data_4WKO # _entry.id 4WKO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4WKO pdb_00004wko 10.2210/pdb4wko/pdb WWPDB D_1000203987 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB '4FFS contains the same protein (with a different tag) complexed with butylthio-DADMe-Immucillin-A' 4FFS unspecified PDB '4WKN contains the same protein complexed with methylthio-DADMe-Immucillin-A' 4WKN unspecified PDB . 4WKC unspecified PDB . 4WKP unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4WKO _pdbx_database_status.recvd_initial_deposition_date 2014-10-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cameron, S.A.' 1 'Wang, S.' 2 'Almo, S.C.' 3 'Schramm, V.L.' 4 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? US ? ? primary J.Am.Chem.Soc. JACSAT ? 1520-5126 ? ? 137 ? 14275 14280 'New Antibiotic Candidates against Helicobacter pylori.' 2015 ? 10.1021/jacs.5b06110 26494017 ? ? ? ? ? ? ? ? US ? ? 1 Biochemistry BICHAW 0033 0006-2960 ? ? ? ? 6892 6894 'A picomolar transition state analogue inhibitor of MTAN as a specific antibiotic for Helicobacter pylori.' 2012 ? 10.1021/bi3009664 22891633 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, S.' 1 ? primary 'Cameron, S.A.' 2 ? primary 'Clinch, K.' 3 ? primary 'Evans, G.B.' 4 ? primary 'Wu, Z.' 5 ? primary 'Schramm, V.L.' 6 ? primary 'Tyler, P.C.' 7 ? 1 'Wang, S.' 8 ? 1 'Haapalainen, A.M.' 9 ? 1 'Yan, F.' 10 ? 1 'Du, Q.' 11 ? 1 'Tyler, P.C.' 12 ? 1 'Evans, G.B.' 13 ? 1 'Rinaldo-Matthis, A.' 14 ? 1 'Brown, R.L.' 15 ? 1 'Norris, G.E.' 16 ? 1 'Almo, S.C.' 17 ? 1 'Schramm, V.L.' 18 ? # _cell.length_a 157.256 _cell.length_b 157.256 _cell.length_c 157.256 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4WKO _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4WKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Aminodeoxyfutalosine nucleosidase' 26886.875 1 3.2.2.9 ? ? ? 2 non-polymer syn '(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-hydroxybutyl)sulfanyl]methyl}pyrrolidin-3-ol' 351.467 1 ? ? ? ? 3 water nat water 18.015 222 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Aminofutalosine nucleosidase,5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase,MTAN,6-amino-6-deoxyfutalosine N-ribosylhydrolase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHENLYFQGVQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMI LAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEG VIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKS MVDEL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHENLYFQGVQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMI LAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEG VIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKS MVDEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 GLU n 1 10 ASN n 1 11 LEU n 1 12 TYR n 1 13 PHE n 1 14 GLN n 1 15 GLY n 1 16 VAL n 1 17 GLN n 1 18 LYS n 1 19 ILE n 1 20 GLY n 1 21 ILE n 1 22 LEU n 1 23 GLY n 1 24 ALA n 1 25 MET n 1 26 ARG n 1 27 GLU n 1 28 GLU n 1 29 ILE n 1 30 THR n 1 31 PRO n 1 32 ILE n 1 33 LEU n 1 34 GLU n 1 35 LEU n 1 36 PHE n 1 37 GLY n 1 38 VAL n 1 39 ASP n 1 40 PHE n 1 41 GLU n 1 42 GLU n 1 43 ILE n 1 44 PRO n 1 45 LEU n 1 46 GLY n 1 47 GLY n 1 48 ASN n 1 49 VAL n 1 50 PHE n 1 51 HIS n 1 52 LYS n 1 53 GLY n 1 54 VAL n 1 55 TYR n 1 56 HIS n 1 57 ASN n 1 58 LYS n 1 59 GLU n 1 60 ILE n 1 61 ILE n 1 62 VAL n 1 63 ALA n 1 64 TYR n 1 65 SER n 1 66 LYS n 1 67 ILE n 1 68 GLY n 1 69 LYS n 1 70 VAL n 1 71 HIS n 1 72 SER n 1 73 THR n 1 74 LEU n 1 75 THR n 1 76 THR n 1 77 THR n 1 78 SER n 1 79 MET n 1 80 ILE n 1 81 LEU n 1 82 ALA n 1 83 PHE n 1 84 GLY n 1 85 VAL n 1 86 GLN n 1 87 LYS n 1 88 VAL n 1 89 LEU n 1 90 PHE n 1 91 SER n 1 92 GLY n 1 93 VAL n 1 94 ALA n 1 95 GLY n 1 96 SER n 1 97 LEU n 1 98 VAL n 1 99 LYS n 1 100 ASP n 1 101 LEU n 1 102 LYS n 1 103 ILE n 1 104 ASN n 1 105 ASP n 1 106 LEU n 1 107 LEU n 1 108 VAL n 1 109 ALA n 1 110 THR n 1 111 GLN n 1 112 LEU n 1 113 VAL n 1 114 GLN n 1 115 HIS n 1 116 ASP n 1 117 VAL n 1 118 ASP n 1 119 LEU n 1 120 SER n 1 121 ALA n 1 122 PHE n 1 123 ASP n 1 124 HIS n 1 125 PRO n 1 126 LEU n 1 127 GLY n 1 128 PHE n 1 129 ILE n 1 130 PRO n 1 131 GLU n 1 132 SER n 1 133 ALA n 1 134 ILE n 1 135 PHE n 1 136 ILE n 1 137 GLU n 1 138 THR n 1 139 SER n 1 140 GLY n 1 141 SER n 1 142 LEU n 1 143 ASN n 1 144 ALA n 1 145 LEU n 1 146 ALA n 1 147 LYS n 1 148 LYS n 1 149 ILE n 1 150 ALA n 1 151 ASN n 1 152 GLU n 1 153 GLN n 1 154 HIS n 1 155 ILE n 1 156 ALA n 1 157 LEU n 1 158 LYS n 1 159 GLU n 1 160 GLY n 1 161 VAL n 1 162 ILE n 1 163 ALA n 1 164 SER n 1 165 GLY n 1 166 ASP n 1 167 GLN n 1 168 PHE n 1 169 VAL n 1 170 HIS n 1 171 SER n 1 172 LYS n 1 173 GLU n 1 174 ARG n 1 175 LYS n 1 176 GLU n 1 177 PHE n 1 178 LEU n 1 179 VAL n 1 180 SER n 1 181 GLU n 1 182 PHE n 1 183 LYS n 1 184 ALA n 1 185 SER n 1 186 ALA n 1 187 VAL n 1 188 GLU n 1 189 MET n 1 190 GLU n 1 191 GLY n 1 192 ALA n 1 193 SER n 1 194 VAL n 1 195 ALA n 1 196 PHE n 1 197 VAL n 1 198 CYS n 1 199 GLN n 1 