HEADER LYASE 01-OCT-14 4WJT TITLE STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM B.SUBTILIS COMPLEXED WITH TITLE 2 NAG COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YUIC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: YUIC, BSU32070; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA-2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS LYTIC TRANSGLYCOSYLASE, PEPTIDOGLYCAN REMODELLING, STATIONARY PHASE, KEYWDS 2 MLTA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.X.QUAY,A.R.COLE,A.CRYAR,K.THALASSINOS,M.A.WILLIAMS,S.BHAKTA, AUTHOR 2 N.H.KEEP REVDAT 4 10-JAN-24 4WJT 1 HETSYN REVDAT 3 29-JUL-20 4WJT 1 COMPND REMARK HETNAM SITE REVDAT 2 21-SEP-16 4WJT 1 JRNL REVDAT 1 08-JUL-15 4WJT 0 JRNL AUTH D.H.QUAY,A.R.COLE,A.CRYAR,K.THALASSINOS,M.A.WILLIAMS, JRNL AUTH 2 S.BHAKTA,N.H.KEEP JRNL TITL STRUCTURE OF THE STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM JRNL TITL 2 B.SUBTILIS. JRNL REF BMC STRUCT.BIOL. V. 15 12 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 26163297 JRNL DOI 10.1186/S12900-015-0039-Z REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 85213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.112 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4468 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 347 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.987 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2503 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2414 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3418 ; 2.156 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5587 ; 1.183 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 6.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;32.603 ;25.192 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 427 ;12.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.429 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2768 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 518 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 4.433 ; 1.824 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1199 ; 4.438 ; 1.827 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1501 ; 5.571 ; 2.728 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1502 ; 5.571 ; 2.732 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 5.755 ; 2.344 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1306 ; 5.753 ; 2.345 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1905 ; 6.558 ; 3.314 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3112 ; 7.537 ;17.931 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2914 ; 7.371 ;16.734 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4917 ; 6.608 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 92 ;33.948 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5140 ;16.337 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 72 217 B 72 217 801 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 36.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: ACORN REMARK 200 STARTING MODEL: 2AE0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM NAG, 48% (V/V) POLYPROPYLENE REMARK 280 GLYCOL P400, 0.1M HEPES PH 6, 3% (V/V) DMSO, PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.74000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.99646 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.60667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 72.74000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 41.99646 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.60667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 72.74000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 41.99646 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.60667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.99292 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.21333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 83.99292 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.21333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 83.99292 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.21333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 52 REMARK 465 LEU A 53 REMARK 465 LYS A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 GLN A 57 REMARK 465 GLN A 58 REMARK 465 LYS A 59 REMARK 465 GLN A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 THR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 GLU A 68 REMARK 465 ASP A 69 REMARK 465 LYS A 70 REMARK 465 THR A 71 REMARK 465 GLU A 218 REMARK 465 ARG B 52 REMARK 465 LEU B 53 REMARK 465 LYS B 54 REMARK 465 ALA B 55 REMARK 465 LEU B 56 REMARK 465 GLN B 57 REMARK 465 GLN B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 60 REMARK 465 THR B 61 REMARK 465 GLN B 62 REMARK 465 THR B 63 REMARK 465 THR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 ALA B 67 REMARK 465 GLU B 68 REMARK 465 ASP B 69 REMARK 465 LYS B 70 REMARK 465 THR B 71 REMARK 465 GLU B 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 