HEADER IMMUNE SYSTEM 25-SEP-14 4WI7 TITLE STRUCTURAL MAPPING OF THE HUMAN IGG1 BINDING SITE FOR FCRN: HU3S193 FC TITLE 2 MUTATION H435A COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGHG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: 293F KEYWDS HUMAN IGG1, FCRN BINDING SITE, THERAPEUTIC ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR W.FARRUGIA,I.J.G.BURVENICH,A.M.SCOTT,P.A.RAMSLAND REVDAT 5 27-DEC-23 4WI7 1 HETSYN LINK REVDAT 4 29-JUL-20 4WI7 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 08-JAN-20 4WI7 1 REMARK REVDAT 2 13-SEP-17 4WI7 1 REMARK REVDAT 1 30-SEP-15 4WI7 0 JRNL AUTH I.J.G.BURVENICH,W.FARRUGIA,F.T.LEE,B.CATIMEL,Z.LIU,D.MAKRIS, JRNL AUTH 2 D.CAO,G.O'KEEFE,M.W.BRECHBIEL,D.KING,V.SPIRKOSKA,L.ALLAN, JRNL AUTH 3 P.A.RAMSLAND,A.M.SCOTT JRNL TITL STRUCTURAL AND FUNCTIONAL MAPPING OF HUMAN IGG1 BINDING SITE JRNL TITL 2 FOR FCRN IN VIVO USING HUMAN FCRN TRANSGENIC MICE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 43092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.640 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.5741 1.00 3165 155 0.2458 0.2701 REMARK 3 2 4.5741 - 3.6327 1.00 3040 147 0.1791 0.2119 REMARK 3 3 3.6327 - 3.1741 1.00 2981 145 0.2335 0.2754 REMARK 3 4 3.1741 - 2.8841 1.00 2943 144 0.2277 0.2790 REMARK 3 5 2.8841 - 2.6776 1.00 2988 144 0.2214 0.2656 REMARK 3 6 2.6776 - 2.5198 1.00 2948 144 0.2211 0.2714 REMARK 3 7 2.5198 - 2.3936 1.00 2933 143 0.2319 0.2993 REMARK 3 8 2.3936 - 2.2895 1.00 2910 142 0.2454 0.3286 REMARK 3 9 2.2895 - 2.2014 1.00 2946 143 0.2418 0.2731 REMARK 3 10 2.2014 - 2.1254 1.00 2892 141 0.2332 0.3028 REMARK 3 11 2.1254 - 2.0590 1.00 2948 143 0.2542 0.3381 REMARK 3 12 2.0590 - 2.0002 1.00 2910 141 0.2648 0.2899 REMARK 3 13 2.0002 - 1.9475 0.98 2850 139 0.3043 0.3498 REMARK 3 14 1.9475 - 1.9000 0.92 2639 128 0.0000 0.4010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.12 REMARK 3 B_SOL : 30.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.41450 REMARK 3 B22 (A**2) : 1.24970 REMARK 3 B33 (A**2) : 4.16480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3632 REMARK 3 ANGLE : 1.635 4964 REMARK 3 CHIRALITY : 0.109 592 REMARK 3 PLANARITY : 0.010 606 REMARK 3 DIHEDRAL : 28.979 1436 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 237:251) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2447 -16.3413 -19.8484 REMARK 3 T TENSOR REMARK 3 T11: 0.1415 T22: 0.2619 REMARK 3 T33: 0.1218 T12: 0.0213 REMARK 3 T13: -0.0039 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.9904 L22: 1.9368 REMARK 3 L33: 5.2143 L12: 0.3938 REMARK 3 L13: 0.0309 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.7866 S13: -0.1592 REMARK 3 S21: 0.1199 S22: -0.0452 S23: -0.4509 REMARK 3 S31: -0.1656 S32: 0.4694 S33: -0.1004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 252:264) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2560 -21.4270 -22.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.1366 REMARK 3 T33: 0.2041 T12: -0.0361 REMARK 3 T13: 0.0380 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 6.8666 L22: 2.7185 REMARK 3 L33: 3.9380 L12: 1.5414 REMARK 3 L13: 4.2421 L23: 2.0989 REMARK 3 S TENSOR REMARK 3 S11: 0.2204 S12: -0.6185 S13: -0.6621 REMARK 3 S21: -0.1045 S22: -0.1026 S23: -0.1450 REMARK 3 S31: 0.0879 S32: -0.2816 S33: -0.1411 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 265:301) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4246 -24.0984 -7.1924 REMARK 3 T TENSOR REMARK 3 T11: 0.3558 T22: 0.7760 REMARK 3 T33: 0.2230 T12: 0.0511 REMARK 3 T13: -0.0194 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 2.1882 L22: 1.2573 REMARK 3 L33: 1.8037 L12: 0.0185 REMARK 3 L13: 1.3334 L23: 0.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.4067 S12: -0.6613 S13: -0.3680 REMARK 3 S21: 0.4956 S22: 0.2914 S23: -0.2411 REMARK 3 S31: 0.3553 S32: 0.3384 S33: 0.0065 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 302:336) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4730 -16.3970 -12.