HEADER HYDROLASE/HYDROLASE INHIBITOR 03-OCT-14 4WKS TITLE N-ALKYLBORONIC ACID INHIBITORS REVEAL DETERMINANTS OF LIGAND TITLE 2 SPECIFICITY IN THE QUORUM-QUENCHING AND SIDEROPHORE BIOSYNTHETIC TITLE 3 ENZYME PVDQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: UNP RESIDUES 217-762; COMPND 5 SYNONYM: ACYL-HSL ACYLASE PVDQ; COMPND 6 EC: 3.5.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ; COMPND 10 CHAIN: A; COMPND 11 FRAGMENT: UNP RESIDUES 28-192; COMPND 12 SYNONYM: ACYL-HSL ACYLASE PVDQ; COMPND 13 EC: 3.5.1.97; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 5 GENE: PVDQ, QSC112, PA2385; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 10 ORGANISM_TAXID: 208964; SOURCE 11 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 12 GENE: PVDQ, QSC112, PA2385; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PVDQ, N-ALKYLBORONIC ACID, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,D.K.CLEVENGER,W.FAST,D.LIU REVDAT 2 27-SEP-23 4WKS 1 SOURCE KEYWDS JRNL REMARK REVDAT 1 12-NOV-14 4WKS 0 JRNL AUTH K.D.CLEVENGER,R.WU,D.LIU,W.FAST JRNL TITL N-ALKYLBORONIC ACID INHIBITORS REVEAL DETERMINANTS OF LIGAND JRNL TITL 2 SPECIFICITY IN THE QUORUM-QUENCHING AND SIDEROPHORE JRNL TITL 3 BIOSYNTHETIC ENZYME PVDQ. JRNL REF BIOCHEMISTRY V. 53 6679 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 25290020 JRNL DOI 10.1021/BI501086S REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1678) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 119501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6011 - 5.0602 0.94 3819 186 0.1495 0.1886 REMARK 3 2 5.0602 - 4.0174 0.97 3780 197 0.1264 0.1497 REMARK 3 3 4.0174 - 3.5098 0.98 3805 179 0.1360 0.1678 REMARK 3 4 3.5098 - 3.1891 0.98 3801 211 0.1452 0.1758 REMARK 3 5 3.1891 - 2.9605 0.99 3756 209 0.1493 0.1967 REMARK 3 6 2.9605 - 2.7860 0.99 3793 209 0.1530 0.1793 REMARK 3 7 2.7860 - 2.6465 0.99 3772 206 0.1526 0.1878 REMARK 3 8 2.6465 - 2.5313 1.00 3804 214 0.1524 0.1817 REMARK 3 9 2.5313 - 2.4339 1.00 3805 219 0.1531 0.1837 REMARK 3 10 2.4339 - 2.3499 1.00 3783 205 0.1463 0.1651 REMARK 3 11 2.3499 - 2.2764 1.00 3859 157 0.1445 0.1875 REMARK 3 12 2.2764 - 2.2114 1.00 3766 205 0.1424 0.1742 REMARK 3 13 2.2114 - 2.1532 1.00 3758 226 0.1522 0.1800 REMARK 3 14 2.1532 - 2.1006 1.00 3801 192 0.1557 0.1943 REMARK 3 15 2.1006 - 2.0529 1.00 3799 174 0.1577 0.1842 REMARK 3 16 2.0529 - 2.0092 1.00 3789 207 0.1591 0.2004 REMARK 3 17 2.0092 - 1.9690 1.00 3802 188 0.1614 0.1683 REMARK 3 18 1.9690 - 1.9318 1.00 3760 235 0.1621 0.2249 REMARK 3 19 1.9318 - 1.8973 1.00 3766 193 0.1764 0.1943 REMARK 3 20 1.8973 - 1.8652 1.00 3785 215 0.1800 0.2487 REMARK 3 21 1.8652 - 1.8351 1.00 3810 181 0.1952 0.2255 REMARK 3 22 1.8351 - 1.8069 1.00 3761 208 0.2011 0.2397 REMARK 3 23 1.8069 - 1.7803 1.00 3738 188 0.2092 0.2391 REMARK 3 24 1.7803 - 1.7552 1.00 3792 185 0.2241 0.2602 REMARK 3 25 1.7552 - 1.7315 1.00 3789 193 0.2289 0.2720 REMARK 3 26 1.7315 - 1.7090 1.00 3765 207 0.2260 0.2440 REMARK 3 27 1.7090 - 1.6876 1.00 3783 201 0.2428 0.2596 REMARK 3 28 1.6876 - 1.6673 1.00 3780 184 0.2595 0.2992 REMARK 3 29 1.6673 - 1.6479 1.00 3722 222 0.2692 0.2841 REMARK 3 30 1.6479 - 1.6290 0.99 3770 192 0.2818 0.3135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 5738 REMARK 3 ANGLE : 1.707 7819 REMARK 3 CHIRALITY : 0.108 836 REMARK 3 PLANARITY : 0.010 1049 REMARK 3 DIHEDRAL : 14.338 2146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 218 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3103 32.9626 6.9336 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.1323 REMARK 3 T33: 0.1463 T12: -0.0222 REMARK 3 T13: 0.0067 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.8105 L22: 0.4630 REMARK 3 L33: 0.7025 L12: -0.2871 REMARK 3 L13: 0.2832 L23: 0.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.0815 S13: -0.0480 REMARK 3 S21: -0.0063 S22: 0.0031 S23: 0.1012 REMARK 3 S31: 0.0998 S32: -0.1193 S33: -0.0070 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 529 THROUGH 764 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0867 17.5983 -6.0098 REMARK 3 T TENSOR REMARK 3 T11: 0.2951 T22: 0.1629 REMARK 3 T33: 0.1959 T12: 0.0432 REMARK 3 T13: -0.0043 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.1968 L22: 1.5467 REMARK 3 L33: 2.0013 L12: 0.4739 REMARK 3 L13: 0.8011 L23: 0.6187 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: 0.1866 S13: -0.1059 REMARK 3 S21: -0.2956 S22: 0.1094 S23: 0.1114 REMARK 3 S31: 0.3031 S32: 0.2304 S33: -0.0775 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6711 33.0530 22.5919 REMARK 3 T TENSOR REMARK 3 T11: 0.1593 T22: 0.2261 REMARK 3 T33: 0.1410 T12: 0.0444 REMARK 3 T13: -0.0228 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.2502 L22: 4.1274 REMARK 3 L33: 6.6318 L12: -2.5976 REMARK 3 L13: -2.2831 L23: 3.7419 REMARK 3 S TENSOR REMARK 3 S11: -0.2027 S12: -0.2264 S13: 0.0592 REMARK 3 S21: 0.2914 S22: 0.2190 S23: -0.1575 REMARK 3 S31: 0.3001 S32: 0.4386 S33: -0.0361 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6634 46.1571 4.1609 REMARK 3 T TENSOR REMARK 3 T11: 0.0939 T22: 0.0997 REMARK 3 T33: 0.1285 T12: -0.0309 REMARK 3 T13: 0.0025 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.9937 L22: 1.5162 REMARK 3 L33: 3.7539 L12: -1.0677 REMARK 3 L13: 1.7927 L23: -1.7469 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.0934 S13: 0.1059 REMARK 3 S21: -0.0817 S22: -0.0484 S23: -0.0863 REMARK 3 S31: -0.0121 S32: 0.1677 S33: 0.0424 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1878 51.3447 15.