200 LYS n 1 201 PHE n 1 202 GLY n 1 203 VAL n 1 204 PRO n 1 205 CYS n 1 206 CYS n 1 207 VAL n 1 208 LEU n 1 209 ARG n 1 210 SER n 1 211 ILE n 1 212 SER n 1 213 ASP n 1 214 ASN n 1 215 ALA n 1 216 ASP n 1 217 GLU n 1 218 LYS n 1 219 ALA n 1 220 GLY n 1 221 MET n 1 222 SER n 1 223 PHE n 1 224 ASP n 1 225 GLU n 1 226 PHE n 1 227 LEU n 1 228 GLU n 1 229 LYS n 1 230 SER n 1 231 ALA n 1 232 HIS n 1 233 THR n 1 234 SER n 1 235 ALA n 1 236 LYS n 1 237 PHE n 1 238 LEU n 1 239 LYS n 1 240 SER n 1 241 MET n 1 242 VAL n 1 243 ASP n 1 244 GLU n 1 245 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 245 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mtnN, mtn, jhp_0082' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'J99 / ATCC 700824' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 85963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET32a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MQMTN_HELPJ _struct_ref.pdbx_db_accession Q9ZMY2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGS LVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKE FLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4WKO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 17 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ZMY2 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 230 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4WKO MET A 1 ? UNP Q9ZMY2 ? ? 'initiating methionine' -14 1 1 4WKO GLY A 2 ? UNP Q9ZMY2 ? ? 'expression tag' -13 2 1 4WKO HIS A 3 ? UNP Q9ZMY2 ? ? 'expression tag' -12 3 1 4WKO HIS A 4 ? UNP Q9ZMY2 ? ? 'expression tag' -11 4 1 4WKO HIS A 5 ? UNP Q9ZMY2 ? ? 'expression tag' -10 5 1 4WKO HIS A 6 ? UNP Q9ZMY2 ? ? 'expression tag' -9 6 1 4WKO HIS A 7 ? UNP Q9ZMY2 ? ? 'expression tag' -8 7 1 4WKO HIS A 8 ? UNP Q9ZMY2 ? ? 'expression tag' -7 8 1 4WKO GLU A 9 ? UNP Q9ZMY2 ? ? 'expression tag' -6 9 1 4WKO ASN A 10 ? UNP Q9ZMY2 ? ? 'expression tag' -5 10 1 4WKO LEU A 11 ? UNP Q9ZMY2 ? ? 'expression tag' -4 11 1 4WKO TYR A 12 ? UNP Q9ZMY2 ? ? 'expression tag' -3 12 1 4WKO PHE A 13 ? UNP Q9ZMY2 ? ? 'expression tag' -2 13 1 4WKO GLN A 14 ? UNP Q9ZMY2 ? ? 'expression tag' -1 14 1 4WKO GLY A 15 ? UNP Q9ZMY2 ? ? 'expression tag' 0 15 1 4WKO VAL A 16 ? UNP Q9ZMY2 ? ? 'expression tag' 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GMD non-polymer . '(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-hydroxybutyl)sulfanyl]methyl}pyrrolidin-3-ol' hydroxybutylthio-DADMe-Immucillin-A 'C16 H25 N5 O2 S' 351.467 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4WKO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.18 _exptl_crystal.description Cube _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Protein (10 mg/mL); Reservoir (0.2 M di-sodium phosphate and 2.2 M ammonium sulfate); Cryoprotection (20% (v/v) glycerol)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-05 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Double silicon(111) crystal' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.075 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.075 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate 16.3 _reflns.entry_id 4WKO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.900 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 26379 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 43.900 _reflns.pdbx_Rmerge_I_obs 0.113 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 47.200 _reflns.pdbx_netI_over_sigmaI 7.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.978 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.114 _reflns.pdbx_Rpim_I_all 0.017 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 1157099 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.900 1.930 ? 5.86 ? ? ? 1286 ? 100.000 ? ? ? ? 0.876 ? ? ? ? ? ? ? ? 41.900 ? 0.798 ? ? 0.886 0.136 0 1 1 0.966 ? 1.930 1.970 ? ? ? ? ? 1304 ? 100.000 ? ? ? ? 0.699 ? ? ? ? ? ? ? ? 41.900 ? 0.796 ? ? 0.708 0.109 0 2 1 0.974 ? 1.970 2.010 ? ? ? ? ? 1308 ? 100.000 ? ? ? ? 0.569 ? ? ? ? ? ? ? ? 42.300 ? 0.824 ? ? 0.576 0.088 0 3 1 0.982 ? 2.010 2.050 ? ? ? ? ? 1270 ? 100.000 ? ? ? ? 0.456 ? ? ? ? ? ? ? ? 42.500 ? 0.843 ? ? 0.462 0.070 0 4 1 0.988 ? 2.050 2.090 ? ? ? ? ? 1303 ? 100.000 ? ? ? ? 0.434 ? ? ? ? ? ? ? ? 42.700 ? 0.843 ? ? 0.439 0.067 0 5 1 0.988 ? 2.090 2.140 ? ? ? ? ? 1293 ? 100.000 ? ? ? ? 0.375 ? ? ? ? ? ? ? ? 42.700 ? 0.856 ? ? 0.380 0.058 0 6 1 0.994 ? 2.140 2.190 ? ? ? ? ? 1294 ? 100.000 ? ? ? ? 0.313 ? ? ? ? ? ? ? ? 42.900 ? 0.867 ? ? 0.316 0.048 0 7 1 0.995 ? 2.190 2.250 ? ? ? ? ? 1308 ? 100.000 ? ? ? ? 0.282 ? ? ? ? ? ? ? ? 43.300 ? 0.888 ? ? 0.285 0.043 0 8 1 0.996 ? 2.250 2.320 ? ? ? ? ? 1304 ? 100.000 ? ? ? ? 0.250 ? ? ? ? ? ? ? ? 43.000 ? 0.880 ? ? 0.253 0.038 0 9 1 0.997 ? 2.320 2.390 ? ? ? ? ? 1297 ? 100.000 ? ? ? ? 0.231 ? ? ? ? ? ? ? ? 43.300 ? 0.891 ? ? 0.234 0.035 0 10 1 0.997 ? 2.390 2.480 ? ? ? ? ? 1313 ? 100.000 ? ? ? ? 0.202 ? ? ? ? ? ? ? ? 43.500 ? 0.882 ? ? 0.204 0.031 0 11 1 0.998 ? 2.480 2.580 ? ? ? ? ? 