HEADER LIGASE 26-SEP-14 4WIO TITLE CRYSTAL STRUCTURE OF THE C89A GMP SYNTHETASE INACTIVE MUTANT FROM TITLE 2 PLASMODIUM FALCIPARUM IN COMPLEX WITH GLUTAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-555; COMPND 5 EC: 6.3.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: ISOLATE 3D7; SOURCE 5 GENE: PF10_0123; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS GMP SYNTHETASE, PURINE SALVAGE PATHWAY, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BALLUT,S.VIOLOT,R.HASER,N.AGHAJARI REVDAT 4 23-OCT-24 4WIO 1 REMARK REVDAT 3 10-JAN-24 4WIO 1 REMARK REVDAT 2 09-DEC-15 4WIO 1 JRNL REVDAT 1 02-DEC-15 4WIO 0 JRNL AUTH L.BALLUT,S.VIOLOT,S.SHIVAKUMARASWAMY,L.P.THOTA,M.SATHYA, JRNL AUTH 2 J.KUNALA,B.W.DIJKSTRA,R.TERREUX,R.HASER,H.BALARAM,N.AGHAJARI JRNL TITL ACTIVE SITE COUPLING IN PLASMODIUM FALCIPARUM GMP SYNTHETASE JRNL TITL 2 IS TRIGGERED BY DOMAIN ROTATION. JRNL REF NAT COMMUN V. 6 8930 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26592566 JRNL DOI 10.1038/NCOMMS9930 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.9900 - 3.9700 1.00 2657 139 0.2547 0.2942 REMARK 3 2 3.9700 - 3.4700 1.00 2619 137 0.2827 0.3215 REMARK 3 3 3.4700 - 3.1500 1.00 2614 137 0.3276 0.3840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4119 REMARK 3 ANGLE : 0.638 5607 REMARK 3 CHIRALITY : 0.045 646 REMARK 3 PLANARITY : 0.002 727 REMARK 3 DIHEDRAL : 10.284 1425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000203832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07812 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11311 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 61.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 22.5% (W/V) PEG REMARK 280 1000 AND 10 MM GLN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.39000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.46000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.58500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.46000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.19500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.46000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.46000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.58500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.46000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.46000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.19500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.39000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 TYR A 6 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 SER A 136 REMARK 465 THR A 152 REMARK 465 CYS A 153 REMARK 465 ASN A 390 REMARK 465 VAL A 391 REMARK 465 GLY A 392 REMARK 465 GLY A 393 REMARK 465 LEU A 394 REMARK 465 PRO A 395 REMARK 465 LYS A 396 REMARK 465 SER A 483 REMARK 465 SER A 484 REMARK 465 LYS A 485 REMARK 465 SER A 486 REMARK 465 VAL A 487 REMARK 465 GLY A 488 REMARK 465 VAL A 489 REMARK 465 ARG A 490 REMARK 465 GLY A 491 REMARK 