HEADER TRANSFERASE 07-OCT-14 4WLJ TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF HUMAN KYNURENINE TITLE 2 AMINOTRANSFERASE-I IN COMPLEX WITH AMINOOXYACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE--OXOGLUTARATE TRANSAMINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 87-392; COMPND 5 SYNONYM: CYSTEINE-S-CONJUGATE BETA-LYASE,GLUTAMINE TRANSAMINASE K, COMPND 6 GTK,GLUTAMINE--PHENYLPYRUVATE TRANSAMINASE,KYNURENINE COMPND 7 AMINOTRANSFERASE I,KATI,KYNURENINE--OXOGLUTARATE TRANSAMINASE I; COMPND 8 EC: 2.6.1.7,4.4.1.13,2.6.1.64; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CCBL1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBLUEBAC4.5 KEYWDS LYSINE MODIFICATION, TRANSAMINASE, AMINOTRANSFERASE, ALPHA BETA KEYWDS 2 PROTEIN LIGAND, AOAA, DEOXY AMINOPYRIDOXAL PHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.A.NADVI,N.K.SALAM,J.PARK,F.N.AKLADIOS,V.KAPOOR,C.A.COLLYER, AUTHOR 2 M.D.GORRELL,W.B.CHURCH REVDAT 4 27-SEP-23 4WLJ 1 REMARK REVDAT 3 31-MAY-17 4WLJ 1 JRNL REVDAT 2 17-DEC-14 4WLJ 1 JRNL REVDAT 1 03-DEC-14 4WLJ 0 JRNL AUTH N.A.NADVI,N.K.SALAM,J.PARK,F.N.AKLADIOS,V.KAPOOR, JRNL AUTH 2 C.A.COLLYER,M.D.GORRELL,W.B.CHURCH JRNL TITL HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN KYNURENINE JRNL TITL 2 AMINOTRANSFERASE-I BOUND TO PLP COFACTOR, AND IN COMPLEX JRNL TITL 3 WITH AMINOOXYACETATE. JRNL REF PROTEIN SCI. V. 26 727 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28097769 JRNL DOI 10.1002/PRO.3119 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 107385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9442 - 4.7765 1.00 3901 213 0.1732 0.1826 REMARK 3 2 4.7765 - 3.7947 0.88 3399 189 0.1508 0.1517 REMARK 3 3 3.7947 - 3.3160 0.75 2881 150 0.1837 0.2280 REMARK 3 4 3.3160 - 3.0132 1.00 3838 193 0.1922 0.2183 REMARK 3 5 3.0132 - 2.7975 1.00 3838 199 0.1908 0.2173 REMARK 3 6 2.7975 - 2.6327 0.75 2842 145 0.1862 0.2160 REMARK 3 7 2.6327 - 2.5010 1.00 3847 181 0.1805 0.1986 REMARK 3 8 2.5010 - 2.3922 1.00 3789 208 0.1752 0.2008 REMARK 3 9 2.3922 - 2.3001 0.99 3793 195 0.1799 0.2109 REMARK 3 10 2.3001 - 2.2208 0.56 2121 137 0.2899 0.3294 REMARK 3 11 2.2208 - 2.1514 0.94 3572 177 0.2406 0.2298 REMARK 3 12 2.1514 - 2.0899 1.00 3852 191 0.1978 0.2320 REMARK 3 13 2.0899 - 2.0349 1.00 2496 142 0.1973 0.2357 REMARK 3 14 2.0349 - 1.9853 1.00 3796 214 0.1903 0.2314 REMARK 3 15 1.9853 - 1.9402 0.98 2033 101 0.2382 0.3320 REMARK 3 16 1.9402 - 1.8989 0.73 2780 137 0.3828 0.4339 REMARK 3 17 1.8989 - 1.8609 0.68 2600 125 0.3306 0.3995 REMARK 3 18 1.8609 - 1.8258 0.99 3816 193 0.2030 0.2584 REMARK 3 19 1.8258 - 1.7932 1.00 3827 191 0.1853 0.2590 REMARK 3 20 1.7932 - 1.7628 0.99 3795 192 0.1937 0.2400 REMARK 3 21 1.7628 - 1.7344 0.99 3746 215 0.1883 0.2747 REMARK 3 22 1.7344 - 1.7077 0.61 2349 114 0.1865 0.2380 REMARK 3 23 1.7077 - 1.6826 0.99 3762 198 0.1885 0.2491 REMARK 3 24 1.6826 - 1.6589 0.98 3710 183 0.1935 0.2206 REMARK 3 25 1.6589 - 1.6365 0.98 3781 187 0.1954 0.2508 REMARK 3 26 1.6365 - 1.6152 0.98 3716 192 0.2098 0.2235 REMARK 3 27 1.6152 - 1.5950 0.97 3745 207 0.2156 0.2724 REMARK 3 28 1.5950 - 1.5758 0.96 3585 194 0.2275 0.2798 REMARK 3 29 1.5758 - 1.5575 0.91 3495 179 0.2312 0.2608 REMARK 3 30 1.5575 - 1.5400 0.89 3332 206 0.2476 0.2965 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6872 REMARK 3 ANGLE : 1.361 9330 REMARK 3 CHIRALITY : 0.056 990 REMARK 3 PLANARITY : 0.008 1204 REMARK 3 DIHEDRAL : 13.754 2524 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE HIGH RESOLUTION AT WHICH THIS REMARK 3 STRUCTURE WAS DETERMINED ALLOWED THE IDENTIFICATION OF RESIDUES REMARK 3 WITH ALTERNATE CONFORMATIONS. FOUR REGIONS IN EACH CHAIN WERE REMARK 3 OBSERVED TO BE HIGHLY DISORDERED WITH GENERALLY POORER ELECTION REMARK 3 DENSITY: RESIDUES 15-29, 147-154, 355-359 AND THE C-TERMINUS REMARK 3 (419-422). RESIDUES 147-154 WERE REMOVED FROM THE FINAL MODEL REMARK 3 DUE TO THE ABSENCE OF UNAMBIGUOUS ELECTION DENSITY. FOR RESIDUES REMARK 3 IN THE OTHER DISORDERED REGIONS ELECTRON DENSITY COULD BE REMARK 3 OBSERVED FOR MOST OF THE MAIN CHAIN ATOMS, BUT WAS LESS REMARK 3 UNAMBIGUOUS FOR THE SIDE-CHAINS. THESE RESIDUES ARE IN THE FINAL REMARK 3 MODEL, WITH BOTH THE OCCUPANCY AND TEMPERATURE FACTORS SET TO REMARK 3 ZERO FOR MOST OF THESE RESIDUES, DUE TO THE EXISTENCE OF A LEVEL REMARK 3 OF EVIDENCE FOR THEIR LOCATION. REMARK 4 REMARK 4 4WLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000203925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : SILICON DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 75.262 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.66700 REMARK 200 R SYM FOR SHELL (I) : 0.66700 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.1 REMARK 200 STARTING MODEL: 4WLH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MM AOAA, 29% PEG 4000, 0.2 M SODIUM REMARK 280 ACETATE, 0.1 M TRIS, PH 7.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.37000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.37000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 148 REMARK 465 ILE A 149 REMARK 465 GLN A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 GLU A 153 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 148 REMARK 465 ILE B 149 REMARK 465 GLN B 150 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 GLU B 