HEADER LYASE 07-OCT-14 4WLK TITLE STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM B.SUBTILIS COMPLEXED WITH TITLE 2 REACTION PRODUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: YUIC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YUIC, BSU32070; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA-2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS LYTIC TRANSGLYCOSYLASE, PEPTIDOGLYCAN REMODELLING, STATIONARY PHASE, KEYWDS 2 MLTA, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.H.X.QUAY,A.R.COLE,A.CRYAR,K.THALASSINOS,M.A.WILLIAMS,S.BHAKTA, AUTHOR 2 N.H.KEEP REVDAT 3 10-JAN-24 4WLK 1 REMARK REVDAT 2 21-SEP-16 4WLK 1 JRNL REVDAT 1 08-JUL-15 4WLK 0 JRNL AUTH D.H.QUAY,A.R.COLE,A.CRYAR,K.THALASSINOS,M.A.WILLIAMS, JRNL AUTH 2 S.BHAKTA,N.H.KEEP JRNL TITL STRUCTURE OF THE STATIONARY PHASE SURVIVAL PROTEIN YUIC FROM JRNL TITL 2 B.SUBTILIS. JRNL REF BMC STRUCT.BIOL. V. 15 12 2015 JRNL REFN ESSN 1472-6807 JRNL PMID 26163297 JRNL DOI 10.1186/S12900-015-0039-Z REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5052 - 3.8833 1.00 2682 140 0.1409 0.1631 REMARK 3 2 3.8833 - 3.0825 1.00 2681 135 0.1593 0.2147 REMARK 3 3 3.0825 - 2.6930 1.00 2691 125 0.1650 0.1976 REMARK 3 4 2.6930 - 2.4468 1.00 2658 155 0.1774 0.2159 REMARK 3 5 2.4468 - 2.2714 0.99 2667 125 0.1949 0.2275 REMARK 3 6 2.2714 - 2.1375 0.98 2646 143 0.2281 0.2424 REMARK 3 7 2.1375 - 2.0304 0.99 2635 145 0.2685 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2384 REMARK 3 ANGLE : 0.795 3250 REMARK 3 CHIRALITY : 0.033 376 REMARK 3 PLANARITY : 0.002 406 REMARK 3 DIHEDRAL : 12.435 893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3605 16.8938 -8.5428 REMARK 3 T TENSOR REMARK 3 T11: 0.3139 T22: 0.5453 REMARK 3 T33: 0.4861 T12: 0.0635 REMARK 3 T13: -0.0309 T23: -0.1310 REMARK 3 L TENSOR REMARK 3 L11: 0.4152 L22: 0.0329 REMARK 3 L33: 0.2811 L12: -0.0579 REMARK 3 L13: 0.2964 L23: -0.0788 REMARK 3 S TENSOR REMARK 3 S11: 0.1838 S12: 0.6488 S13: -0.2967 REMARK 3 S21: 0.0389 S22: 0.0352 S23: 0.0023 REMARK 3 S31: 0.5710 S32: 1.1520 S33: 0.0092 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3888 24.0565 3.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.2319 REMARK 3 T33: 0.1828 T12: -0.0160 REMARK 3 T13: 0.0022 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.1046 L22: 0.6916 REMARK 3 L33: 0.3147 L12: 0.0369 REMARK 3 L13: -0.1081 L23: -0.0215 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.0304 S13: -0.1979 REMARK 3 S21: 0.0836 S22: -0.0113 S23: 0.1705 REMARK 3 S31: -0.1154 S32: 0.0638 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7725 29.4783 -3.3819 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.2331 REMARK 3 T33: 0.2225 T12: -0.0127 REMARK 3 T13: 0.0064 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.3169 L22: 0.1877 REMARK 3 L33: 0.1456 L12: 0.1095 REMARK 3 L13: -0.1222 L23: -0.1681 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0749 S13: 0.0547 REMARK 3 S21: -0.1008 S22: 0.1731 S23: -0.0372 REMARK 3 S31: -0.1524 S32: 0.1753 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5168 26.2170 2.7615 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: 0.1903 REMARK 3 T33: 0.1430 T12: -0.0315 REMARK 3 T13: -0.0382 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.7059 L22: 0.4312 REMARK 3 L33: 0.4500 L12: -0.1970 REMARK 3 L13: -0.4122 L23: -0.1652 REMARK 3 S TENSOR REMARK 3 S11: 0.0728 S12: -0.0353 S13: -0.1245 REMARK 3 S21: 0.1682 S22: -0.0947 S23: -0.2199 REMARK 3 S31: -0.0354 S32: 0.1089 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9201 20.4972 1.5015 REMARK 3 T TENSOR REMARK 3 T11: 0.2007 T22: 0.1763 REMARK 3 T33: 0.2552 T12: -0.0336 REMARK 3 T13: -0.0424 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.1560 L22: 0.0788 REMARK 3 L33: 0.0718 L12: -0.0105 REMARK 3 L13: 0.0735 L23: -0.0627 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: 0.1415 S13: 0.2444 REMARK 3 S21: 0.0079 S22: -0.1965 S23: -0.0314 REMARK 3 S31: -0.0897 S32: -0.0262 S33: 0.0053 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6522 11.9152 -0.