465 ASP A 492 REMARK 465 ALA A 493 REMARK 465 ARG A 494 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 30 CD CE NZ REMARK 470 PHE A 32 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 VAL A 40 CG1 CG2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 MET A 48 CG SD CE REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ILE A 83 CG1 CG2 CD1 REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ASN A 125 CG OD1 ND2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 SER A 138 OG REMARK 470 ASP A 141 OD1 OD2 REMARK 470 LEU A 142 CD1 CD2 REMARK 470 ASN A 150 CG OD1 ND2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 TYR A 207 OH REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 PHE A 235 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 ILE A 238 CG1 CG2 CD1 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 240 CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 241 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 LYS A 246 CD CE NZ REMARK 470 GLU A 249 CD OE1 OE2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ILE A 277 CG1 CG2 CD1 REMARK 470 LYS A 279 CD CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 305 NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 ASP A 357 CG OD1 OD2 REMARK 470 ILE A 358 CG1 CG2 CD1 REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 LYS A 376 NZ REMARK 470 SER A 378 OG REMARK 470 ASN A 397 CG OD1 ND2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LEU A 402 CG CD1 CD2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 LYS A 411 CG CD CE NZ REMARK 470 LYS A 415 CD CE NZ REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 LYS A 466 CE NZ REMARK 470 SER A 495 OG REMARK 470 TYR A 496 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 506 CG CD CE NZ REMARK 470 LYS A 535 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 89 -102.26 53.65 REMARK 500 ARG A 120 -166.88 -112.46 REMARK 500 MET A 149 -151.07 -166.18 REMARK 500 PHE A 156 38.24 -99.57 REMARK 500 LYS A 232 35.28 -83.11 REMARK 500 LYS A 233 -96.42 57.10 REMARK 500 GLN A 234 -2.11 71.15 REMARK 500 PRO A 237 -75.45 -62.69 REMARK 500 ILE A 238 -139.63 60.15 REMARK 500 ASP A 317 76.41 -118.71 REMARK 500 SER A 378 92.14 -69.22 REMARK 500 LYS A 379 -62.78 -104.21 REMARK 500 PRO A 434 -178.72 -69.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLN A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WIM RELATED DB: PDB REMARK 900 4WIM CONTAINS THE UNLIGANTED WILD TYPE PROTEIN. REMARK 900 RELATED ID: 4WIN RELATED DB: PDB REMARK 900 4WIN CONTAINS ONLY THE WILD-TYPE GATASE DOMAIN OF THIS ENTRY. DBREF 4WIO A 2 555 UNP Q8IJR9 Q8IJR9_PLAF7 2 555 SEQADV 4WIO MET A -11 UNP Q8IJR9 INITIATING METHIONINE SEQADV 4WIO ALA A -10 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO SER A -9 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO HIS A -8 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO HIS A -7 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO HIS A -6 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO HIS A -5 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO HIS A -4 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO HIS A -3 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO GLY A -2 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO SER A -1 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO MET A 0 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO ALA A 1 UNP Q8IJR9 EXPRESSION TAG SEQADV 4WIO ALA A 89 UNP Q8IJR9 CYS 89 ENGINEERED MUTATION SEQRES 1 A 567 MET ALA SER HIS HIS HIS HIS HIS HIS GLY SER MET ALA SEQRES 2 A 567 GLU GLY GLU GLU TYR ASP LYS ILE LEU VAL LEU ASN PHE SEQRES 3 A 567 GLY SER GLN TYR PHE HIS LEU ILE VAL LYS ARG LEU ASN SEQRES 4 A 567 ASN ILE LYS ILE PHE SER GLU THR LYS ASP TYR GLY VAL SEQRES 5 A 567 GLU LEU LYS ASP ILE LYS ASP MET ASN ILE LYS GLY VAL SEQRES 6 A 567 ILE LEU SER GLY GLY PRO TYR SER VAL THR GLU ALA GLY SEQRES 7 A 567 SER PRO HIS LEU LYS LYS GLU VAL PHE GLU TYR PHE LEU SEQRES 8 A 567 GLU LYS LYS ILE PRO ILE PHE GLY ILE ALA TYR GLY MET SEQRES 9 A 567 GLN GLU ILE ALA VAL GLN MET ASN GLY GLU VAL LYS LYS SEQRES 10 A 567 SER LYS THR SER GLU TYR GLY CYS THR ASP VAL ASN ILE SEQRES 11 A 567 LEU ARG ASN ASP ASN ILE ASN ASN ILE THR TYR CYS ARG SEQRES 12 A 567 ASN PHE GLY ASP SER SER SER ALA MET ASP LEU TYR SER SEQRES 13 A 567 ASN TYR LYS LEU MET ASN GLU THR CYS CYS LEU PHE GLU SEQRES 14 A 567 ASN ILE LYS SER ASP ILE THR THR VAL TRP MET ASN HIS SEQRES 15 A 567 ASN ASP GLU VAL THR LYS ILE PRO GLU ASN PHE TYR LEU SEQRES 16 A 567 VAL SER SER SER GLU ASN CYS LEU ILE CYS SER ILE TYR SEQRES 17 A 567 ASN LYS GLU TYR ASN ILE TYR GLY VAL GLN TYR HIS PRO SEQRES 18 A 567 GLU VAL TYR GLU SER LEU ASP GLY GLU LEU MET PHE TYR SEQRES 19 A 567 ASN PHE ALA TYR ASN ILE CYS LYS CYS LYS LYS GLN PHE SEQRES 20 A 567 ASP PRO ILE ARG TYR HIS GLU LEU GLU LEU LYS ASN ILE SEQRES 21 A 567 GLU LYS TYR LYS HIS ASP HIS TYR VAL ILE ALA ALA MET SEQRES 22 A 567 SER GLY GLY ILE ASP SER THR VAL ALA ALA ALA TYR THR SEQRES 23 A 567 HIS LYS ILE PHE LYS GLU ARG PHE PHE GLY ILE PHE ILE SEQRES 24 A 567 ASP ASN GLY LEU LEU ARG LYS ASN GLU ALA GLU ASN VAL SEQRES 25 A 567 TYR THR PHE LEU LYS SER THR PHE PRO ASP MET ASN ILE SEQRES 26 A 567 THR LYS ILE ASP ALA SER GLU ASN PHE LEU SER ASN LEU SEQRES 27 A 567 GLN GLY VAL THR ASP PRO GLU GLN LYS ARG LYS ILE ILE SEQRES 28 A 567 GLY LYS LEU PHE ILE GLU GLU PHE GLU LYS ALA VAL ASN SEQRES 29 A 567 ASN ILE ASP ILE ASP ILE ASN LYS THR PHE LEU LEU GLN SEQRES 30 A 567 GLY THR LEU TYR PRO ASP ILE ILE GLU SER LYS CYS SER SEQRES 31 A 567 LYS ASN LEU SER ASP THR ILE LYS THR HIS HIS ASN VAL SEQRES 32 A 567 GLY GLY LEU PRO LYS ASN LEU LYS PHE LYS LEU PHE GLU SEQRES 33 A 567 PRO PHE LYS TYR LEU PHE LYS ASP ASP VAL LYS THR LEU SEQRES 34 A 567 SER ARG GLU LEU ASN LEU PRO GLU GLU ILE THR ASN ARG SEQRES 35 A 567 HIS PRO PHE PRO GLY PRO GLY LEU ALA ILE ARG VAL ILE SEQRES 36 