1310 ? 100.000 ? ? ? ? 0.177 ? ? ? ? ? ? ? ? 43.800 ? 0.903 ? ? 0.179 0.027 0 12 1 0.999 ? 2.580 2.700 ? ? ? ? ? 1300 ? 100.000 ? ? ? ? 0.146 ? ? ? ? ? ? ? ? 44.200 ? 0.938 ? ? 0.148 0.022 0 13 1 0.999 ? 2.700 2.840 ? ? ? ? ? 1329 ? 100.000 ? ? ? ? 0.129 ? ? ? ? ? ? ? ? 44.600 ? 1.005 ? ? 0.131 0.019 0 14 1 0.999 ? 2.840 3.020 ? ? ? ? ? 1318 ? 100.000 ? ? ? ? 0.116 ? ? ? ? ? ? ? ? 45.800 ? 1.136 ? ? 0.117 0.017 0 15 1 0.999 ? 3.020 3.250 ? ? ? ? ? 1318 ? 100.000 ? ? ? ? 0.091 ? ? ? ? ? ? ? ? 46.600 ? 1.333 ? ? 0.092 0.013 0 16 1 0.999 ? 3.250 3.580 ? ? ? ? ? 1354 ? 100.000 ? ? ? ? 0.067 ? ? ? ? ? ? ? ? 46.400 ? 1.198 ? ? 0.068 0.010 0 17 1 1.000 ? 3.580 4.090 ? ? ? ? ? 1338 ? 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 45.000 ? 1.254 ? ? 0.048 0.007 0 18 1 1.000 ? 4.090 5.160 ? ? ? ? ? 1362 ? 100.000 ? ? ? ? 0.038 ? ? ? ? ? ? ? ? 46.000 ? 1.241 ? ? 0.038 0.006 0 19 1 1.000 ? 5.160 50.000 ? ? ? ? ? 1470 ? 99.900 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 44.400 ? 1.037 ? ? 0.035 0.005 0 20 1 1.000 ? # _refine.aniso_B[1][1] 0.0000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 0.0000 _refine.B_iso_max 51.770 _refine.B_iso_mean 19.9990 _refine.B_iso_min 10.320 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9470 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4WKO _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 25.0000 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 25024 _refine.ls_number_reflns_R_free 1338 _refine.ls_number_reflns_R_work 25024 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.9100 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1598 _refine.ls_R_factor_R_free 0.1905 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1583 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free 0.1661 _refine.ls_wR_factor_R_work 0.1421 _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4FFS _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.1060 _refine.pdbx_overall_ESU_R_Free 0.1050 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.1320 _refine.overall_SU_ML 0.0640 _refine.overall_SU_R_Cruickshank_DPI 0.1055 _refine.overall_SU_R_free 0.1046 _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set 0.8841 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 25.0000 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 222 _refine_hist.number_atoms_total 2002 _refine_hist.pdbx_number_residues_total 230 _refine_hist.pdbx_B_iso_mean_ligand 16.46 _refine_hist.pdbx_B_iso_mean_solvent 30.69 _refine_hist.pdbx_number_atoms_protein 1756 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.019 1828 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 1790 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.256 1.977 2467 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.737 3.000 4139 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 5.481 5.000 233 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 33.626 25.676 74 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 13.083 15.000 327 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.846 15.000 3 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.069 0.200 287 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 2045 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 394 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.921 1.778 926 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.911 1.776 925 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.484 2.661 1158 ? r_mcangle_it ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9490 _refine_ls_shell.number_reflns_all 1889 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 83 _refine_ls_shell.number_reflns_R_work 1806 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1850 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1820 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? # _struct.entry_id 4WKO _struct.title ;Crystal structure of Helicobacter pylori 5'-methylthioadenosine/S-adenosyl homocysteine nucleosidase (MTAN) complexed with hydroxybutylthio-DADMe-Immucillin-A ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4WKO _struct_keywords.text 'hydrolase, hydrolase-hydrolase inhibitor complex' _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 MET A 25 ? GLY A 37 ? MET A 10 GLY A 22 1 ? 13 HELX_P HELX_P2 AA2 GLY A 68 ? GLY A 84 ? GLY A 53 GLY A 69 1 ? 17 HELX_P HELX_P3 AA3 LEU A 119 ? ASP A 123 ? LEU A 104 ASP A 108 5 ? 5 HELX_P HELX_P4 AA4 SER A 139 ? HIS A 154 ? SER A 124 HIS A 139 1 ? 16 HELX_P HELX_P5 AA5 SER A 171 ? LYS A 183 ? SER A 156 LYS A 168 1 ? 13 HELX_P HELX_P6 AA6 GLU A 190 ? PHE A 201 ? GLU A 175 PHE A 186 1 ? 