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.2453 REMARK 3 T33: 0.2840 T12: -0.0155 REMARK 3 T13: -0.0120 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.0303 L22: 0.1035 REMARK 3 L33: 0.0359 L12: -0.0100 REMARK 3 L13: 0.0284 L23: 0.0235 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.2030 S13: -0.3662 REMARK 3 S21: -0.2269 S22: -0.1414 S23: -0.1387 REMARK 3 S31: -0.1955 S32: -0.1975 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0647 0.2502 4.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.2535 T22: 0.2772 REMARK 3 T33: 0.2847 T12: 0.0344 REMARK 3 T13: 0.0477 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.0324 L22: 0.6310 REMARK 3 L33: 0.2126 L12: 0.1526 REMARK 3 L13: -0.0361 L23: -0.1323 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: 0.1061 S13: 0.1458 REMARK 3 S21: 0.2204 S22: 0.2201 S23: -0.6366 REMARK 3 S31: -0.0568 S32: 0.0202 S33: -0.0007 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3830 -10.4943 17.6837 REMARK 3 T TENSOR REMARK 3 T11: 0.3390 T22: 0.2569 REMARK 3 T33: 0.2824 T12: 0.0096 REMARK 3 T13: 0.0716 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.4439 L22: 0.1883 REMARK 3 L33: 0.2781 L12: 0.0563 REMARK 3 L13: 0.0656 L23: -0.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.1085 S12: -0.3877 S13: -0.3577 REMARK 3 S21: 0.4263 S22: 0.0078 S23: 0.2372 REMARK 3 S31: 0.5183 S32: -0.1629 S33: 0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6874 -0.3248 25.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.2993 T22: 0.4695 REMARK 3 T33: 0.2920 T12: 0.0593 REMARK 3 T13: -0.0436 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 0.1749 L22: 0.8662 REMARK 3 L33: 0.0149 L12: 0.3927 REMARK 3 L13: -0.0455 L23: -0.1065 REMARK 3 S TENSOR REMARK 3 S11: -0.0747 S12: -0.2542 S13: 0.3132 REMARK 3 S21: 0.2119 S22: -0.0206 S23: 0.3176 REMARK 3 S31: 0.0274 S32: 0.7215 S33: 0.0206 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5788 -7.5780 18.1889 REMARK 3 T TENSOR REMARK 3 T11: 0.2453 T22: 0.3977 REMARK 3 T33: 0.4351 T12: 0.1154 REMARK 3 T13: -0.0983 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 0.2066 L22: 0.4205 REMARK 3 L33: 2.1263 L12: 0.2816 REMARK 3 L13: -0.4515 L23: -0.4519 REMARK 3 S TENSOR REMARK 3 S11: -0.3609 S12: -0.0450 S13: 0.4051 REMARK 3 S21: 0.1138 S22: 0.1651 S23: -0.3892 REMARK 3 S31: 0.2665 S32: 0.5582 S33: -0.1117 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8153 2.6267 6.2689 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1562 REMARK 3 T33: 0.1653 T12: 0.0309 REMARK 3 T13: -0.0011 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.6334 L22: 0.0682 REMARK 3 L33: 0.6991 L12: 0.0426 REMARK 3 L13: -0.2151 L23: -0.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: 0.2484 S13: 0.0157 REMARK 3 S21: -0.0903 S22: -0.0731 S23: 0.0896 REMARK 3 S31: 0.0415 S32: -0.0651 S33: -0.0209 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5010 -1.3128 12.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.1716 REMARK 3 T33: 0.2130 T12: 0.0240 REMARK 3 T13: 0.0203 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1442 L22: 0.1505 REMARK 3 L33: 0.0879 L12: -0.0659 REMARK 3 L13: 0.1046 L23: -0.0884 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.1894 S13: -0.2500 REMARK 3 S21: 0.1928 S22: 0.2133 S23: -0.0777 REMARK 3 S31: -0.0661 S32: 0.0855 S33: 0.0022 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5336 -5.5810 10.