HEADER PROTEIN BINDING/SIGNALING PROTEIN 01-OCT-14 4WJQ TITLE CRYSTAL STRUCTURE OF SUMO1 IN COMPLEX WITH DAXX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMALL UBIQUITIN-RELATED MODIFIER 1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 17-97; COMPND 5 SYNONYM: SUMO-1,GAP-MODIFYING PROTEIN 1,GMP1,SMT3 HOMOLOG 3,SENTRIN, COMPND 6 UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1,UBIQUITIN-LIKE PROTEIN SMT3C, COMPND 7 SMT3C,UBIQUITIN-LIKE PROTEIN UBL1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DAXX; COMPND 12 CHAIN: B, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-CL.43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS SUMO1, DAXX, HOMO SAPIENS, SUMO INTERACTION MOTIF, PHOSPHOSIM, KEYWDS 2 PROTEIN BINDING-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.CAPPADOCIA,X.H.MASCLE,V.BOURDEAU,S.TREMBLAY-BELZILE,M.CHAKER- AUTHOR 2 MARGOT,M.LUSSIER-PRICE,J.WADA,K.SAKAGUCHI,M.AUBRY,G.FERBEYRE, AUTHOR 3 J.G.OMICHINSKI REVDAT 4 27-SEP-23 4WJQ 1 REMARK REVDAT 3 22-NOV-17 4WJQ 1 SOURCE KEYWDS JRNL REMARK REVDAT 2 14-JAN-15 4WJQ 1 JRNL REVDAT 1 31-DEC-14 4WJQ 0 JRNL AUTH L.CAPPADOCIA,X.H.MASCLE,V.BOURDEAU,S.TREMBLAY-BELZILE, JRNL AUTH 2 M.CHAKER-MARGOT,M.LUSSIER-PRICE,J.WADA,K.SAKAGUCHI,M.AUBRY, JRNL AUTH 3 G.FERBEYRE,J.G.OMICHINSKI JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 PHOSPHORYLATION-DEPENDENT INTERACTION BETWEEN PML AND SUMO1. JRNL REF STRUCTURE V. 23 126 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 25497731 JRNL DOI 10.1016/J.STR.2014.10.015 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1555) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 39748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1707 - 3.2530 1.00 2945 159 0.1363 0.1709 REMARK 3 2 3.2530 - 2.5823 1.00 2880 153 0.1562 0.1851 REMARK 3 3 2.5823 - 2.2559 1.00 2856 155 0.1513 0.1673 REMARK 3 4 2.2559 - 2.0497 1.00 2853 147 0.1495 0.1702 REMARK 3 5 2.0497 - 1.9028 0.99 2831 148 0.1473 0.1642 REMARK 3 6 1.9028 - 1.7906 0.99 2821 142 0.1591 0.1649 REMARK 3 7 1.7906 - 1.7009 0.99 2814 159 0.1630 0.1965 REMARK 3 8 1.7009 - 1.6269 0.98 2784 147 0.1668 0.1883 REMARK 3 9 1.6269 - 1.5642 0.98 2737 137 0.1630 0.1980 REMARK 3 10 1.5642 - 1.5103 0.96 2735 151 0.1697 0.2261 REMARK 3 11 1.5103 - 1.4630 0.95 2692 148 0.1963 0.1869 REMARK 3 12 1.4630 - 1.4212 0.94 2649 132 0.2131 0.2293 REMARK 3 13 1.4212 - 1.3838 0.81 2243 125 0.2486 0.2376 REMARK 3 14 1.3838 - 1.3500 0.66 1903 102 0.2729 0.3136 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1460 REMARK 3 ANGLE : 1.235 1950 REMARK 3 CHIRALITY : 0.071 213 REMARK 3 PLANARITY : 0.006 253 REMARK 3 DIHEDRAL : 15.142 572 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 20:97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2367 -0.8605 32.0441 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.0946 REMARK 3 T33: 0.0974 T12: -0.0052 REMARK 3 T13: 0.0074 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.9394 L22: 1.6422 REMARK 3 L33: 0.5818 L12: -0.5423 REMARK 3 L13: 0.1955 L23: -0.0806 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0095 S13: -0.0113 REMARK 3 S21: 0.0355 S22: 0.0295 S23: -0.0265 REMARK 3 S31: -0.0203 S32: 0.0546 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 4:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2451 4.2142 35.0498 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1694 