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.4343 REMARK 3 T33: 0.0567 T12: 0.0126 REMARK 3 T13: -0.0144 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 0.6385 L22: 2.2244 REMARK 3 L33: 5.0654 L12: -0.2157 REMARK 3 L13: 0.7021 L23: -0.3779 REMARK 3 S TENSOR REMARK 3 S11: -0.1846 S12: -0.7084 S13: 0.1535 REMARK 3 S21: 0.4430 S22: -0.0207 S23: -0.1053 REMARK 3 S31: -0.0991 S32: -0.1384 S33: 0.1873 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 337:361) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1013 -4.9859 -42.1759 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: -0.0542 REMARK 3 T33: 0.1171 T12: -0.0412 REMARK 3 T13: -0.0363 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 4.6976 L22: 2.2640 REMARK 3 L33: 4.5497 L12: -0.0993 REMARK 3 L13: -2.5739 L23: 0.0805 REMARK 3 S TENSOR REMARK 3 S11: 0.1369 S12: 0.3305 S13: 0.3711 REMARK 3 S21: -0.1335 S22: 0.0058 S23: -0.1266 REMARK 3 S31: -0.2158 S32: -0.0439 S33: -0.1191 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 362:403) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1164 -9.6841 -38.5695 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0167 REMARK 3 T33: 0.1442 T12: -0.0102 REMARK 3 T13: -0.0316 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 2.9462 L22: 2.8161 REMARK 3 L33: 3.1073 L12: 0.4526 REMARK 3 L13: -0.4721 L23: 0.0085 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.0469 S13: -0.2465 REMARK 3 S21: -0.0334 S22: -0.0451 S23: 0.1177 REMARK 3 S31: 0.1599 S32: -0.0048 S33: 0.0635 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 404:432) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2118 -12.3362 -44.8783 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.1340 REMARK 3 T33: 0.1664 T12: -0.0016 REMARK 3 T13: -0.0059 T23: -0.1206 REMARK 3 L TENSOR REMARK 3 L11: 3.4639 L22: 2.3587 REMARK 3 L33: 0.9617 L12: 0.0076 REMARK 3 L13: -0.0381 L23: -0.8799 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: 0.5462 S13: -0.3791 REMARK 3 S21: -0.1135 S22: -0.0693 S23: 0.0073 REMARK 3 S31: 0.2164 S32: -0.0222 S33: 0.0412 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 433:444) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3995 -12.6857 -47.7793 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.3110 REMARK 3 T33: 0.2003 T12: -0.0601 REMARK 3 T13: -0.0550 T23: -0.1601 REMARK 3 L TENSOR REMARK 3 L11: 4.8930 L22: 4.5145 REMARK 3 L33: 2.0480 L12: 0.3321 REMARK 3 L13: -2.5412 L23: -0.5207 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: 0.6982 S13: -0.3421 REMARK 3 S21: -0.3828 S22: -0.0751 S23: 0.2927 REMARK 3 S31: 0.2991 S32: -0.2606 S33: -0.1525 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 237:346) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8614 10.5190 -12.2972 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.3691 REMARK 3 T33: 0.0982 T12: 0.1263 REMARK 3 T13: 0.0062 T23: -0.3382 REMARK 3 L TENSOR REMARK 3 L11: 0.6693 L22: 1.0245 REMARK 3 L33: 1.8023 L12: 0.0319 REMARK 3 L13: -0.5386 L23: 0.6093 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: -0.5923 S13: 0.3521 REMARK 3 S21: 0.3693 S22: -0.0051 S23: 0.1209 REMARK 3 S31: -0.2613 S32: -0.0730 S33: 0.0224 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 347:444) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5084 4.1943 -42.1235 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: -0.0771 REMARK 3 T33: 0.1962 T12: -0.0168 REMARK 3 T13: -0.0260 T23: 0.0972 REMARK 3 L TENSOR REMARK 3 L11: 1.9783 L22: 2.7645 REMARK 3 L33: 1.6034 L12: 0.0766 REMARK 3 L13: -0.0587 L23: -0.2789 REMARK 3 S TENSOR REMARK 3 S11: 0.0424 S12: 0.2327 S13: 0.3887 REMARK 3 S21: -0.2328 S22: 0.0694 S23: 0.1182 REMARK 3 S31: -0.1511 S32: -0.1819 S33: -0.0191 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203816. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, 0.1 M MES, 25% V/V ETHYLENE REMARK 280 GLYCOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.57150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.45350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.33100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.45350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.57150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.33100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 388 O HOH A 697 2.03 REMARK 500 O ASN A 389 O HOH A 601 2.11 REMARK 500 OE1 GLN B 347 O HOH B 677 2.13 REMARK 500 OE1 GLN A 438 O HOH A 602 2.18 REMARK 500 O HOH B 672 O HOH B 687 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 374 C - N - CA ANGL. DEV. = 28.1 DEGREES REMARK 500 PRO A 374 C - N - CD ANGL. DEV. = -40.0 DEGREES REMARK 500 PRO B 374 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 PRO B 374 C - N - CD ANGL. DEV. = -27.9 DEGREES REMARK 500 LEU B 406 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 374 138.28 38.51 REMARK 500 ASN A 384 45.63 39.70 REMARK 500 ASN A 389 -77.03 -67.13 REMARK 500 ASN A 390 78.21 -69.19 REMARK 500 ASN A 434 16.50 53.45 REMARK 500 GLN B 295 129.85 59.09 REMARK 500 VAL B 323 105.51 51.09 REMARK 500 PRO B 374 137.76 34.06 REMARK 500 ASN B 434 17.69 52.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 373 PRO A 374 -99.32 REMARK 500 TYR B 373 PRO B 374 -96.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 661 DISTANCE = 6.32 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WI2 RELATED DB: PDB REMARK 900 RELATED ID: 4WI3 RELATED DB: PDB REMARK 900 RELATED ID: 4WI4 RELATED DB: PDB REMARK 900 RELATED ID: 4WI5 RELATED DB: PDB REMARK 900 RELATED ID: 4WI6 RELATED DB: PDB REMARK 900 RELATED ID: 4WI8 RELATED DB: PDB REMARK 900 RELATED ID: 4WI9 RELATED DB: PDB DBREF 4WI7 A 237 444 UNP P01857 IGHG1_HUMAN 120 327 DBREF 4WI7 B 237 444 UNP P01857 IGHG1_HUMAN 120 327 SEQADV 4WI7 ALA A 435 UNP P01857 HIS 318 ENGINEERED MUTATION SEQADV 4WI7 ALA B 435 UNP P01857 HIS 318 ENGINEERED MUTATION SEQRES 1 A 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 A 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 A 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 A 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 A 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 A 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 A 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 A 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 A 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 A 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 A 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 A 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 A 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 A 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 A 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 A 208 LEU HIS ASN ALA TYR THR GLN LYS SER LEU SER LEU SER SEQRES 1 B 208 GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS ASP SEQRES 2 B 208 THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS VAL SEQRES 3 B 208 VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE SEQRES 4 B 208 ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS SEQRES 5 B 208 THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG SEQRES 6 B 208 VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU SEQRES 7 B 208 ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA SEQRES 8 B 208 LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS SEQRES 9 B 208 GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SEQRES 10 B 208 SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR SEQRES 11 B 208 CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL SEQRES 12 B 208 GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS SEQRES 13 B 208 THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE SEQRES 14 B 208 LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN SEQRES 15 B 208 GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA SEQRES 16 B 208 LEU HIS ASN ALA TYR THR GLN LYS SER LEU SER LEU SER HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET NAG C 7 14 HET FUC C 8 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HET EDO A 509 4 HET EDO B 509 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *188(H2 O) HELIX 1 AA1 LYS A 246 MET A 252 1 7 HELIX 2 AA2 LEU A 309 ASN A 315 1 7 HELIX 3 AA3 SER A 354 LYS A 360 5 7 HELIX 4 AA4 LYS A 414 GLY A 420 1 7 HELIX 5 AA5 LEU A 432 ASN A 434 5 3 HELIX 6 AA6 LYS B 246 MET B 252 1 7 HELIX 7 AA7 LEU B 309 ASN B 315 1 7 HELIX 8 AA8 SER B 354 LYS B 360 5 7 HELIX 9 AA9 LYS B 414 GLN B 419 1 6 HELIX 10 AB1 LEU B 432 ASN B 434 5 3 SHEET 1 AA1 4 SER A 239 PHE A 243 0 SHEET 2 AA1 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA1 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA1 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 AA2 4 SER A 239 PHE A 243 0 SHEET 2 AA2 4 GLU A 258 VAL A 266 -1 O THR A 260 N PHE A 243 SHEET 3 AA2 4 TYR A 300 THR A 307 -1 O SER A 304 N CYS A 261 SHEET 4 AA2 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 AA3 4 VAL A 282 VAL A 284 0 SHEET 2 AA3 4 LYS A 274 VAL A 279 -1 N VAL A 279 O VAL A 282 SHEET 3 AA3 4 TYR A 319 SER A 324 -1 O LYS A 320 N TYR A 278 SHEET 4 AA3 4 ILE A 332 ILE A 336 -1 O ILE A 336 N TYR A 319 SHEET 1 AA4 4 GLN A 347 LEU A 351 0 SHEET 2 AA4 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA4 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA4 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 AA5 4 GLN A 347 LEU A 351 0 SHEET 2 AA5 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 AA5 4 PHE A 404 ASP A 413 -1 O LEU A 410 N LEU A 365 SHEET 4 AA5 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 AA6 4 GLN A 386 PRO A 387 0 SHEET 2 AA6 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 AA6 4 PHE A 423 MET A 428 -1 O SER A 426 N GLU A 380 SHEET 4 AA6 4 TYR A 436 LEU A 441 -1 O LEU A 441 N PHE A 423 SHEET 1 AA7 4 SER B 239 PHE B 243 0 SHEET 2 AA7 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 AA7 4 TYR B 300 THR B 307 -1 O TYR B 300 N VAL B 266 SHEET 4 AA7 4 LYS B 288 THR B 289 -1 N LYS B 288 O VAL B 305 SHEET 1 AA8 4 VAL B 282 VAL B 284 0 SHEET 2 AA8 4 TRP B 277 VAL B 279 -1 N VAL B 279 O VAL B 282 SHEET 3 AA8 4 TYR B 319 CYS B 321 -1 O LYS B 320 N TYR B 278 SHEET 4 AA8 4 LYS B 334 ILE B 336 -1 O ILE B 336 N TYR B 319 SHEET 1 AA9 4 GLN B 347 LEU B 351 0 SHEET 2 AA9 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AA9 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AA9 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 AB1 4 GLN B 347 LEU B 351 0 SHEET 2 AB1 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 AB1 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 AB1 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 AB2 4 GLN B 386 PRO B 387 0 SHEET 2 AB2 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 AB2 4 PHE B 423 MET B 428 -1 O SER B 426 N GLU B 380 SHEET 4 AB2 4 TYR B 436 LEU B 441 -1 O LYS B 439 N CYS B 425 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.03 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.05 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.02 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.05 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.43 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.42 LINK O2 MAN C 6 C1 NAG C 7 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.46 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.43 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.42 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.44 CRYST1 49.143 74.662 146.907 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006807 0.00000