 -1 O LYS A 439 N CYS A 425 SHEET 1 AA6 2 GLU B 258 VAL B 266 0 SHEET 2 AA6 2 TYR B 300 THR B 307 -1 O LEU B 306 N VAL B 259 SHEET 1 AA7 4 VAL B 282 VAL B 284 0 SHEET 2 AA7 4 LYS B 274 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA7 4 GLU B 318 SER B 324 -1 O LYS B 320 N TYR B 278 SHEET 4 AA7 4 ILE B 332 SER B 337 -1 O LYS B 334 N CYS B 321 SHEET 1 AA8 4 GLN B 347 LEU B 351 0 SHEET 2 AA8 4 GLN B 362 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 AA8 4 PHE B 404 ASP B 413 -1 O VAL B 412 N VAL B 363 SHEET 4 AA8 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AA9 4 GLN B 347 LEU B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O THR B 366 N LEU B 351 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O VAL B 412 N VAL B 363 SHEET 4 AA9 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB1 4 GLN B 386 PRO B 387 0 SHEET 2 AB1 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB1 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB1 4 THR B 437 LEU B 441 -1 O LYS B 439 N CYS B 425 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.04 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.05 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.03 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.02 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.47 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.44 LINK O2 MAN C 6 C1 NAG C 7 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.46 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.43 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.45 CISPEP 1 TYR A 373 PRO A 374 0 -3.28 CISPEP 2 TYR B 373 PRO B 374 0 -7.40 CRYST1 49.155 79.114 141.207 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020344 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007082 0.00000