REMARK 3 T33: 0.1530 T12: -0.0334 REMARK 3 T13: -0.0248 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5067 L22: 0.4178 REMARK 3 L33: 0.3219 L12: -0.4336 REMARK 3 L13: -0.3725 L23: 0.3620 REMARK 3 S TENSOR REMARK 3 S11: 0.2178 S12: 0.0283 S13: -0.0075 REMARK 3 S21: 0.0024 S22: 0.0685 S23: -0.0514 REMARK 3 S31: 0.1865 S32: -0.2619 S33: 0.1369 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 11:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6895 8.7338 26.0197 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1412 REMARK 3 T33: 0.1667 T12: -0.0134 REMARK 3 T13: 0.0307 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 0.0514 L22: 0.5688 REMARK 3 L33: 1.1049 L12: 0.0224 REMARK 3 L13: 0.0031 L23: 0.7810 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: 0.0958 S13: 0.2350 REMARK 3 S21: -0.2043 S22: -0.1531 S23: -0.0468 REMARK 3 S31: -0.1018 S32: -0.0144 S33: -0.1472 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN C AND RESID 18:93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4087 -5.6933 8.0756 REMARK 3 T TENSOR REMARK 3 T11: 0.1057 T22: 0.1046 REMARK 3 T33: 0.0950 T12: 0.0004 REMARK 3 T13: -0.0037 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.6422 L22: 0.9545 REMARK 3 L33: 0.7408 L12: -0.2410 REMARK 3 L13: 0.2767 L23: 0.3182 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.0148 S13: -0.0111 REMARK 3 S21: 0.0231 S22: -0.0020 S23: -0.0166 REMARK 3 S31: 0.0124 S32: -0.0342 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN D AND RESID 7:14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9153 -12.9879 1.6166 REMARK 3 T TENSOR REMARK 3 T11: 0.1612 T22: 0.1701 REMARK 3 T33: 0.1218 T12: -0.0186 REMARK 3 T13: -0.0303 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.2886 L22: 0.1933 REMARK 3 L33: 0.0084 L12: -0.2387 REMARK 3 L13: -0.0378 L23: 0.0155 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.0591 S13: -0.0161 REMARK 3 S21: -0.2325 S22: -0.0786 S23: 0.1577 REMARK 3 S31: 0.0467 S32: -0.2552 S33: -0.0604 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN D AND RESID 15:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9776 -15.7980 18.1254 REMARK 3 T TENSOR REMARK 3 T11: 1.3082 T22: 0.9383 REMARK 3 T33: 0.8211 T12: 0.2285 REMARK 3 T13: -0.0121 T23: 0.0729 REMARK 3 L TENSOR REMARK 3 L11: 0.1119 L22: 0.0324 REMARK 3 L33: 0.0078 L12: 0.0474 REMARK 3 L13: 0.0318 L23: 0.0146 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: 0.0021 S13: -0.0229 REMARK 3 S21: 0.0531 S22: -0.0700 S23: 0.0034 REMARK 3 S31: 0.0893 S32: -0.0995 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WJQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000202247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2UYZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE, 26% PEG3350, REMARK 280 10 MM CALCIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.20100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 LYS A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 GLY B 3 REMARK 465 ASP B 16 REMARK 465 SER B 17 REMARK 465 ASP B 18 REMARK 465 TYR B 19 REMARK 465 GLY C 15 REMARK 465 SER C 16 REMARK 465 LYS C 17 REMARK 465 GLN C 94 REMARK 465 THR C 95 REMARK 465 GLY C 96 REMARK 465 GLY C 97 REMARK 465 GLY D 3 REMARK 465 SER D 4 REMARK 465 GLY D 5 REMARK 465 GLU D 6 REMARK 465 TYR D 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 104 O HOH A 171 2.10 REMARK 500 O HOH A 190 O HOH A 197 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 105 O HOH C 127 2445 2.10 REMARK 500 O HOH A 102 O HOH A 143 2656 2.10 REMARK 500 O HOH A 129 O HOH A 171 2556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 85 -0.03 82.12 REMARK 500 SER D 17 92.53 -168.