153 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TYR A 15 REMARK 475 ASN A 16 REMARK 475 PRO A 17 REMARK 475 TRP A 18 REMARK 475 VAL A 19 REMARK 475 GLU A 20 REMARK 475 PHE A 21 REMARK 475 VAL A 22 REMARK 475 LYS A 23 REMARK 475 LEU A 24 REMARK 475 ALA A 25 REMARK 475 SER A 26 REMARK 475 GLU A 27 REMARK 475 HIS A 28 REMARK 475 ASP A 29 REMARK 475 VAL A 358 REMARK 475 ASP A 359 REMARK 475 LYS A 419 REMARK 475 VAL A 420 REMARK 475 GLU A 421 REMARK 475 LEU A 422 REMARK 475 ARG B 8 REMARK 475 TYR B 15 REMARK 475 ASN B 16 REMARK 475 PRO B 17 REMARK 475 TRP B 18 REMARK 475 VAL B 19 REMARK 475 PHE B 21 REMARK 475 VAL B 22 REMARK 475 LYS B 23 REMARK 475 LEU B 24 REMARK 475 ALA B 25 REMARK 475 SER B 26 REMARK 475 GLU B 27 REMARK 475 HIS B 28 REMARK 475 ASP B 29 REMARK 475 GLN B 35 REMARK 475 LEU B 91 REMARK 475 ARG B 138 REMARK 475 VAL B 358 REMARK 475 ASP B 359 REMARK 475 VAL B 420 REMARK 475 GLU B 421 REMARK 475 LEU B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 338 O HOH A 782 1.52 REMARK 500 OE2 GLU A 413 HH21 ARG A 416 1.54 REMARK 500 O HIS A 206 O HOH A 793 2.15 REMARK 500 OE2 GLU A 166 O HOH A 796 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE ARG A 92 HE ARG A 92 2656 1.34 REMARK 500 OE1 GLN A 409 NH1 ARG B 349 1554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -165.80 -109.36 REMARK 500 SER A 276 -55.67 -136.03 REMARK 500 PHE A 278 -54.65 66.12 REMARK 500 SER A 337 177.79 79.43 REMARK 500 ASP A 353 58.60 -105.87 REMARK 500 ASP A 359 19.61 58.87 REMARK 500 PHE A 393 61.00 -103.17 REMARK 500 ASP B 29 79.23 -68.64 REMARK 500 THR B 64 -166.93 -110.00 REMARK 500 SER B 276 -66.02 -132.04 REMARK 500 PHE B 278 -56.62 68.05 REMARK 500 SER B 337 177.16 78.09 REMARK 500 ASP B 353 43.75 -105.09 REMARK 500 PHE B 393 62.81 -113.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IK2 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IK2 B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WLH RELATED DB: PDB DBREF 4WLJ A 1 422 UNP Q16773 KAT1_HUMAN 1 422 DBREF 4WLJ B 1 422 UNP Q16773 KAT1_HUMAN 1 422 SEQRES 1 A 422 MET ALA LYS GLN LEU GLN ALA ARG ARG LEU ASP GLY ILE SEQRES 2 A 422 ASP TYR ASN PRO TRP VAL GLU PHE VAL LYS LEU ALA SER SEQRES 3 A 422 GLU HIS ASP VAL VAL ASN LEU GLY GLN GLY PHE PRO ASP SEQRES 4 A 422 PHE PRO PRO PRO ASP PHE ALA VAL GLU ALA PHE GLN HIS SEQRES 5 A 422 ALA VAL SER GLY ASP PHE MET LEU ASN GLN TYR THR LYS SEQRES 6 A 422 THR PHE GLY TYR PRO PRO LEU THR LYS ILE LEU ALA SER SEQRES 7 A 422 PHE PHE GLY GLU LEU LEU GLY GLN GLU ILE ASP PRO LEU SEQRES 8 A 422 ARG ASN VAL LEU VAL THR VAL GLY GLY TYR GLY ALA LEU SEQRES 9 A 422 PHE THR ALA PHE GLN ALA LEU VAL ASP GLU