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.1888 REMARK 3 T33: 0.2280 T12: 0.0419 REMARK 3 T13: -0.0037 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 1.5193 L22: 7.9529 REMARK 3 L33: 3.5387 L12: 0.7504 REMARK 3 L13: -0.4114 L23: -5.2982 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: -0.1991 S13: 0.0871 REMARK 3 S21: 0.5213 S22: 0.1493 S23: 0.3111 REMARK 3 S31: -0.8164 S32: -0.4220 S33: -0.1056 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2581 46.6196 13.5963 REMARK 3 T TENSOR REMARK 3 T11: 0.1277 T22: 0.1676 REMARK 3 T33: 0.1624 T12: -0.0118 REMARK 3 T13: -0.0279 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 3.9898 L22: 0.9084 REMARK 3 L33: 3.0302 L12: 0.5000 REMARK 3 L13: -2.5747 L23: -0.4822 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: -0.1399 S13: 0.2467 REMARK 3 S21: 0.0521 S22: 0.1348 S23: -0.0818 REMARK 3 S31: -0.0673 S32: 0.1251 S33: -0.0829 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6987 46.6597 -0.0604 REMARK 3 T TENSOR REMARK 3 T11: 0.0849 T22: 0.0905 REMARK 3 T33: 0.1276 T12: 0.0135 REMARK 3 T13: 0.0331 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.5938 L22: 1.7486 REMARK 3 L33: 5.4230 L12: -0.4462 REMARK 3 L13: 2.6013 L23: -0.4747 REMARK 3 S TENSOR REMARK 3 S11: 0.0381 S12: 0.0858 S13: -0.0192 REMARK 3 S21: -0.0846 S22: 0.0117 S23: 0.0827 REMARK 3 S31: 0.0409 S32: -0.0378 S33: -0.0910 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203933. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119528 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4M1J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES (50 MM) AT PH 7.5; RBCL (80 MM); REMARK 280 PEG-4000 10% (W/V), EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.93100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.73550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.93100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.73550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.22500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.93100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.73550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.22500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.93100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.73550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 561 CG CD OE1 OE2 REMARK 470 LYS C 562 CG CD CE NZ REMARK 470 ASP C 648 CB CG OD1 OD2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN C 376 O HOH C 1393 1.81 REMARK 500 O HOH C 1395 O HOH C 1412 1.82 REMARK 500 O HOH C 1357 O HOH C 1366 1.84 REMARK 500 O HOH A 404 O HOH A 409 1.88 REMARK 500 O HOH A 399 O HOH A 407 1.88 REMARK 500 OE1 GLU C 370 O HOH C 1294 1.92 REMARK 500 O HOH C 1421 O HOH C 1430 1.93 REMARK 500 O HOH C 918 O HOH C 1435 1.98 REMARK 500 O HOH C 1374 O HOH C 1389 1.98 REMARK 500 O HOH C 1277 O HOH C 1278 2.00 REMARK 500 NE2 GLN C 341 O HOH C 1199 2.01 REMARK 500 O HOH A 411 O HOH A 416 2.01 REMARK 500 O HOH A 383 O HOH A 410 2.02 REMARK 500 OE2 GLU A 71 O HOH A 414 2.03 REMARK 500 OD1 ASP C 750 O HOH C 901 2.03 REMARK 500 O HOH A 390 O HOH A 413 2.05 REMARK 500 O HOH C 1226 O HOH C 1231 2.05 REMARK 500 O HOH C 979 O HOH C 996 2.07 REMARK 500 O HOH C 982 O HOH C 1283 2.07 REMARK 500 O HOH C 1457 O HOH C 1459 2.08 REMARK 500 O HOH C 1391 O HOH C 1455 2.08 REMARK 500 O HOH C 960 O HOH C 1415 2.08 REMARK 500 O HOH C 984 O HOH C 1103 2.10 REMARK 500 N GLY A 30 O HOH A 397 2.10 REMARK 500 OE2 GLU A 71 O HOH A 414 2.10 REMARK 500 O HOH C 1262 O HOH C 1266 2.12 REMARK 500 O HOH C 1091 O HOH C 1393 2.12 REMARK 500 O HOH C 1364 O HOH C 1408 2.12 REMARK 500 O HOH C 1451 O HOH C 1454 2.13 REMARK 500 O HOH C 1403 O HOH C 1416 2.14 REMARK 500 O HOH C 936 O HOH C 979 2.14 REMARK 500 O HOH C 1257 O HOH C 1416 2.14 REMARK 500 O HOH C 932 O HOH C 981 2.14 REMARK 500 O HOH C 1264 O HOH A 344 2.14 REMARK 500 O HOH C 1257 O HOH C 1325 2.14 REMARK 500 O HOH C 1216 O HOH C 1256 2.16 REMARK 500 O HOH C 1417 O HOH C 1428 2.16 REMARK 500 O HOH C 1314 O HOH A 364 2.17 REMARK 500 O HOH A 345 O HOH A 385 2.18 REMARK 500 O HOH C 1338 O HOH C 1458 2.18 REMARK 500 O HOH A 318 O HOH A 346 2.18 REMARK 500 O HOH C 968 O HOH C 1381 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 966 O HOH C 970 6554 1.77 REMARK 500 O HOH A 256 O HOH A 261 6555 2.04 REMARK 500 O HOH A 203 O HOH A 247 6554 2.08 REMARK 500 O HOH C 901 O HOH A 205 6555 2.09 REMARK 500 O HOH A 255 O HOH A 257 6555 2.16 REMARK 500 O HOH C 971 O HOH A 204 6555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 258 -4.52 -145.71 REMARK 500 PRO C 270 42.49 -88.40 REMARK 500 ASP C 303 106.93 -169.85 REMARK 500 LYS C 353 -56.42 -141.01 REMARK 500 ASN C 357 -154.67 -115.98 REMARK 500 TRP C 402 26.16 -156.27 REMARK 500 ASN C 418 60.07 -102.42 REMARK 500 ASP C 479 -74.92 -100.48 REMARK 500 SER C 696 -95.90 -143.52 REMARK 500 SER C 717 159.80 79.91 REMARK 500 ASN A 65 30.37 -146.92 REMARK 500 ASN A 107 42.14 -105.