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 95 GLY A 96 -146.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 124 DISTANCE = 5.88 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WJO RELATED DB: PDB REMARK 900 RELATED ID: 4WJP RELATED DB: PDB REMARK 900 RELATED ID: 4WJQ RELATED DB: PDB DBREF 4WJQ A 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 4WJQ B 3 19 PDB 4WJQ 4WJQ 3 19 DBREF 4WJQ C 17 97 UNP P63165 SUMO1_HUMAN 17 97 DBREF 4WJQ D 3 19 PDB 4WJQ 4WJQ 3 19 SEQADV 4WJQ GLY A 15 UNP P63165 EXPRESSION TAG SEQADV 4WJQ SER A 16 UNP P63165 EXPRESSION TAG SEQADV 4WJQ ALA A 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQADV 4WJQ GLY C 15 UNP P63165 EXPRESSION TAG SEQADV 4WJQ SER C 16 UNP P63165 EXPRESSION TAG SEQADV 4WJQ ALA C 52 UNP P63165 CYS 52 ENGINEERED MUTATION SEQRES 1 A 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 A 83 GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET SEQRES 3 A 83 THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA GLN SEQRES 4 A 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 A 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 A 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 A 83 GLU GLN THR GLY GLY SEQRES 1 B 17 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE VAL LEU SER SEQRES 2 B 17 ASP SER ASP TYR SEQRES 1 C 83 GLY SER LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL ILE SEQRES 2 C 83 GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS MET SEQRES 3 C 83 THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR ALA GLN SEQRES 4 C 83 ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU PHE SEQRES 5 C 83 GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS GLU SEQRES 6 C 83 LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR GLN SEQRES 7 C 83 GLU GLN THR GLY GLY SEQRES 1 D 17 GLY SER GLY GLU ALA GLU GLU ARG ILE ILE VAL LEU SER SEQRES 2 D 17 ASP SER ASP TYR FORMUL 5 HOH *334(H2 O) HELIX 1 AA1 LEU A 44 GLY A 56 1 13 HELIX 2 AA2 PRO A 58 ASN A 60 5 3 HELIX 3 AA3 THR A 76 GLY A 81 1 6 HELIX 4 AA4 LEU C 44 GLY C 56 1 13 HELIX 5 AA5 PRO C 58 ASN C 60 5 3 HELIX 6 AA6 THR C 76 GLY C 81 1 6 SHEET 1 AA1 6 GLN A 69 ARG A 70 0 SHEET 2 AA1 6 LEU A 62 PHE A 66 -1 N PHE A 66 O GLN A 69 SHEET 3 AA1 6 VAL A 87 GLN A 92 -1 O GLU A 89 N LEU A 65 SHEET 4 AA1 6 ILE A 22 ILE A 27 1 N ILE A 27 O ILE A 88 SHEET 5 AA1 6 GLU A 33 VAL A 38 -1 O ILE A 34 N VAL A 26 SHEET 6 AA1 6 ILE B 11 VAL B 13 1 O ILE B 12 N HIS A 35 SHEET 1 AA2 6 GLN C 69 ARG C 70 0 SHEET 2 AA2 6 LEU C 62 PHE C 66 -1 N PHE C 66 O GLN C 69 SHEET 3 AA2 6 VAL C 87 GLN C 92 -1 O GLU C 89 N LEU C 65 SHEET 4 AA2 6 TYR C 21 ILE C 27 1 N LYS C 25 O ILE C 88 SHEET 5 AA2 6 GLU C 33 LYS C 39 -1 O PHE C 36 N LEU C 24 SHEET 6 AA2 6 ILE D 11 VAL D 13 1 O ILE D 12 N HIS C 35 CISPEP 1 GLY A 96 GLY A 97 0 -7.22 CRYST1 34.637 38.402 73.691 90.00 101.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028871 0.000000 0.005658 0.00000 SCALE2 0.000000 0.026040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013828 0.00000