GLY ASP GLU SEQRES 10 A 422 VAL ILE ILE ILE GLU PRO PHE PHE ASP CYS TYR GLU PRO SEQRES 11 A 422 MET THR MET MET ALA GLY GLY ARG PRO VAL PHE VAL SER SEQRES 12 A 422 LEU LYS PRO GLY PRO ILE GLN ASN GLY GLU LEU GLY SER SEQRES 13 A 422 SER SER ASN TRP GLN LEU ASP PRO MET GLU LEU ALA GLY SEQRES 14 A 422 LYS PHE THR SER ARG THR LYS ALA LEU VAL LEU ASN THR SEQRES 15 A 422 PRO ASN ASN PRO LEU GLY LYS VAL PHE SER ARG GLU GLU SEQRES 16 A 422 LEU GLU LEU VAL ALA SER LEU CYS GLN GLN HIS ASP VAL SEQRES 17 A 422 VAL CYS ILE THR ASP GLU VAL TYR GLN TRP MET VAL TYR SEQRES 18 A 422 ASP GLY HIS GLN HIS ILE SER ILE ALA SER LEU PRO GLY SEQRES 19 A 422 MET TRP GLU ARG THR LEU THR ILE GLY SER ALA GLY LYS SEQRES 20 A 422 THR PHE SER ALA THR GLY TRP LYS VAL GLY TRP VAL LEU SEQRES 21 A 422 GLY PRO ASP HIS ILE MET LYS HIS LEU ARG THR VAL HIS SEQRES 22 A 422 GLN ASN SER VAL PHE HIS CYS PRO THR GLN SER GLN ALA SEQRES 23 A 422 ALA VAL ALA GLU SER PHE GLU ARG GLU GLN LEU LEU PHE SEQRES 24 A 422 ARG GLN PRO SER SER TYR PHE VAL GLN PHE PRO GLN ALA SEQRES 25 A 422 MET GLN ARG CYS ARG ASP HIS MET ILE ARG SER LEU GLN SEQRES 26 A 422 SER VAL GLY LEU LYS PRO ILE ILE PRO GLN GLY SER TYR SEQRES 27 A 422 PHE LEU ILE THR ASP ILE SER ASP PHE LYS ARG LYS MET SEQRES 28 A 422 PRO ASP LEU PRO GLY ALA VAL ASP GLU PRO TYR ASP ARG SEQRES 29 A 422 ARG PHE VAL LYS TRP MET ILE LYS ASN LYS GLY LEU VAL SEQRES 30 A 422 ALA ILE PRO VAL SER ILE PHE TYR SER VAL PRO HIS GLN SEQRES 31 A 422 LYS HIS PHE ASP HIS TYR ILE ARG PHE CYS PHE VAL LYS SEQRES 32 A 422 ASP GLU ALA THR LEU GLN ALA MET ASP GLU LYS LEU ARG SEQRES 33 A 422 LYS TRP LYS VAL GLU LEU SEQRES 1 B 422 MET ALA LYS GLN LEU GLN ALA ARG ARG LEU ASP GLY ILE SEQRES 2 B 422 ASP TYR ASN PRO TRP VAL GLU PHE VAL LYS LEU ALA SER SEQRES 3 B 422 GLU HIS ASP VAL VAL ASN LEU GLY GLN GLY PHE PRO ASP SEQRES 4 B 422 PHE PRO PRO PRO ASP PHE ALA VAL GLU ALA PHE GLN HIS SEQRES 5 B 422 ALA VAL SER GLY ASP PHE MET LEU ASN GLN TYR THR LYS SEQRES 6 B 422 THR PHE GLY TYR PRO PRO LEU THR LYS ILE LEU ALA SER SEQRES 7 B 422 PHE PHE GLY GLU LEU LEU GLY GLN GLU ILE ASP PRO LEU SEQRES 8 B 422 ARG ASN VAL LEU VAL THR VAL GLY GLY TYR GLY ALA LEU SEQRES 9 B 422 PHE THR ALA PHE GLN ALA LEU VAL ASP GLU GLY ASP GLU SEQRES 10 B 422 VAL ILE ILE ILE GLU PRO PHE PHE ASP CYS TYR GLU PRO SEQRES 11 B 422 MET THR MET MET ALA GLY GLY ARG PRO VAL PHE VAL SER SEQRES 12 B 422 LEU LYS PRO GLY PRO ILE GLN ASN GLY GLU LEU GLY SER SEQRES 13 B 422 SER SER ASN TRP GLN LEU ASP PRO MET GLU LEU ALA GLY SEQRES 14 B 422 LYS PHE THR SER ARG THR LYS ALA LEU VAL LEU ASN THR SEQRES 15 B 422 PRO ASN ASN PRO LEU GLY LYS VAL PHE SER ARG GLU GLU SEQRES 16 B 422 LEU