106 O HOH B 561 1.78 REMARK 500 OG1 THR B 91 OD1 ASP B 162 2.04 REMARK 500 O HOH A 439 O HOH A 452 2.07 REMARK 500 O HOH A 551 O HOH A 559 2.07 REMARK 500 OD1 ASP B 195 O HOH B 571 2.09 REMARK 500 O HOH A 512 O HOH B 579 2.09 REMARK 500 O HOH A 466 O HOH A 470 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 460 O HOH B 472 1554 1.96 REMARK 500 O HOH A 476 O HOH B 484 8554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 75 CD GLU A 75 OE1 0.094 REMARK 500 GLU A 98 CD GLU A 98 OE1 0.108 REMARK 500 ARG A 160 CZ ARG A 160 NH1 -0.080 REMARK 500 GLU B 75 CD GLU B 75 OE1 0.126 REMARK 500 GLU B 82 CG GLU B 82 CD 0.094 REMARK 500 THR B 91 CA THR B 91 CB 0.167 REMARK 500 GLU B 98 CD GLU B 98 OE1 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 98 OE1 - CD - OE2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLU B 98 OE1 - CD - OE2 ANGL. DEV. = 9.8 DEGREES REMARK 500 ASP B 106 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 -168.71 -161.08 REMARK 500 TYR A 144 -56.70 -126.34 REMARK 500 ASP B 121 -168.31 -161.74 REMARK 500 TYR B 144 -56.25 -129.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 4WJT A 52 218 UNP O32108 YUIC_BACSU 52 218 DBREF 4WJT B 52 218 UNP O32108 YUIC_BACSU 52 218 SEQRES 1 A 167 ARG LEU LYS ALA LEU GLN GLN LYS GLN THR GLN THR THR SEQRES 2 A 167 SER ALA ALA GLU ASP LYS THR LYS PRO LEU GLU GLU ALA SEQRES 3 A 167 PHE ASP TRP ASP GLU TYR PRO VAL GLN ARG VAL THR ALA SEQRES 4 A 167 THR GLY TYR THR ALA GLY ALA GLU SER THR GLY LYS ASN SEQRES 5 A 167 PRO GLY ASP PRO LEU TYR GLY LEU THR TYR SER GLY VAL SEQRES 6 A 167 LYS VAL LYS ARG ASP LEU TYR SER THR VAL ALA ALA ASP SEQRES 7 A 167 PRO SER VAL PHE PRO ILE GLY THR ILE LEU PHE ILE PRO SEQRES 8 A 167 ASN TYR GLY LEU GLY VAL VAL ALA ASP THR GLY SER ALA SEQRES 9 A 167 ILE LYS GLY ASN ARG LEU ASP LEU TYR PHE GLU THR VAL SEQRES 10 A 167 LYS ASP VAL TYR ASN GLU TRP GLY LYS LYS THR LEU ASP SEQRES 11 A 167 VAL TYR VAL ILE LYS LYS GLY THR GLY LYS ILE THR GLU SEQRES 12 A 167 ASP GLU LEU GLU LYS LEU ASN GLU THR LYS SER LEU GLN SEQRES 13 A 167 VAL PHE ARG ASN GLN TYR LYS THR VAL LYS GLU SEQRES 1 B 167 ARG LEU LYS ALA LEU GLN GLN LYS GLN THR GLN THR THR SEQRES 2 B 167 SER ALA ALA GLU ASP LYS THR LYS PRO LEU GLU GLU ALA SEQRES 3 B 167 PHE ASP TRP ASP GLU TYR PRO VAL GLN ARG VAL THR ALA SEQRES 4 B 167 THR GLY TYR THR ALA GLY ALA GLU SER THR GLY LYS ASN SEQRES 5 B 167 PRO GLY ASP PRO LEU TYR GLY LEU THR TYR SER GLY VAL SEQRES 6 B 167 LYS VAL LYS ARG ASP LEU TYR SER THR VAL ALA ALA ASP SEQRES 7 B 167 PRO SER VAL PHE PRO ILE GLY THR ILE LEU PHE ILE PRO SEQRES 8 B 167 ASN TYR GLY LEU GLY VAL VAL ALA ASP THR GLY SER ALA SEQRES 9 B 167 ILE LYS GLY ASN ARG LEU ASP LEU TYR PHE GLU THR VAL SEQRES 10 B 167 LYS ASP VAL TYR ASN GLU TRP GLY LYS LYS THR LEU ASP SEQRES 11 B 167 VAL TYR VAL ILE LYS LYS GLY THR GLY LYS ILE THR GLU SEQRES 12 B 167 ASP GLU LEU GLU LYS LEU ASN GLU THR LYS SER LEU GLN SEQRES 13 B 167 VAL PHE ARG ASN GLN TYR LYS THR VAL LYS GLU HET NAG A 301 15 HET DMS A 302 4 HET NAG B 301 30 HET 3P9 B 302 13 HET DMS B 303 4 HET DMS B 304 4 HET DMS B 305 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM DMS DIMETHYL SULFOXIDE HETNAM 3P9 (2S)-2-{[(2S)-2-{[(2R)-2- HETNAM 2 3P9 HYDROXYPROPYL]OXY}PROPYL]OXY}PROPAN-1-OL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN 3P9 POLYPROPYLENEGLYCOL FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 DMS 4(C2 H6 O S) FORMUL 6 3P9 C9 H20 O4 FORMUL 10 HOH *371(H2 O) HELIX 1 AA1 PRO A 73 PHE A 78 1 6 HELIX 2 AA2 ASP A 79 TYR A 83 5 5 HELIX 3 AA3 GLY A 96 GLY A 101 1 6 HELIX 4 AA4 THR A 167 TRP A 175 1 9 HELIX 5 AA5 THR A 193 GLU A 202 1 10 HELIX 6 AA6 THR A 203 SER A 205 5 3 HELIX 7 AA7 LEU A 206 ASN A 211 1 6 HELIX 8 AA8 PRO B 73 PHE B 78 1 6 HELIX 9 AA9 ASP B 79 TYR B 83 5 5 HELIX 10 AB1 GLY B 96 GLY B 101 1 6 HELIX 11 AB2 THR B 167 TRP B 175 1 9 HELIX 12 AB3 THR B 193 GLU B 202 1 10 HELIX 13 AB4 THR B 203 SER B 205 5 3 HELIX 14 AB5 LEU B 206 ASN B 211 1 6 SHEET 1 AA1 7 VAL A 85 TYR A 93 0 SHEET 2 AA1 7 ARG A 160 TYR A 164 1 O LEU A 163 N THR A 91 SHEET 3 AA1 7 TYR A 123 ALA A 128 -1 N ALA A 127 O ASP A 162 SHEET 4 AA1 7 GLY A 145 ASP A 151 1 O VAL A 148 N SER A 124 SHEET 5 AA1 7 ILE A 138 ILE A 141 -1 N LEU A 139 O GLY A 147 SHEET 6 AA1 7 LYS B 178 LYS B 186 -1 O TYR B 183 N PHE A 140 SHEET 7 AA1 7 VAL A 85 TYR A 93 -1 N ALA A 90 O LYS B 178 SHEET 1 AA2 7 LYS A 178 LYS A 186 0 SHEET 2 AA2 7 VAL B 85 TYR B 93 -1 O ALA B 90 N LYS A 178 SHEET 3 AA2 7 ARG B 160 TYR B 164 1 O LEU B 163 N THR B 91 SHEET 4 AA2 7 TYR B 123 ALA B 128 -1 N ALA B 127 O ASP B 162 SHEET 5 AA2 7 GLY B 145 ASP B 151 1 O ALA B 150 N VAL B 126 SHEET 6 AA2 7 ILE B 138 ILE B 141 -1 N LEU B 139 O GLY B 147 SHEET 7 AA2 7 LYS A 178 LYS A 186 -1 N TYR A 183 O PHE B 140 CRYST1 145.480 145.480 37.820 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006874 0.003969 0.000000 0.00000 SCALE2 0.000000 0.007937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026441 0.00000