12 HELX_P HELX_P7 AA7 LYS A 218 ? LEU A 245 ? LYS A 203 LEU A 230 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 9 ? AA2 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? anti-parallel AA1 6 7 ? parallel AA1 7 8 ? parallel AA1 8 9 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? parallel AA2 5 6 ? parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU A 41 ? LEU A 45 ? GLU A 26 LEU A 30 AA1 2 ASN A 48 ? TYR A 55 ? ASN A 33 TYR A 40 AA1 3 LYS A 58 ? TYR A 64 ? LYS A 43 TYR A 49 AA1 4 GLN A 17 ? GLY A 23 ? GLN A 2 GLY A 8 AA1 5 LYS A 87 ? SER A 96 ? LYS A 72 SER A 81 AA1 6 ALA A 184 ? GLU A 188 ? ALA A 169 GLU A 173 AA1 7 LEU A 157 ? SER A 164 ? LEU A 142 SER A 149 AA1 8 LEU A 106 ? GLN A 114 ? LEU A 91 GLN A 99 AA1 9 PHE A 135 ? GLU A 137 ? PHE A 120 GLU A 122 AA2 1 GLU A 41 ? LEU A 45 ? GLU A 26 LEU A 30 AA2 2 ASN A 48 ? TYR A 55 ? ASN A 33 TYR A 40 AA2 3 LYS A 58 ? TYR A 64 ? LYS A 43 TYR A 49 AA2 4 GLN A 17 ? GLY A 23 ? GLN A 2 GLY A 8 AA2 5 LYS A 87 ? SER A 96 ? LYS A 72 SER A 81 AA2 6 CYS A 205 ? ASP A 213 ? CYS A 190 ASP A 198 AA2 7 LEU A 106 ? GLN A 114 ? LEU A 91 GLN A 99 AA2 8 PHE A 135 ? GLU A 137 ? PHE A 120 GLU A 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 41 ? N GLU A 26 O LYS A 52 ? O LYS A 37 AA1 2 3 N HIS A 51 ? N HIS A 36 O VAL A 62 ? O VAL A 47 AA1 3 4 O ILE A 61 ? O ILE A 46 N ILE A 21 ? N ILE A 6 AA1 4 5 N LEU A 22 ? N LEU A 7 O SER A 91 ? O SER A 76 AA1 5 6 N GLY A 95 ? N GLY A 80 O VAL A 187 ? O VAL A 172 AA1 6 7 O SER A 185 ? O SER A 170 N VAL A 161 ? N VAL A 146 AA1 7 8 O SER A 164 ? O SER A 149 N VAL A 113 ? N VAL A 98 AA1 8 9 N LEU A 112 ? N LEU A 97 O ILE A 136 ? O ILE A 121 AA2 1 2 N GLU A 41 ? N GLU A 26 O LYS A 52 ? O LYS A 37 AA2 2 3 N HIS A 51 ? N HIS A 36 O VAL A 62 ? O VAL A 47 AA2 3 4 O ILE A 61 ? O ILE A 46 N ILE A 21 ? N ILE A 6 AA2 4 5 N LEU A 22 ? N LEU A 7 O SER A 91 ? O SER A 76 AA2 5 6 N PHE A 90 ? N PHE A 75 O CYS A 206 ? O CYS A 191 AA2 6 7 O ARG A 209 ? O ARG A 194 N LEU A 107 ? N LEU A 92 AA2 7 8 N LEU A 112 ? N LEU A 97 O ILE A 136 ? O ILE A 121 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GMD _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 20 _struct_site.details 'binding site for residue GMD A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 20 ALA A 24 ? ALA A 9 . ? 1_555 ? 2 AC1 20 ILE A 67 ? ILE A 52 . ? 1_555 ? 3 AC1 20 VAL A 93 ? VAL A 78 . ? 1_555 ? 4 AC1 20 ALA A 94 ? ALA A 79 . ? 1_555 ? 5 AC1 20 GLY A 95 ? GLY A 80 . ? 1_555 ? 6 AC1 20 LEU A 119 ? LEU A 104 . ? 13_555 ? 7 AC1 20 HIS A 124 ? HIS A 109 . ? 13_555 ? 8 AC1 20 PRO A 130 ? PRO A 115 . ? 13_555 ? 9 AC1 20 GLN A 167 ? GLN A 152 . ? 1_555 ? 10 AC1 20 PHE A 168 ? PHE A 153 . ? 1_555 ? 11 AC1 20 VAL A 169 ? VAL A 154 . ? 1_555 ? 12 AC1 20 VAL A 187 ? VAL A 172 . ? 1_555 ? 13 AC1 20 GLU A 188 ? GLU A 173 . ? 1_555 ? 14 AC1 20 MET A 189 ? MET A 174 . ? 1_555 ? 15 AC1 20 GLU A 190 ? GLU A 175 . ? 1_555 ? 16 AC1 20 SER A 212 ? SER A 197 . ? 1_555 ? 17 AC1 20 ASP A 213 ? ASP A 198 . ? 1_555 ? 18 AC1 20 ALA A 215 ? ALA A 200 . ? 1_555 ? 19 AC1 20 PHE A 223 ? PHE A 208 . ? 1_555 ? 20 AC1 20 HOH C . ? HOH A 478 . ? 1_555 ? # _atom_sites.entry_id 4WKO _atom_sites.fract_transf_matrix[1][1] 0.006359 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006359 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006359 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -14 ? ? ? A . n A 1 2 GLY 2 -13 ? ? ? A . n A 1 3 HIS 3 -12 ? ? ? A . n A 1 4 HIS 4 -11 ? ? ? A . n A 1 5 HIS 5 -10 ? ? ? A . n A 1 6 HIS 6 -9 ? ? ? A . n A 1 7 HIS 7 -8 ? ? ? A . n A 1 8 HIS 8 -7 ? ? ? A . n A 1 9 GLU 9 -6 ? ? ? A . n A 1 10 ASN 10 -5 ? ? ? A . n A 1 11 LEU 11 -4 ? ? ? A . n A 1 12 TYR 12 -3 ? ? ? A . n A 1 13 PHE 13 -2 ? ? ? A . n A 1 14 GLN 14 -1 ? ? ? A . n A 1 15 GLY 15 0 ? ? ? A . n A 1 16 VAL 16 1 1 VAL VAL A . n A 1 17 GLN 17 2 2 GLN GLN A . n A 1 18 LYS 18 3 3 LYS LYS A . n A 1 19 ILE 19 4 4 ILE ILE A . n A 1 20 GLY 20 5 5 GLY GLY A . n A 1 21 ILE 21 6 6 ILE ILE A . n A 1 22 LEU 22 7 7 LEU LEU A . n A 1 23 GLY 23 8 8 GLY GLY A . n A 1 24 ALA 24 9 9 ALA ALA A . n A 1 25 MET 25 10 10 MET MET A . n A 1 26 ARG 26 11 11 ARG ARG A . n A 1 27 GLU 27 12 12 GLU GLU A . n A 1 28 GLU 28 13 13 GLU GLU A . n A 1 29 ILE 29 14 14 ILE ILE A . n A 1 30 THR 30 15 15 THR THR A . n A 1 31 PRO 31 16 16 PRO PRO A . n A 1 32 ILE 32 17 17 ILE ILE A . n A 1 33 LEU 33 18 18 LEU LEU A . n A 1 34 GLU 34 19 19 GLU GLU A . n A 1 35 LEU 35 20 20 LEU LEU A . n A 1 36 PHE 36 21 21 PHE PHE A . n A 1 37 GLY 37 22 22 GLY GLY A . n A 1 38 VAL 38 23 23 VAL VAL A . n A 1 39 ASP 39 24 24 ASP ASP A . n A 1 40 PHE 40 25 25 PHE PHE A . n A 1 41 GLU 41 26 26 GLU GLU A . n A 1 42 GLU 42 27 27 GLU GLU A . n A 1 43 ILE 43 28 28 ILE ILE A . n A 1 44 PRO 44 29 29 PRO PRO A . n A 1 45 LEU 45 30 30 LEU LEU A . n A 1 46 GLY 46 31 31 GLY GLY A . n A 1 47 GLY 47 32 32 GLY GLY A . n A 1 48 ASN 48 33 33 ASN ASN A . n A 1 49 VAL 49 34 34 VAL VAL A . n A 1 50 PHE 50 35 35 PHE PHE A . n A 1 51 HIS 51 36 36 HIS HIS A . n A 1 52 LYS 52 37 37 LYS LYS A . n A 1 53 GLY 53 38 38 GLY GLY A . n A 1 54 VAL 54 39 39 VAL VAL A . n A 1 55 TYR 55 40 40 TYR TYR A . n A 1 56 HIS 56 41 41 HIS HIS A . n A 1 57 ASN 57 42 42 ASN ASN A . n A 1 58 LYS 58 43 43 LYS LYS A . n A 1 59 GLU 59 44 44 GLU GLU A . n A 1 60 ILE 