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C1327 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH C1391 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH C1418 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH C1452 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C1455 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH A 400 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH A 402 DISTANCE = 6.78 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QD C 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WKT RELATED DB: PDB REMARK 900 RELATED ID: 4WKU RELATED DB: PDB REMARK 900 RELATED ID: 4WKV RELATED DB: PDB DBREF 4WKS C 217 762 UNP Q9I194 PVDQ_PSEAE 217 762 DBREF 4WKS A 28 192 UNP Q9I194 PVDQ_PSEAE 28 192 SEQADV 4WKS ALA C 763 UNP Q9I194 EXPRESSION TAG SEQADV 4WKS ALA C 764 UNP Q9I194 EXPRESSION TAG SEQRES 1 C 548 SER ASN ALA ILE ALA VAL GLY SER GLU ARG SER ALA ASP SEQRES 2 C 548 GLY LYS GLY MET LEU LEU ALA ASN PRO HIS PHE PRO TRP SEQRES 3 C 548 ASN GLY ALA MET ARG PHE TYR GLN MET HIS LEU THR ILE SEQRES 4 C 548 PRO GLY ARG LEU ASP VAL MET GLY ALA SER LEU PRO GLY SEQRES 5 C 548 LEU PRO VAL VAL ASN ILE GLY PHE SER ARG HIS LEU ALA SEQRES 6 C 548 TRP THR HIS THR VAL ASP THR SER SER HIS PHE THR LEU SEQRES 7 C 548 TYR ARG LEU ALA LEU ASP PRO LYS ASP PRO ARG ARG TYR SEQRES 8 C 548 LEU VAL ASP GLY ARG SER LEU PRO LEU GLU GLU LYS SER SEQRES 9 C 548 VAL ALA ILE GLU VAL ARG GLY ALA ASP GLY LYS LEU SER SEQRES 10 C 548 ARG VAL GLU HIS LYS VAL TYR GLN SER ILE TYR GLY PRO SEQRES 11 C 548 LEU VAL VAL TRP PRO GLY LYS LEU ASP TRP ASN ARG SER SEQRES 12 C 548 GLU ALA TYR ALA LEU ARG ASP ALA ASN LEU GLU ASN THR SEQRES 13 C 548 ARG VAL LEU GLN GLN TRP TYR SER ILE ASN GLN ALA SER SEQRES 14 C 548 ASP VAL ALA ASP LEU ARG ARG ARG VAL GLU ALA LEU GLN SEQRES 15 C 548 GLY ILE PRO TRP VAL ASN THR LEU ALA ALA ASP GLU GLN SEQRES 16 C 548 GLY ASN ALA LEU TYR MET ASN GLN SER VAL VAL PRO TYR SEQRES 17 C 548 LEU LYS PRO GLU LEU ILE PRO ALA CYS ALA ILE PRO GLN SEQRES 18 C 548 LEU VAL ALA GLU GLY LEU PRO ALA LEU GLN GLY GLN ASP SEQRES 19 C 548 SER ARG CYS ALA TRP SER ARG ASP PRO ALA ALA ALA GLN SEQRES 20 C 548 ALA GLY ILE THR PRO ALA ALA GLN LEU PRO VAL LEU LEU SEQRES 21 C 548 ARG ARG ASP PHE VAL GLN ASN SER ASN ASP SER ALA TRP SEQRES 22 C 548 LEU THR ASN PRO ALA SER PRO LEU GLN GLY PHE SER PRO SEQRES 23 C 548 LEU VAL SER GLN GLU LYS PRO ILE GLY PRO ARG ALA ARG SEQRES 24 C 548 TYR ALA LEU SER ARG LEU GLN GLY LYS GLN PRO LEU GLU SEQRES 25 C 548 ALA LYS THR LEU GLU GLU MET VAL THR ALA ASN HIS VAL SEQRES 26 C 548 PHE SER ALA ASP GLN VAL LEU PRO ASP LEU LEU ARG LEU SEQRES 27 C 548 CYS ARG ASP ASN GLN GLY GLU LYS SER LEU ALA ARG ALA SEQRES 28 C 548 CYS ALA ALA LEU ALA GLN TRP ASP ARG GLY ALA ASN LEU SEQRES 29 C 548 ASP SER GLY SER GLY PHE VAL TYR PHE GLN ARG