GLU LEU VAL ALA SER LEU CYS GLN GLN HIS ASP VAL SEQRES 17 B 422 VAL CYS ILE THR ASP GLU VAL TYR GLN TRP MET VAL TYR SEQRES 18 B 422 ASP GLY HIS GLN HIS ILE SER ILE ALA SER LEU PRO GLY SEQRES 19 B 422 MET TRP GLU ARG THR LEU THR ILE GLY SER ALA GLY LYS SEQRES 20 B 422 THR PHE SER ALA THR GLY TRP LYS VAL GLY TRP VAL LEU SEQRES 21 B 422 GLY PRO ASP HIS ILE MET LYS HIS LEU ARG THR VAL HIS SEQRES 22 B 422 GLN ASN SER VAL PHE HIS CYS PRO THR GLN SER GLN ALA SEQRES 23 B 422 ALA VAL ALA GLU SER PHE GLU ARG GLU GLN LEU LEU PHE SEQRES 24 B 422 ARG GLN PRO SER SER TYR PHE VAL GLN PHE PRO GLN ALA SEQRES 25 B 422 MET GLN ARG CYS ARG ASP HIS MET ILE ARG SER LEU GLN SEQRES 26 B 422 SER VAL GLY LEU LYS PRO ILE ILE PRO GLN GLY SER TYR SEQRES 27 B 422 PHE LEU ILE THR ASP ILE SER ASP PHE LYS ARG LYS MET SEQRES 28 B 422 PRO ASP LEU PRO GLY ALA VAL ASP GLU PRO TYR ASP ARG SEQRES 29 B 422 ARG PHE VAL LYS TRP MET ILE LYS ASN LYS GLY LEU VAL SEQRES 30 B 422 ALA ILE PRO VAL SER ILE PHE TYR SER VAL PRO HIS GLN SEQRES 31 B 422 LYS HIS PHE ASP HIS TYR ILE ARG PHE CYS PHE VAL LYS SEQRES 32 B 422 ASP GLU ALA THR LEU GLN ALA MET ASP GLU LYS LEU ARG SEQRES 33 B 422 LYS TRP LYS VAL GLU LEU HET IK2 A 501 33 HET IK2 B 501 33 HETNAM IK2 4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE FORMUL 3 IK2 2(C10 H15 N2 O8 P) FORMUL 5 HOH *392(H2 O) HELIX 1 AA1 ALA A 7 ASP A 11 5 5 HELIX 2 AA2 TRP A 18 HIS A 28 1 11 HELIX 3 AA3 PRO A 43 SER A 55 1 13 HELIX 4 AA4 ASP A 57 GLN A 62 5 6 HELIX 5 AA5 TYR A 69 GLY A 85 1 17 HELIX 6 AA6 ASP A 89 ASN A 93 1 5 HELIX 7 AA7 VAL A 98 VAL A 112 1 15 HELIX 8 AA8 CYS A 127 ALA A 135 1 9 HELIX 9 AA9 SER A 156 TRP A 160 5 5 HELIX 10 AB1 ASP A 163 PHE A 171 1 9 HELIX 11 AB2 SER A 192 ASP A 207 1 16 HELIX 12 AB3 SER A 228 LEU A 232 5 5 HELIX 13 AB4 MET A 235 GLU A 237 5 3 HELIX 14 AB5 ALA A 245 PHE A 249 1 5 HELIX 15 AB6 ALA A 251 LYS A 255 5 5 HELIX 16 AB7 PRO A 262 ASN A 275 1 14 HELIX 17 AB8 PRO A 281 LEU A 298 1 18 HELIX 18 AB9 SER A 304 SER A 326 1 23 HELIX 19 AC1 ILE A 344 MET A 351 1 8 HELIX 20 AC2 PRO A 361 GLY A 375 1 15 HELIX 21 AC3 SER A 382 TYR A 385 5 4 HELIX 22 AC4 SER A 386 LYS A 391 1 6 HELIX 23 AC5 ASP A 404 LYS A 417 1 14 HELIX 24 AC6 ALA B 7 ASP B 11 5 5 HELIX 25 AC7 PRO B 17 GLU B 27 1 11 HELIX 26 AC8 PRO B 43 VAL B 54 1 12 HELIX 27 AC9 ASP B 57 GLN B 62 5 6 HELIX 28 AD1 TYR B 69 GLY B 85 1 17 HELIX 29 AD2 ASP B 89 ASN B 93 1 5 HELIX 30 AD3 VAL B 98 VAL B 112 1 15 HELIX 31 AD4 CYS B 127 ALA B 135 1 9 HELIX 32 AD5 SER B 156 TRP B 160 5 5 HELIX 33 AD6 ASP B 163 PHE B 171 1 9 HELIX 34 AD7 SER B 192 ASP B 207 1 16 HELIX 35 AD8 SER B 228 LEU B 232 5 5 HELIX 36 AD9 MET B 235 GLU B 237 5 3 HELIX 