60 45 45 ILE ILE A . n A 1 61 ILE 61 46 46 ILE ILE A . n A 1 62 VAL 62 47 47 VAL VAL A . n A 1 63 ALA 63 48 48 ALA ALA A . n A 1 64 TYR 64 49 49 TYR TYR A . n A 1 65 SER 65 50 50 SER SER A . n A 1 66 LYS 66 51 51 LYS LYS A . n A 1 67 ILE 67 52 52 ILE ILE A . n A 1 68 GLY 68 53 53 GLY GLY A . n A 1 69 LYS 69 54 54 LYS LYS A . n A 1 70 VAL 70 55 55 VAL VAL A . n A 1 71 HIS 71 56 56 HIS HIS A . n A 1 72 SER 72 57 57 SER SER A . n A 1 73 THR 73 58 58 THR THR A . n A 1 74 LEU 74 59 59 LEU LEU A . n A 1 75 THR 75 60 60 THR THR A . n A 1 76 THR 76 61 61 THR THR A . n A 1 77 THR 77 62 62 THR THR A . n A 1 78 SER 78 63 63 SER SER A . n A 1 79 MET 79 64 64 MET MET A . n A 1 80 ILE 80 65 65 ILE ILE A . n A 1 81 LEU 81 66 66 LEU LEU A . n A 1 82 ALA 82 67 67 ALA ALA A . n A 1 83 PHE 83 68 68 PHE PHE A . n A 1 84 GLY 84 69 69 GLY GLY A . n A 1 85 VAL 85 70 70 VAL VAL A . n A 1 86 GLN 86 71 71 GLN GLN A . n A 1 87 LYS 87 72 72 LYS LYS A . n A 1 88 VAL 88 73 73 VAL VAL A . n A 1 89 LEU 89 74 74 LEU LEU A . n A 1 90 PHE 90 75 75 PHE PHE A . n A 1 91 SER 91 76 76 SER SER A . n A 1 92 GLY 92 77 77 GLY GLY A . n A 1 93 VAL 93 78 78 VAL VAL A . n A 1 94 ALA 94 79 79 ALA ALA A . n A 1 95 GLY 95 80 80 GLY GLY A . n A 1 96 SER 96 81 81 SER SER A . n A 1 97 LEU 97 82 82 LEU LEU A . n A 1 98 VAL 98 83 83 VAL VAL A . n A 1 99 LYS 99 84 84 LYS LYS A . n A 1 100 ASP 100 85 85 ASP ASP A . n A 1 101 LEU 101 86 86 LEU LEU A . n A 1 102 LYS 102 87 87 LYS LYS A . n A 1 103 ILE 103 88 88 ILE ILE A . n A 1 104 ASN 104 89 89 ASN ASN A . n A 1 105 ASP 105 90 90 ASP ASP A . n A 1 106 LEU 106 91 91 LEU LEU A . n A 1 107 LEU 107 92 92 LEU LEU A . n A 1 108 VAL 108 93 93 VAL VAL A . n A 1 109 ALA 109 94 94 ALA ALA A . n A 1 110 THR 110 95 95 THR THR A . n A 1 111 GLN 111 96 96 GLN GLN A . n A 1 112 LEU 112 97 97 LEU LEU A . n A 1 113 VAL 113 98 98 VAL VAL A . n A 1 114 GLN 114 99 99 GLN GLN A . n A 1 115 HIS 115 100 100 HIS HIS A . n A 1 116 ASP 116 101 101 ASP ASP A . n A 1 117 VAL 117 102 102 VAL VAL A . n A 1 118 ASP 118 103 103 ASP ASP A . n A 1 119 LEU 119 104 104 LEU LEU A . n A 1 120 SER 120 105 105 SER SER A . n A 1 121 ALA 121 106 106 ALA ALA A . n A 1 122 PHE 122 107 107 PHE PHE A . n A 1 123 ASP 123 108 108 ASP ASP A . n A 1 124 HIS 124 109 109 HIS HIS A . n A 1 125 PRO 125 110 110 PRO PRO A . n A 1 126 LEU 126 111 111 LEU LEU A . n A 1 127 GLY 127 112 112 GLY GLY A . n A 1 128 PHE 128 113 113 PHE PHE A . n A 1 129 ILE 129 114 114 ILE ILE A . n A 1 130 PRO 130 115 115 PRO PRO A . n A 1 131 GLU 131 116 116 GLU GLU A . n A 1 132 SER 132 117 117 SER SER A . n A 1 133 ALA 133 118 118 ALA ALA A . n A 1 134 ILE 134 119 119 ILE ILE A . n A 1 135 PHE 135 120 120 PHE PHE A . n A 1 136 ILE 136 121 121 ILE ILE A . n A 1 137 GLU 137 122 122 GLU GLU A . n A 1 138 THR 138 123 123 THR THR A . n A 1 139 SER 139 124 124 SER SER A . n A 1 140 GLY 140 125 125 GLY GLY A . n A 1 141 SER 141 126 126 SER SER A . n A 1 142 LEU 142 127 127 LEU LEU A . n A 1 143 ASN 143 128 128 ASN ASN A . n A 1 144 ALA 144 129 129 ALA ALA A . n A 1 145 LEU 145 130 130 LEU LEU A . n A 1 146 ALA 146 131 131 ALA ALA A . n A 1 147 LYS 147 132 132 LYS LYS A . n A 1 148 LYS 148 133 133 LYS LYS A . n A 1 149 ILE 149 134 134 ILE ILE A . n A 1 150 ALA 150 135 135 ALA ALA A . n A 1 151 ASN 151 136 136 ASN ASN A . n A 1 152 GLU 152 137 137 GLU GLU A . n A 1 153 GLN 153 138 138 GLN GLN A . n A 1 154 HIS 154 139 139 HIS HIS A . n A 1 155 ILE 155 140 140 ILE ILE A . n A 1 156 ALA 156 141 141 ALA ALA A . n A 1 157 LEU 157 142 142 LEU LEU A . n A 1 158 LYS 158 143 143 LYS LYS A . n A 1 159 GLU 159 144 144 GLU GLU A . n A 1 160 GLY 160 145 145 GLY GLY A . n A 1 161 VAL 161 146 146 VAL VAL A . n A 1 162 ILE 162 147 147 ILE ILE A . n A 1 163 ALA 163 148 148 ALA ALA A . n A 1 164 SER 164 149 149 SER SER A . n A 1 165 GLY 165 150 150 GLY GLY A . n A 1 166 ASP 166 151 151 ASP ASP A . n A 1 167 GLN 167 152 152 GLN GLN A . n A 1 168 PHE 168 153 153 PHE PHE A . n A 1 169 VAL 169 154 154 VAL VAL A . n A 1 170 HIS 170 155 155 HIS HIS A . n A 1 171 SER 171 156 156 SER SER A . n A 1 172 LYS 172 157 157 LYS LYS A . n A 1 173 GLU 173 158 158 GLU GLU A . n A 1 174 ARG 174 159 159 ARG ARG A . n A 1 175 LYS 175 160 160 LYS LYS A . n A 1 176 GLU 176 161 161 GLU GLU A . n A 1 177 PHE 177 162 162 PHE PHE A . n A 1 178 LEU 178 163 163 LEU LEU A . n A 1 179 VAL 179 164 164 VAL VAL A . n A 1 180 SER 180 165 165 SER SER A . n A 1 181 GLU 181 166 166 GLU GLU A . n A 1 182 PHE 182 167 167 PHE PHE A . n A 1 183 LYS 183 168 168 LYS LYS A . n A 1 184 ALA 184 169 169 ALA ALA A . n A 1 185 SER 185 170 170 SER SER A . n A 1 186 ALA 186 171 171 ALA ALA A . n A 1 187 VAL 187 172 172 VAL VAL A . n A 1 188 GLU 188 173 173 GLU GLU A . n A 1 189 MET 189 174 174 MET MET A . n A 1 190 GLU 190 175 175 GLU GLU A . n A 1 191 GLY 191 176 176 GLY GLY A . n A 1 192 ALA 192 177 177 ALA ALA A . n A 1 193 SER 193 178 178 SER SER A . n A 1 194 VAL 194 179 179 VAL VAL A . n A 1 195 ALA 195 180 180 