PHE MET SEQRES 30 C 548 GLN ARG PHE ALA GLU LEU ASP GLY ALA TRP LYS GLU PRO SEQRES 31 C 548 PHE ASP ALA GLN ARG PRO LEU ASP THR PRO GLN GLY ILE SEQRES 32 C 548 ALA LEU ASP ARG PRO GLN VAL ALA THR GLN VAL ARG GLN SEQRES 33 C 548 ALA LEU ALA ASP ALA ALA ALA GLU VAL GLU LYS SER GLY SEQRES 34 C 548 ILE PRO ASP GLY ALA ARG TRP GLY ASP LEU GLN VAL SER SEQRES 35 C 548 THR ARG GLY GLN GLU ARG ILE ALA ILE PRO GLY GLY ASP SEQRES 36 C 548 GLY HIS PHE GLY VAL TYR ASN ALA ILE GLN SER VAL ARG SEQRES 37 C 548 LYS GLY ASP HIS LEU GLU VAL VAL GLY GLY THR SER TYR SEQRES 38 C 548 ILE GLN LEU VAL THR PHE PRO GLU GLU GLY PRO LYS ALA SEQRES 39 C 548 ARG GLY LEU LEU ALA PHE SER GLN SER SER ASP PRO ARG SEQRES 40 C 548 SER PRO HIS TYR ARG ASP GLN THR GLU LEU PHE SER ARG SEQRES 41 C 548 GLN GLN TRP GLN THR LEU PRO PHE SER ASP ARG GLN ILE SEQRES 42 C 548 ASP ALA ASP PRO GLN LEU GLN ARG LEU SER ILE ARG GLU SEQRES 43 C 548 ALA ALA SEQRES 1 A 165 PRO THR GLY LEU ALA ALA ASP ILE ARG TRP THR ALA TYR SEQRES 2 A 165 GLY VAL PRO HIS ILE ARG ALA LYS ASP GLU ARG GLY LEU SEQRES 3 A 165 GLY TYR GLY ILE GLY TYR ALA TYR ALA ARG ASP ASN ALA SEQRES 4 A 165 CYS LEU LEU ALA GLU GLU ILE VAL THR ALA ARG GLY GLU SEQRES 5 A 165 ARG ALA ARG TYR PHE GLY SER GLU GLY LYS SER SER ALA SEQRES 6 A 165 GLU LEU ASP ASN LEU PRO SER ASP ILE PHE TYR ALA TRP SEQRES 7 A 165 LEU ASN GLN PRO GLU ALA LEU GLN ALA PHE TRP GLN ALA SEQRES 8 A 165 GLN THR PRO ALA VAL ARG GLN LEU LEU GLU GLY TYR ALA SEQRES 9 A 165 ALA GLY PHE ASN ARG PHE LEU ARG GLU ALA ASP GLY LYS SEQRES 10 A 165 THR THR SER CYS LEU GLY GLN PRO TRP LEU ARG ALA ILE SEQRES 11 A 165 ALA THR ASP ASP LEU LEU ARG LEU THR ARG ARG LEU LEU SEQRES 12 A 165 VAL GLU GLY GLY VAL GLY GLN PHE ALA ASP ALA LEU VAL SEQRES 13 A 165 ALA ALA ALA PRO PRO GLY ALA GLU LYS HET 3QD C 801 4 HETNAM 3QD ETHYLBORONIC ACID FORMUL 3 3QD C2 H7 B O2 FORMUL 4 HOH *781(H2 O) HELIX 1 AA1 ASN C 243 ARG C 247 5 5 HELIX 2 AA2 ASN C 368 ASN C 371 5 4 HELIX 3 AA3 ARG C 373 GLN C 383 1 11 HELIX 4 AA4 ASP C 386 GLN C 398 1 13 HELIX 5 AA5 GLU C 428 ALA C 434 1 7 HELIX 6 AA6 ILE C 435 GLU C 441 1 7 HELIX 7 AA7 ASP C 450 ALA C 454 5 5 HELIX 8 AA8 PRO C 468 LEU C 472 5 5 HELIX 9 AA9 GLY C 511 GLN C 522 1 12 HELIX 10 AB1 GLU C 528 ALA C 538 1 11 HELIX 11 AB2 PHE C 542 ASP C 557 1 16 HELIX 12 AB3 GLU C 561 SER C 563 5 3 HELIX 13 AB4 LEU C 564 TRP C 574 1 11 HELIX 14 AB5 SER C 584 ALA C 597 1 14 HELIX 15 AB6 ARG C 623 SER C 644 1 22 HELIX 16 AB7 ARG C 651 LEU C 655 1 5 HELIX 17 AB8 ASP C 671 GLY C 675 5 5 HELIX 18 AB9 ARG C 728 ARG C 736 1 9 HELIX 19 AC1 SER C 745 ALA C 751 1 7 HELIX 20 AC2 ALA A 39 GLY A 41 5 3 HELIX 21 AC3 ASP A 49 ARG A 77 1 29 HELIX 22 