37 AE1 ALA B 245 SER B 250 1 6 HELIX 38 AE2 ALA B 251 LYS B 255 5 5 HELIX 39 AE3 PRO B 262 ASN B 275 1 14 HELIX 40 AE4 PRO B 281 LEU B 298 1 18 HELIX 41 AE5 SER B 304 SER B 326 1 23 HELIX 42 AE6 ILE B 344 MET B 351 1 8 HELIX 43 AE7 PRO B 361 GLY B 375 1 15 HELIX 44 AE8 SER B 382 TYR B 385 5 4 HELIX 45 AE9 SER B 386 LYS B 391 1 6 HELIX 46 AF1 ASP B 404 LEU B 422 1 19 SHEET 1 AA1 2 VAL A 31 ASN A 32 0 SHEET 2 AA1 2 LEU A 376 VAL A 377 1 O VAL A 377 N VAL A 31 SHEET 1 AA2 7 VAL A 94 THR A 97 0 SHEET 2 AA2 7 GLY A 257 LEU A 260 -1 O GLY A 257 N THR A 97 SHEET 3 AA2 7 THR A 239 SER A 244 -1 N THR A 241 O LEU A 260 SHEET 4 AA2 7 VAL A 209 ASP A 213 1 N THR A 212 O LEU A 240 SHEET 5 AA2 7 THR A 175 ASN A 181 1 N LEU A 178 O ILE A 211 SHEET 6 AA2 7 GLU A 117 GLU A 122 1 N GLU A 117 O LYS A 176 SHEET 7 AA2 7 ARG A 138 SER A 143 1 O VAL A 142 N GLU A 122 SHEET 1 AA3 4 LYS A 330 ILE A 332 0 SHEET 2 AA3 4 PHE A 339 ASP A 343 -1 O ASP A 343 N LYS A 330 SHEET 3 AA3 4 TYR A 396 CYS A 400 -1 O PHE A 399 N LEU A 340 SHEET 4 AA3 4 ILE A 379 PRO A 380 -1 N ILE A 379 O ARG A 398 SHEET 1 AA4 2 VAL B 31 ASN B 32 0 SHEET 2 AA4 2 LEU B 376 VAL B 377 1 O VAL B 377 N VAL B 31 SHEET 1 AA5 7 VAL B 94 THR B 97 0 SHEET 2 AA5 7 GLY B 257 LEU B 260 -1 O GLY B 257 N THR B 97 SHEET 3 AA5 7 THR B 239 SER B 244 -1 N THR B 241 O LEU B 260 SHEET 4 AA5 7 VAL B 209 ASP B 213 1 N THR B 212 O LEU B 240 SHEET 5 AA5 7 THR B 175 ASN B 181 1 N LEU B 180 O ASP B 213 SHEET 6 AA5 7 GLU B 117 GLU B 122 1 N ILE B 119 O VAL B 179 SHEET 7 AA5 7 ARG B 138 SER B 143 1 O VAL B 142 N GLU B 122 SHEET 1 AA6 4 LYS B 330 ILE B 332 0 SHEET 2 AA6 4 PHE B 339 ASP B 343 -1 O ASP B 343 N LYS B 330 SHEET 3 AA6 4 TYR B 396 CYS B 400 -1 O PHE B 399 N LEU B 340 SHEET 4 AA6 4 ILE B 379 PRO B 380 -1 N ILE B 379 O ARG B 398 CISPEP 1 GLU A 122 PRO A 123 0 1.49 CISPEP 2 THR A 182 PRO A 183 0 -8.94 CISPEP 3 ASN A 185 PRO A 186 0 11.35 CISPEP 4 GLU B 122 PRO B 123 0 0.94 CISPEP 5 THR B 182 PRO B 183 0 -10.13 CISPEP 6 ASN B 185 PRO B 186 0 20.59 SITE 1 AC1 16 GLY A 36 GLY A 99 GLY A 100 TYR A 101 SITE 2 AC1 16 PHE A 125 ASN A 181 ASN A 185 ASP A 213 SITE 3 AC1 16 VAL A 215 TYR A 216 SER A 244 LYS A 247 SITE 4 AC1 16 LYS A 255 ARG A 398 HOH A 646 TYR B 63 SITE 1 AC2 16 TYR A 63 GLY B 36 GLY B 99 GLY B 100 SITE 2 AC2 16 TYR B 101 PHE B 125 ASN B 181 ASN B 185 SITE 3 AC2 16 ASP B 213 VAL B 215 TYR B 216 SER B 244 SITE 4 AC2 16 LYS B 247 LYS B 255 ARG B 398 HOH B 683 CRYST1 102.740 107.650 81.750 90.00 112.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009733 0.000000 0.004128 0.00000 SCALE2 0.000000 0.009289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013287 0.00000