ALA ALA A . n A 1 196 PHE 196 181 181 PHE PHE A . n A 1 197 VAL 197 182 182 VAL VAL A . n A 1 198 CYS 198 183 183 CYS CYS A . n A 1 199 GLN 199 184 184 GLN GLN A . n A 1 200 LYS 200 185 185 LYS LYS A . n A 1 201 PHE 201 186 186 PHE PHE A . n A 1 202 GLY 202 187 187 GLY GLY A . n A 1 203 VAL 203 188 188 VAL VAL A . n A 1 204 PRO 204 189 189 PRO PRO A . n A 1 205 CYS 205 190 190 CYS CYS A . n A 1 206 CYS 206 191 191 CYS CYS A . n A 1 207 VAL 207 192 192 VAL VAL A . n A 1 208 LEU 208 193 193 LEU LEU A . n A 1 209 ARG 209 194 194 ARG ARG A . n A 1 210 SER 210 195 195 SER SER A . n A 1 211 ILE 211 196 196 ILE ILE A . n A 1 212 SER 212 197 197 SER SER A . n A 1 213 ASP 213 198 198 ASP ASP A . n A 1 214 ASN 214 199 199 ASN ASN A . n A 1 215 ALA 215 200 200 ALA ALA A . n A 1 216 ASP 216 201 201 ASP ASP A . n A 1 217 GLU 217 202 202 GLU GLU A . n A 1 218 LYS 218 203 203 LYS LYS A . n A 1 219 ALA 219 204 204 ALA ALA A . n A 1 220 GLY 220 205 205 GLY GLY A . n A 1 221 MET 221 206 206 MET MET A . n A 1 222 SER 222 207 207 SER SER A . n A 1 223 PHE 223 208 208 PHE PHE A . n A 1 224 ASP 224 209 209 ASP ASP A . n A 1 225 GLU 225 210 210 GLU GLU A . n A 1 226 PHE 226 211 211 PHE PHE A . n A 1 227 LEU 227 212 212 LEU LEU A . n A 1 228 GLU 228 213 213 GLU GLU A . n A 1 229 LYS 229 214 214 LYS LYS A . n A 1 230 SER 230 215 215 SER SER A . n A 1 231 ALA 231 216 216 ALA ALA A . n A 1 232 HIS 232 217 217 HIS HIS A . n A 1 233 THR 233 218 218 THR THR A . n A 1 234 SER 234 219 219 SER SER A . n A 1 235 ALA 235 220 220 ALA ALA A . n A 1 236 LYS 236 221 221 LYS LYS A . n A 1 237 PHE 237 222 222 PHE PHE A . n A 1 238 LEU 238 223 223 LEU LEU A . n A 1 239 LYS 239 224 224 LYS LYS A . n A 1 240 SER 240 225 225 SER SER A . n A 1 241 MET 241 226 226 MET MET A . n A 1 242 VAL 242 227 227 VAL VAL A . n A 1 243 ASP 243 228 228 ASP ASP A . n A 1 244 GLU 244 229 229 GLU GLU A . n A 1 245 LEU 245 230 230 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GMD 1 301 1 GMD BoD A . C 3 HOH 1 401 63 HOH HOH A . C 3 HOH 2 402 107 HOH HOH A . C 3 HOH 3 403 143 HOH HOH A . C 3 HOH 4 404 153 HOH HOH A . C 3 HOH 5 405 142 HOH HOH A . C 3 HOH 6 406 183 HOH HOH A . C 3 HOH 7 407 37 HOH HOH A . C 3 HOH 8 408 174 HOH HOH A . C 3 HOH 9 409 53 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 12 HOH HOH A . C 3 HOH 12 412 43 HOH HOH A . C 3 HOH 13 413 88 HOH HOH A . C 3 HOH 14 414 6 HOH HOH A . C 3 HOH 15 415 138 HOH HOH A . C 3 HOH 16 416 69 HOH HOH A . C 3 HOH 17 417 29 HOH HOH A . C 3 HOH 18 418 84 HOH HOH A . C 3 HOH 19 419 125 HOH HOH A . C 3 HOH 20 420 7 HOH HOH A . C 3 HOH 21 421 49 HOH HOH A . C 3 HOH 22 422 1 HOH HOH A . C 3 HOH 23 423 122 HOH HOH A . C 3 HOH 24 424 62 HOH HOH A . C 3 HOH 25 425 13 HOH HOH A . C 3 HOH 26 426 81 HOH HOH A . C 3 HOH 27 427 35 HOH HOH A . C 3 HOH 28 428 105 HOH HOH A . C 3 HOH 29 429 8 HOH HOH A . C 3 HOH 30 430 67 HOH HOH A . C 3 HOH 31 431 95 HOH HOH A . C 3 HOH 32 432 59 HOH HOH A . C 3 HOH 33 433 3 HOH HOH A . C 3 HOH 34 434 181 HOH HOH A . C 3 HOH 35 435 31 HOH HOH A . C 3 HOH 36 436 39 HOH HOH A . C 3 HOH 37 437 16 HOH HOH A . C 3 HOH 38 438 28 HOH HOH A . C 3 HOH 39 439 154 HOH HOH A . C 3 HOH 40 440 92 HOH HOH A . C 3 HOH 41 441 70 HOH HOH A . C 3 HOH 42 442 96 HOH HOH A . C 3 HOH 43 443 116 HOH HOH A . C 3 HOH 44 444 155 HOH HOH A . C 3 HOH 45 445 151 HOH HOH A . C 3 HOH 46 446 72 HOH HOH A . C 3 HOH 47 447 97 HOH HOH A . C 3 HOH 48 448 27 HOH HOH A . C 3 HOH 49 449 152 HOH HOH A . C 3 HOH 50 450 144 HOH HOH A . C 3 HOH 51 451 170 HOH HOH A . C 3 HOH 52 452 21 HOH HOH A . C 3 HOH 53 453 196 HOH HOH A . C 3 HOH 54 454 195 HOH HOH A . C 3 HOH 55 455 179 HOH HOH A . C 3 HOH 56 456 124 HOH HOH A . C 3 HOH 57 457 150 HOH HOH A . C 3 HOH 58 458 186 HOH HOH A . C 3 HOH 59 459 80 HOH HOH A . C 3 HOH 60 460 136 HOH HOH A . C 3 HOH 61 461 102 HOH HOH A . C 3 HOH 62 462 164 HOH HOH A . C 3 HOH 63 463 148 HOH HOH A . C 3 HOH 64 464 156 HOH HOH A . C 3 HOH 65 465 58 HOH HOH A . C 3 HOH 66 466 177 HOH HOH A . C 3 HOH 67 467 64 HOH HOH A . C 3 HOH 68 468 83 HOH HOH A . C 3 HOH 69 469 157 HOH HOH A . C 3 HOH 70 470 115 HOH HOH A . C 3 HOH 71 471 171 HOH HOH A . C 3 HOH 72 472 206 HOH HOH A . C 3 HOH 73 473 75 HOH HOH A . C 3 HOH 74 474 207 HOH HOH A . C 3 HOH 75 475 213 HOH HOH A . C 3 HOH 76 476 178 HOH HOH A . C 3 HOH 77 477 134 HOH HOH A . C 3 HOH 78 478 2 HOH HOH A . C 3 HOH 79 479 4 HOH HOH A . C 3 HOH 80 480 5 HOH HOH A . C 3 HOH 81 481 9 HOH HOH A . C 3 HOH 82 482 11 HOH HOH A . C 3 HOH 83 483 14 HOH HOH A . C 3 HOH 84 484 15 HOH HOH A . C 3 HOH 85 485 17 HOH HOH A . C 3 HOH 86 486 18 HOH HOH A . C 3 HOH 87 487 19 HOH HOH A . C 3 HOH 88 488 20 HOH HOH A . C 3 HOH 89 489 22 HOH HOH A . C 3 HOH 90 490 23 HOH HOH A . C 3 HOH 91 491 24 HOH HOH A . C 3 HOH 92 492 25 HOH HOH A . C 3 HOH 93 493 26 HOH HOH A . C 3 HOH 94 494 30 HOH HOH A . C 3 HOH 95 495 32 HOH HOH A . C 3 HOH 96 496 33 HOH HOH A . C 3 HOH 97 497 34 HOH HOH A . C 3 HOH 98 498 36 HOH HOH A . C 3 HOH 99 499 38 HOH