AC4 GLU A 79 GLY A 85 1 7 HELIX 23 AC5 ASP A 95 ASN A 107 1 13 HELIX 24 AC6 GLN A 108 ALA A 118 1 11 HELIX 25 AC7 THR A 120 ALA A 141 1 22 HELIX 26 AC8 ALA A 158 VAL A 171 1 14 HELIX 27 AC9 GLU A 172 GLN A 177 5 6 HELIX 28 AD1 PHE A 178 ALA A 185 1 8 SHEET 1 AA1 6 PHE C 480 ASN C 483 0 SHEET 2 AA1 6 ASN C 218 VAL C 222 -1 N ALA C 221 O VAL C 481 SHEET 3 AA1 6 MET C 233 ASN C 237 -1 O LEU C 235 N ILE C 220 SHEET 4 AA1 6 TYR C 697 THR C 702 -1 O GLN C 699 N ALA C 236 SHEET 5 AA1 6 LYS C 709 LEU C 714 -1 O LEU C 713 N ILE C 698 SHEET 6 AA1 6 GLN C 740 THR C 741 -1 O GLN C 740 N GLY C 712 SHEET 1 AA2 4 HIS C 239 PRO C 241 0 SHEET 2 AA2 4 HIS C 688 THR C 695 -1 O GLY C 694 N PHE C 240 SHEET 3 AA2 4 GLN C 656 ARG C 660 1 N VAL C 657 O LEU C 689 SHEET 4 AA2 4 GLU C 663 ALA C 666 -1 O GLU C 663 N ARG C 660 SHEET 1 AA3 3 HIS C 239 PRO C 241 0 SHEET 2 AA3 3 HIS C 688 THR C 695 -1 O GLY C 694 N PHE C 240 SHEET 3 AA3 3 ILE C 680 LYS C 685 -1 N GLN C 681 O VAL C 692 SHEET 1 AA410 VAL C 474 ARG C 477 0 SHEET 2 AA410 ALA C 414 MET C 417 -1 N ALA C 414 O ARG C 477 SHEET 3 AA410 VAL C 403 ASP C 409 -1 N ALA C 407 O LEU C 415 SHEET 4 AA410 LEU C 280 VAL C 286 -1 N THR C 285 O ASN C 404 SHEET 5 AA410 ILE C 274 PHE C 276 -1 N GLY C 275 O TRP C 282 SHEET 6 AA410 LEU C 259 SER C 265 -1 N MET C 262 O PHE C 276 SHEET 7 AA410 TYR C 249 ILE C 255 -1 N LEU C 253 O VAL C 261 SHEET 8 AA410 VAL A 42 ARG A 46 1 O ILE A 45 N HIS C 252 SHEET 9 AA410 ALA A 32 THR A 38 -1 N ARG A 36 O HIS A 44 SHEET 10 AA410 GLN C 756 ARG C 761 -1 N LEU C 758 O ILE A 35 SHEET 1 AA5 7 ARG C 312 PRO C 315 0 SHEET 2 AA5 7 ASP C 303 VAL C 309 -1 N TYR C 307 O LEU C 314 SHEET 3 AA5 7 PHE C 292 ASP C 300 -1 N ALA C 298 O LEU C 308 SHEET 4 AA5 7 GLU C 360 ASP C 366 -1 O ALA C 361 N LEU C 297 SHEET 5 AA5 7 GLY C 345 VAL C 348 -1 N VAL C 348 O TYR C 362 SHEET 6 AA5 7 LEU C 332 SER C 342 -1 N SER C 342 O GLY C 345 SHEET 7 AA5 7 GLU C 317 ARG C 326 -1 N ILE C 323 O VAL C 335 SHEET 1 AA6 4 ARG C 312 PRO C 315 0 SHEET 2 AA6 4 ASP C 303 VAL C 309 -1 N TYR C 307 O LEU C 314 SHEET 3 AA6 4 PHE C 292 ASP C 300 -1 N ALA C 298 O LEU C 308 SHEET 4 AA6 4 ALA C 445 GLN C 447 1 O LEU C 446 N ARG C 296 SHEET 1 AA7 2 TRP C 603 GLU C 605 0 SHEET 2 AA7 2 GLN C 617 ILE C 619 -1 O GLN C 617 N GLU C 605 SSBOND 1 CYS C 433 CYS C 453 1555 1555 2.17 SSBOND 2 CYS C 555 CYS C 568 1555 1555 2.07 SSBOND 3 CYS A 67 CYS A 148 1555 1555 2.13 LINK OG SER C 217 B1 3QD C 801 1555 1555 1.42 CISPEP 1 THR C 615 PRO C 616 0 -0.66 SITE 1 AC1 5 SER C 217 HIS C 239 PHE C 240 ASN C 485 SITE 2 AC1 5 HOH C1395 CRYST1 121.862 167.471 94.450 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010588 0.00000