A 567 GLY GLU ILE ASN LYS HIS LYS LEU ASN ILE LEU ARG GLU SEQRES 37 A 567 VAL ASP ASP ILE PHE ILE ASN ASP LEU LYS GLN TYR GLY SEQRES 38 A 567 LEU TYR ASN GLN ILE SER GLN ALA PHE ALA VAL LEU LEU SEQRES 39 A 567 SER SER LYS SER VAL GLY VAL ARG GLY ASP ALA ARG SER SEQRES 40 A 567 TYR ASP TYR VAL CYS VAL LEU ARG ALA VAL LYS THR SER SEQRES 41 A 567 SER PHE MET THR ALA ASN TRP TYR GLN ILE PRO TYR ASP SEQRES 42 A 567 ILE LEU ASP LYS ILE THR THR ARG ILE LEU SER GLU VAL SEQRES 43 A 567 LYS GLY VAL ASN ARG ILE LEU TYR ASP VAL SER SER LYS SEQRES 44 A 567 PRO PRO ALA THR ILE GLU PHE GLU HET GLN A 601 10 HETNAM GLN GLUTAMINE FORMUL 2 GLN C5 H10 N2 O3 FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 TYR A 18 ILE A 29 1 12 HELIX 2 AA2 LEU A 42 ASP A 47 1 6 HELIX 3 AA3 LYS A 71 LEU A 79 1 9 HELIX 4 AA4 ALA A 89 MET A 99 1 11 HELIX 5 AA5 ASP A 122 ILE A 127 5 6 HELIX 6 AA6 TYR A 129 PHE A 133 5 5 HELIX 7 AA7 ALA A 139 SER A 144 1 6 HELIX 8 AA8 ASP A 216 TYR A 226 1 11 HELIX 9 AA9 TYR A 240 GLU A 249 1 10 HELIX 10 AB1 LYS A 250 LYS A 252 5 3 HELIX 11 AB2 GLY A 264 VAL A 269 1 6 HELIX 12 AB3 ALA A 270 PHE A 278 1 9 HELIX 13 AB4 ASN A 295 PHE A 308 1 14 HELIX 14 AB5 ALA A 318 GLN A 327 1 10 HELIX 15 AB6 ASP A 331 ASN A 352 1 22 HELIX 16 AB7 LEU A 368 CYS A 377 1 10 HELIX 17 AB8 PHE A 410 LEU A 421 1 12 HELIX 18 AB9 GLU A 425 ARG A 430 1 6 HELIX 19 AC1 PRO A 436 VAL A 442 5 7 HELIX 20 AC2 ASN A 447 TYR A 468 1 22 HELIX 21 AC3 LEU A 470 ILE A 474 5 5 HELIX 22 AC4 PRO A 519 VAL A 534 1 16 SHEET 1 AA1 9 SER A 33 ASP A 37 0 SHEET 2 AA1 9 LYS A 8 ASN A 13 1 N VAL A 11 O LYS A 36 SHEET 3 AA1 9 ILE A 50 LEU A 55 1 O ILE A 54 N LEU A 12 SHEET 4 AA1 9 ILE A 85 ILE A 88 1 O PHE A 86 N LEU A 55 SHEET 5 AA1 9 ILE A 202 VAL A 205 1 O TYR A 203 N GLY A 87 SHEET 6 AA1 9 CYS A 190 ASN A 197 -1 N ASN A 197 O ILE A 202 SHEET 7 AA1 9 TYR A 182 SER A 187 -1 N SER A 187 O CYS A 190 SHEET 8 AA1 9 GLU A 102 ILE A 118 -1 N ASN A 117 O SER A 186 SHEET 9 AA1 9 ILE A 163 LYS A 176 -1 O VAL A 166 N THR A 114 SHEET 1 AA2 5 ASN A 312 ILE A 316 0 SHEET 2 AA2 5 PHE A 282 ILE A 287 1 N GLY A 284 O THR A 314 SHEET 3 AA2 5 TYR A 256 MET A 261 1 N VAL A 257 O PHE A 283 SHEET 4 AA2 5 THR A 361 LEU A 364 1 O PHE A 362 N TYR A 256 SHEET 5 AA2 5 LYS A 401 PHE A 403 1 O PHE A 403 N LEU A 363 SHEET 1 AA3 3 GLN A 476 LEU A 482 0 SHEET 2 AA3 3 TYR A 498 SER A 509 -1 O VAL A 499 N LEU A 482 SHEET 3 AA3 3 THR A 512 TRP A 515 -1 O THR A 512 N SER A 509 SHEET 1 AA4 3 GLN A 476 LEU A 482 0 SHEET 2 AA4 3 TYR A 498 SER A 509 -1 O VAL A 499 N LEU A 482 SHEET 3 AA4 3 VAL A 537 TYR A 542 1 O LEU A 541 N CYS A 500 SSBOND 1 CYS A 113 CYS A 377 1555 1555 2.03 CISPEP 1 LYS A 547 PRO A 548 0 -2.44 CISPEP 2 PRO A 548 PRO A 549 0 0.42 SITE 1 AC1 10 GLY A 58 TYR A 60 ALA A 89 TYR A 90 SITE 2 AC1 10 GLN A 93 ASN A 169 HIS A 170 ASN A 171 SITE 3 AC1 10 ASP A 172 HIS A 208 CRYST1 76.920 76.920 204.780 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004883 0.00000