HOH A . C 3 HOH 100 500 40 HOH HOH A . C 3 HOH 101 501 41 HOH HOH A . C 3 HOH 102 502 42 HOH HOH A . C 3 HOH 103 503 44 HOH HOH A . C 3 HOH 104 504 45 HOH HOH A . C 3 HOH 105 505 46 HOH HOH A . C 3 HOH 106 506 47 HOH HOH A . C 3 HOH 107 507 48 HOH HOH A . C 3 HOH 108 508 50 HOH HOH A . C 3 HOH 109 509 51 HOH HOH A . C 3 HOH 110 510 52 HOH HOH A . C 3 HOH 111 511 54 HOH HOH A . C 3 HOH 112 512 55 HOH HOH A . C 3 HOH 113 513 56 HOH HOH A . C 3 HOH 114 514 57 HOH HOH A . C 3 HOH 115 515 60 HOH HOH A . C 3 HOH 116 516 61 HOH HOH A . C 3 HOH 117 517 65 HOH HOH A . C 3 HOH 118 518 66 HOH HOH A . C 3 HOH 119 519 68 HOH HOH A . C 3 HOH 120 520 71 HOH HOH A . C 3 HOH 121 521 73 HOH HOH A . C 3 HOH 122 522 74 HOH HOH A . C 3 HOH 123 523 76 HOH HOH A . C 3 HOH 124 524 77 HOH HOH A . C 3 HOH 125 525 78 HOH HOH A . C 3 HOH 126 526 79 HOH HOH A . C 3 HOH 127 527 82 HOH HOH A . C 3 HOH 128 528 85 HOH HOH A . C 3 HOH 129 529 86 HOH HOH A . C 3 HOH 130 530 87 HOH HOH A . C 3 HOH 131 531 89 HOH HOH A . C 3 HOH 132 532 90 HOH HOH A . C 3 HOH 133 533 91 HOH HOH A . C 3 HOH 134 534 93 HOH HOH A . C 3 HOH 135 535 94 HOH HOH A . C 3 HOH 136 536 98 HOH HOH A . C 3 HOH 137 537 99 HOH HOH A . C 3 HOH 138 538 100 HOH HOH A . C 3 HOH 139 539 101 HOH HOH A . C 3 HOH 140 540 103 HOH HOH A . C 3 HOH 141 541 104 HOH HOH A . C 3 HOH 142 542 106 HOH HOH A . C 3 HOH 143 543 108 HOH HOH A . C 3 HOH 144 544 109 HOH HOH A . C 3 HOH 145 545 110 HOH HOH A . C 3 HOH 146 546 111 HOH HOH A . C 3 HOH 147 547 112 HOH HOH A . C 3 HOH 148 548 113 HOH HOH A . C 3 HOH 149 549 114 HOH HOH A . C 3 HOH 150 550 117 HOH HOH A . C 3 HOH 151 551 118 HOH HOH A . C 3 HOH 152 552 119 HOH HOH A . C 3 HOH 153 553 120 HOH HOH A . C 3 HOH 154 554 121 HOH HOH A . C 3 HOH 155 555 123 HOH HOH A . C 3 HOH 156 556 126 HOH HOH A . C 3 HOH 157 557 127 HOH HOH A . C 3 HOH 158 558 128 HOH HOH A . C 3 HOH 159 559 129 HOH HOH A . C 3 HOH 160 560 130 HOH HOH A . C 3 HOH 161 561 131 HOH HOH A . C 3 HOH 162 562 132 HOH HOH A . C 3 HOH 163 563 133 HOH HOH A . C 3 HOH 164 564 135 HOH HOH A . C 3 HOH 165 565 137 HOH HOH A . C 3 HOH 166 566 139 HOH HOH A . C 3 HOH 167 567 140 HOH HOH A . C 3 HOH 168 568 141 HOH HOH A . C 3 HOH 169 569 145 HOH HOH A . C 3 HOH 170 570 146 HOH HOH A . C 3 HOH 171 571 147 HOH HOH A . C 3 HOH 172 572 149 HOH HOH A . C 3 HOH 173 573 158 HOH HOH A . C 3 HOH 174 574 159 HOH HOH A . C 3 HOH 175 575 160 HOH HOH A . C 3 HOH 176 576 161 HOH HOH A . C 3 HOH 177 577 162 HOH HOH A . C 3 HOH 178 578 163 HOH HOH A . C 3 HOH 179 579 165 HOH HOH A . C 3 HOH 180 580 166 HOH HOH A . C 3 HOH 181 581 167 HOH HOH A . C 3 HOH 182 582 168 HOH HOH A . C 3 HOH 183 583 169 HOH HOH A . C 3 HOH 184 584 172 HOH HOH A . C 3 HOH 185 585 173 HOH HOH A . C 3 HOH 186 586 175 HOH HOH A . C 3 HOH 187 587 176 HOH HOH A . C 3 HOH 188 588 180 HOH HOH A . C 3 HOH 189 589 182 HOH HOH A . C 3 HOH 190 590 184 HOH HOH A . C 3 HOH 191 591 185 HOH HOH A . C 3 HOH 192 592 187 HOH HOH A . C 3 HOH 193 593 188 HOH HOH A . C 3 HOH 194 594 189 HOH HOH A . C 3 HOH 195 595 190 HOH HOH A . C 3 HOH 196 596 191 HOH HOH A . C 3 HOH 197 597 192 HOH HOH A . C 3 HOH 198 598 193 HOH HOH A . C 3 HOH 199 599 194 HOH HOH A . C 3 HOH 200 600 197 HOH HOH A . C 3 HOH 201 601 198 HOH HOH A . C 3 HOH 202 602 199 HOH HOH A . C 3 HOH 203 603 200 HOH HOH A . C 3 HOH 204 604 201 HOH HOH A . C 3 HOH 205 605 202 HOH HOH A . C 3 HOH 206 606 203 HOH HOH A . C 3 HOH 207 607 204 HOH HOH A . C 3 HOH 208 608 205 HOH HOH A . C 3 HOH 209 609 208 HOH HOH A . C 3 HOH 210 610 209 HOH HOH A . C 3 HOH 211 611 210 HOH HOH A . C 3 HOH 212 612 211 HOH HOH A . C 3 HOH 213 613 212 HOH HOH A . C 3 HOH 214 614 214 HOH HOH A . C 3 HOH 215 615 215 HOH HOH A . C 3 HOH 216 616 216 HOH HOH A . C 3 HOH 217 617 217 HOH HOH A . C 3 HOH 218 618 218 HOH HOH A . C 3 HOH 219 619 219 HOH HOH A . C 3 HOH 220 620 220 HOH HOH A . C 3 HOH 221 621 221 HOH HOH A . C 3 HOH 222 622 222 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3500 ? 1 MORE -31 ? 1 'SSA (A^2)' 16960 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 13_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 422 ? C HOH . 2 1 A HOH 469 ? C HOH . 3 1 A HOH 471 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-11-25 2 'Structure model' 1 1 2015-12-02 3 'Structure model' 1 2 2017-09-20 4 'Structure model' 2 0 2018-06-06 5 'Structure model' 2 1 2019-12-25 6 'Structure model' 2 2 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Non-polymer description' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Author supporting evidence' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Database references' 13 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_audit_support 2 3 'Structure model' pdbx_struct_oper_list 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' entity 6 4 'Structure model' pdbx_entity_nonpoly 7 4 'Structure model' pdbx_nonpoly_scheme 8 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 9 4 'Structure model' struct_site 