HEADER HYDROLASE 06-OCT-14 4WL7 TITLE ROOM-TEMPERATURE CRYSTAL STRUCTURE OF LYSOZYME DETERMINED BY SERIAL TITLE 2 SYNCHROTRON CRYSTALLOGRAPHY USING A MICRO FOCUSED BEAM (CONVENTIONAL TITLE 3 RESOLUTION CUT-OFF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS SERIAL CRYSTALLOGRAPHY, CRYSTFEL, NANOPEAKCELL, NANO FOCUSED BEAM, KEYWDS 2 HYDROLASE, RASTER SCANNING SILICONE NITRIDE EXPDTA X-RAY DIFFRACTION AUTHOR N.COQUELLE,A.S.BREWSTER,U.KAPP,A.SHILOVA,B.WEINHAUSEN,M.BURGHAMMER, AUTHOR 2 J.P.COLLETIER REVDAT 6 23-OCT-24 4WL7 1 REMARK REVDAT 5 10-JAN-24 4WL7 1 REMARK REVDAT 4 20-JUL-16 4WL7 1 JRNL REVDAT 3 20-MAY-15 4WL7 1 JRNL REVDAT 2 13-MAY-15 4WL7 1 JRNL REVDAT 1 06-MAY-15 4WL7 0 JRNL AUTH N.COQUELLE,A.S.BREWSTER,U.KAPP,A.SHILOVA,B.WEINHAUSEN, JRNL AUTH 2 M.BURGHAMMER,J.P.COLLETIER JRNL TITL RASTER-SCANNING SERIAL PROTEIN CRYSTALLOGRAPHY USING MICRO- JRNL TITL 2 AND NANO-FOCUSED SYNCHROTRON BEAMS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1184 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25945583 JRNL DOI 10.1107/S1399004715004514 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9778 - 2.8124 1.00 2980 158 0.1952 0.2431 REMARK 3 2 2.8124 - 2.2323 1.00 2810 148 0.2549 0.2922 REMARK 3 3 2.2323 - 1.9502 1.00 2800 147 0.2418 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1077 REMARK 3 ANGLE : 0.872 1457 REMARK 3 CHIRALITY : 0.038 150 REMARK 3 PLANARITY : 0.003 193 REMARK 3 DIHEDRAL : 12.406 389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6208 -6.4262 28.5370 REMARK 3 T TENSOR REMARK 3 T11: 0.3535 T22: 0.3427 REMARK 3 T33: 0.3170 T12: 0.0641 REMARK 3 T13: 0.0431 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.1975 L22: 0.1459 REMARK 3 L33: 0.7243 L12: -0.0858 REMARK 3 L13: -0.1782 L23: 0.3315 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.1185 S13: -0.2854 REMARK 3 S21: 0.5698 S22: -0.3473 S23: 0.2177 REMARK 3 S31: 0.0863 S32: -0.7511 S33: -0.0455 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4064 -6.7447 21.0059 REMARK 3 T TENSOR REMARK 3 T11: 0.3067 T22: 0.2964 REMARK 3 T33: 0.3231 T12: 0.0316 REMARK 3 T13: 0.0288 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.5976 L22: 0.1183 REMARK 3 L33: 0.5338 L12: -0.2904 REMARK 3 L13: -0.2006 L23: 0.1158 REMARK 3 S TENSOR REMARK 3 S11: -0.1436 S12: 0.1077 S13: -0.1798 REMARK 3 S21: -0.0368 S22: -0.1251 S23: 0.0488 REMARK 3 S31: 0.2470 S32: -0.0764 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8748 9.9782 19.8423 REMARK 3 T TENSOR REMARK 3 T11: 0.3473 T22: 0.3550 REMARK 3 T33: 0.3873 T12: 0.0782 REMARK 3 T13: 0.0525 T23: 0.0422 REMARK 3 L TENSOR REMARK 3 L11: 0.0186 L22: 0.1809 REMARK 3 L33: 0.0158 L12: 0.0391 REMARK 3 L13: -0.0284 L23: -0.0929 REMARK 3 S TENSOR REMARK 3 S11: -0.1655 S12: 0.2754 S13: 0.1051 REMARK 3 S21: 0.0408 S22: 0.2730 S23: -0.1914 REMARK 3 S31: -0.1865 S32: -0.2868 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4567 6.8422 12.2163 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.3363 REMARK 3 T33: 0.3010 T12: 0.0672 REMARK 3 T13: 0.0336 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.0663 L22: 0.4792 REMARK 3 L33: 0.3159 L12: 0.1698 REMARK 3 L13: 0.0067 L23: 0.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.2030 S12: -0.0093 S13: 0.2294 REMARK 3 S21: -0.5153 S22: -0.0748 S23: 0.0063 REMARK 3 S31: -0.3638 S32: 0.0925 S33: 0.0053 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9702 4.5993 5.0824 REMARK 3 T TENSOR REMARK 3 T11: 0.5264 T22: 0.5362 REMARK 3 T33: 0.3963 T12: 0.1156 REMARK 3 T13: -0.0121 T23: 0.0929 REMARK 3 L TENSOR REMARK 3 L11: 0.0627 L22: 0.3240 REMARK 3 L33: 0.1090 L12: -0.1144 REMARK 3 L13: -0.0570 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: 0.9590 S13: 0.1124 REMARK 3 S21: -0.5431 S22: -0.5697 S23: 0.7979 REMARK 3 S31: -0.1637 S32: 0.5185 S33: -0.0176 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7964 -2.3075 14.6546 REMARK 3 T TENSOR REMARK 3 T11: 0.3912 T22: 0.3836 REMARK 3 T33: 0.3681 T12: -0.0172 REMARK 3 T13: 0.0084 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.3092 L22: 0.2262 REMARK 3 L33: 0.1509 L12: -0.2666 REMARK 3 L13: 0.2351 L23: -0.2415 REMARK 3 S TENSOR REMARK 3 S11: -0.0369 S12: 0.4055 S13: 0.4017 REMARK 3 S21: -0.3233 S22: 0.0609 S23: -0.0278 REMARK 3 S31: 0.1152 S32: -0.1174 S33: -0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2294 3.0238 20.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.3587 T22: 0.3092 REMARK 3 T33: 0.3800 T12: 0.0000 REMARK 3 T13: -0.0277 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.3552 L22: 0.2844 REMARK 3 L33: 0.4495 L12: -0.4059 REMARK 3 L13: 0.7491 L23: -0.1565 REMARK 3 S TENSOR REMARK 3 S11: 0.2446 S12: 0.7364 S13: 0.5959 REMARK 3 S21: -0.4114 S22: -0.1256 S23: 0.4449 REMARK 3 S31: -0.1861 S32: 0.2217 S33: 0.0211 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1893 -8.8836 30.5181 REMARK 3 T TENSOR REMARK 3 T11: 0.3896 T22: 0.4334 REMARK 3 T33: 0.4817 T12: 0.1271 REMARK 3 T13: 0.0091 T23: 0.0705 REMARK 3 L TENSOR REMARK 3 L11: 0.5893 L22: 0.8147 REMARK 3 L33: 0.5488 L12: 0.3996 REMARK 3 L13: -0.3620 L23: -0.1839 REMARK 3 S TENSOR REMARK 3 S11: -0.3869 S12: 0.0078 S13: -0.8286 REMARK 3 S21: 0.0479 S22: 0.1027 S23: -0.7327 REMARK 3 S31: 0.4552 S32: -0.0733 S33: -0.0356 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9054 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 55.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 159.3 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 70.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LJN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM ACETATE PH 4.5, 16% PEG REMARK 280 4K, 3.5M NACL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.17000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.97000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.75500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.97000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.58500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.75500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.58500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.17000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 322 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ARG A -16 REMARK 465 SER A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 ILE A -12 REMARK 465 LEU A -11 REMARK 465 VAL A -10 REMARK 465 LEU A -9 REMARK 465 CYS A -8 REMARK 465 PHE A -7 REMARK 465 LEU A -6 REMARK 465 PRO A -5 REMARK 465 LEU A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 GLY A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 44 OD1 REMARK 480 TRP A 62 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH A 375 1.91 REMARK 500 O HOH A 303 O HOH A 333 2.00 REMARK 500 O HOH A 315 O HOH A 376 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 342 O HOH A 342 8556 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 20.16 -141.58 REMARK 500 ASN A 77 57.85 31.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 4WL7 A -17 129 UNP P00698 LYSC_CHICK 1 147 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU HET CL A 201 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- FORMUL 3 HOH *78(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 VAL A 99 1 12 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ILE A 124 5 6 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.05 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.03 CRYST1 77.940 77.940 38.340 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012830 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026082 0.00000