10 5 'Structure model' pdbx_audit_support 11 6 'Structure model' chem_comp_atom 12 6 'Structure model' chem_comp_bond 13 6 'Structure model' database_2 14 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 4 'Structure model' '_atom_site.auth_comp_id' 4 4 'Structure model' '_atom_site.label_comp_id' 5 4 'Structure model' '_chem_comp.formula' 6 4 'Structure model' '_chem_comp.formula_weight' 7 4 'Structure model' '_chem_comp.id' 8 4 'Structure model' '_chem_comp.name' 9 4 'Structure model' '_chem_comp.pdbx_synonyms' 10 4 'Structure model' '_entity.formula_weight' 11 4 'Structure model' '_entity.pdbx_description' 12 4 'Structure model' '_pdbx_entity_nonpoly.comp_id' 13 4 'Structure model' '_pdbx_entity_nonpoly.name' 14 4 'Structure model' '_pdbx_nonpoly_scheme.mon_id' 15 4 'Structure model' '_pdbx_nonpoly_scheme.pdb_mon_id' 16 4 'Structure model' '_struct_site.details' 17 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 5 'Structure model' '_pdbx_audit_support.funding_organization' 19 6 'Structure model' '_database_2.pdbx_DOI' 20 6 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 51 ? ? 84.41 160.15 2 1 ASN A 89 ? ? 83.62 -16.57 3 1 SER A 117 ? ? -137.06 -149.73 4 1 HIS A 155 ? ? -148.91 50.48 5 1 GLU A 175 ? ? -142.87 -27.14 6 1 ASP A 201 ? ? -118.45 -167.84 7 1 ASP A 201 ? ? -118.45 -167.64 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 566 ? 6.05 . 2 1 O ? A HOH 614 ? 6.65 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 84 ? CE ? A LYS 99 CE 2 1 Y 1 A LYS 84 ? NZ ? A LYS 99 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -14 ? A MET 1 2 1 Y 1 A GLY -13 ? A GLY 2 3 1 Y 1 A HIS -12 ? A HIS 3 4 1 Y 1 A HIS -11 ? A HIS 4 5 1 Y 1 A HIS -10 ? A HIS 5 6 1 Y 1 A HIS -9 ? A HIS 6 7 1 Y 1 A HIS -8 ? A HIS 7 8 1 Y 1 A HIS -7 ? A HIS 8 9 1 Y 1 A GLU -6 ? A GLU 9 10 1 Y 1 A ASN -5 ? A ASN 10 11 1 Y 1 A LEU -4 ? A LEU 11 12 1 Y 1 A TYR -3 ? A TYR 12 13 1 Y 1 A PHE -2 ? A PHE 13 14 1 Y 1 A GLN -1 ? A GLN 14 15 1 Y 1 A GLY 0 ? A GLY 15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GMD C C N N 137 GMD OXT O N N 138 GMD CA C N N 139 GMD CB C N N 140 GMD CG C N N 141 GMD "S5'" S N N 142 GMD "C5'" C N N 143 GMD "C4'" C N S 144 GMD "C1'" C N N 145 GMD "C3'" C N R 146 GMD "O3'" O N N 147 GMD "C2'" C N N 148 GMD "N1'" N N N 149 GMD C10 C N N 150 GMD C9 C Y N 151 GMD C8 C Y N 152 GMD N7 N Y N 153 GMD C5 C Y N 154 GMD C4 C Y N 155 GMD N3 N Y N 156 GMD C2 C Y N 157 GMD N1 N Y N 158 GMD C6 C Y N 159 GMD N6 N N N 160 GMD H1 H N N 161 GMD H2 H N N 162 GMD H3 H N N 163 GMD H4 H N N 164 GMD H5 H N N 165 GMD H6 H N N 166 GMD H7 H N N 167 GMD H8 H N N 168 GMD H9 H N N 169 GMD H10 H N N 170 GMD H11 H N N 171 GMD H12 H N N 172 GMD H13 H N N 173 GMD H14 H N N 174 GMD H15 H N N 175 GMD H16 H N N 176 GMD H17 H N N 177 GMD H18 H N N 178 GMD H20 H N N 179 GMD H21 H N N 180 GMD H22 H N N 181 GMD H23 H N N 182 GMD H24 H N N 183 GMD H25 H N N 184 GMD H26 H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TYR N N N N 370 TYR CA C N S 371 TYR C C N N 372 TYR O O N N 373 TYR CB C N N 374 TYR CG C Y N 375 TYR CD1 C Y N 376 TYR CD2 C Y N 377 TYR CE1 C Y N 378 TYR CE2 C Y N 379 TYR CZ C Y N 380 TYR OH O N N 381 TYR OXT O N N 382 TYR H H N N 383 TYR H2 H N N 384 TYR HA H N N 385 TYR HB2 H N N 386 TYR HB3 H N N 387 TYR HD1 H N N 388 TYR HD2 H N N 389 TYR HE1 H N N 390 TYR HE2 H N N 391 TYR HH H N N 392 TYR HXT H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GMD C2 N1 doub Y N 129 GMD C2 N3 sing Y N 130 GMD N1 C6 sing Y N 131 GMD N3 C4 doub Y N 132 GMD C6 N6 sing N N 133 GMD C6 C5 doub Y N 134 GMD C4 C5 sing Y N 135 GMD C4 C9 sing Y N 136 GMD "C2'" "N1'" sing N N 137 GMD "C2'" "C3'" sing N N 138 GMD C5 N7 sing Y N 139 GMD C10 C9 sing N N 140 GMD C10 "N1'" sing N N 141 GMD C9 C8 doub Y N 142 GMD "N1'" "C1'" sing N N 143 GMD "C3'" "O3'" sing N N 144 GMD "C3'" "C4'" sing N N 145 GMD N7 C8 sing Y N 146 GMD "C1'" "C4'" sing N N 147 GMD "C4'" "C5'" sing N N 148 GMD "C5'" "S5'" sing N N 149 GMD "S5'" CG sing N N 150 GMD CG CB sing N N 151 GMD CB CA sing N N 152 GMD CA C sing N N 153 GMD OXT C sing N N 154 GMD C H1 sing N N 155 GMD C H2 sing N N 156 GMD OXT H3 sing N N 157 GMD CA H4 sing N N 158 GMD CA H5 sing N N 159 GMD CB H6 sing N N 160 GMD CB H7 sing N N 161 GMD CG H8 sing N N 162 GMD CG H9 sing N N 163 GMD "C5'" H10 sing N N 164 GMD "C5'" H11 sing N N 165 GMD "C4'" H12 sing N N 166 GMD "C1'" H13 sing N N 167 GMD "C1'" H14 sing N N 168 GMD "C3'" H15 sing N N 169 GMD "O3'" H16 sing N N 170 GMD "C2'" H17 sing N N 171 GMD "C2'" H18 sing N N 172 GMD C10 H20 sing N N 173 GMD C10 H21 sing N N 174 GMD C8 H22 sing N N 175 GMD N7 H23 sing N N 176 GMD C2 H24 sing N N 177 GMD N6 H25 sing N N 178 GMD N6 H26 sing N N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 'R01 GM041916' _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-hydroxybutyl)sulfanyl]methyl}pyrrolidin-3-ol' GMD 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4FFS _pdbx_initial_refinement_model.details ? #