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1648 REMARK 3 T33: 0.1571 T12: 0.0222 REMARK 3 T13: 0.0219 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.1332 L22: 0.5735 REMARK 3 L33: 0.1908 L12: -0.2480 REMARK 3 L13: -0.1342 L23: 0.2921 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: -0.0809 S13: -0.0707 REMARK 3 S21: 0.0318 S22: 0.0921 S23: 0.0214 REMARK 3 S31: 0.1391 S32: 0.1282 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 152 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4072 -3.0939 -1.8816 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: 0.2760 REMARK 3 T33: 0.2539 T12: -0.0064 REMARK 3 T13: 0.0124 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.2873 L22: 0.2605 REMARK 3 L33: 0.0329 L12: 0.1976 REMARK 3 L13: -0.0855 L23: -0.0860 REMARK 3 S TENSOR REMARK 3 S11: -0.1020 S12: 0.4218 S13: 0.1709 REMARK 3 S21: -0.2188 S22: 0.3420 S23: -0.1015 REMARK 3 S31: 0.3699 S32: 0.0825 S33: 0.0007 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.8464 4.1226 8.6799 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1762 REMARK 3 T33: 0.1893 T12: -0.0191 REMARK 3 T13: -0.0047 T23: -0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.0074 L22: 0.8258 REMARK 3 L33: 0.0732 L12: -0.0462 REMARK 3 L13: -0.0220 L23: 0.2195 REMARK 3 S TENSOR REMARK 3 S11: -0.1983 S12: 0.0003 S13: -0.0677 REMARK 3 S21: 0.1761 S22: -0.0332 S23: 0.3190 REMARK 3 S31: -0.1324 S32: 0.1100 S33: -0.0156 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 168 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8857 13.4065 10.9062 REMARK 3 T TENSOR REMARK 3 T11: 0.2610 T22: 0.2653 REMARK 3 T33: 0.2867 T12: -0.0348 REMARK 3 T13: -0.0154 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.0605 L22: 0.0269 REMARK 3 L33: 0.0557 L12: 0.0363 REMARK 3 L13: -0.0166 L23: -0.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.1155 S12: -0.2699 S13: 0.3102 REMARK 3 S21: 0.3006 S22: 0.0176 S23: -0.1876 REMARK 3 S31: -0.2527 S32: -0.0644 S33: 0.0000 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7524 15.0467 5.1452 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.3262 REMARK 3 T33: 0.2948 T12: -0.0319 REMARK 3 T13: -0.0493 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.1599 L22: 0.2285 REMARK 3 L33: 0.2754 L12: -0.0395 REMARK 3 L13: -0.1782 L23: 0.1939 REMARK 3 S TENSOR REMARK 3 S11: 0.1979 S12: -0.0480 S13: -0.1538 REMARK 3 S21: 0.1524 S22: -0.0977 S23: 0.1616 REMARK 3 S31: 0.1011 S32: 0.1150 S33: 0.0014 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2398 35.4209 -1.3886 REMARK 3 T TENSOR REMARK 3 T11: 0.3102 T22: 0.2806 REMARK 3 T33: 0.4302 T12: -0.0480 REMARK 3 T13: 0.0036 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.5104 L22: 0.2827 REMARK 3 L33: 1.6085 L12: -0.3469 REMARK 3 L13: 0.4891 L23: -0.0990 REMARK 3 S TENSOR REMARK 3 S11: -0.1868 S12: 0.1598 S13: 0.5833 REMARK 3 S21: -0.3450 S22: 0.0217 S23: -0.2214 REMARK 3 S31: -0.7726 S32: 0.1504 S33: -0.0593 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 194 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8329 32.7813 -12.0447 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.3674 REMARK 3 T33: 0.2026 T12: -0.0277 REMARK 3 T13: 0.0133 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 0.2312 L22: 0.2605 REMARK 3 L33: 0.1281 L12: -0.2215 REMARK 3 L13: 0.0410 L23: 0.0366 REMARK 3 S TENSOR REMARK 3 S11: 0.1074 S12: 0.3577 S13: -0.1070 REMARK 3 S21: -0.0847 S22: -0.2292 S23: 0.0487 REMARK 3 S31: -0.1048 S32: -0.0287 S33: -0.0041 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9041 20.6945 -15.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.3210 REMARK 3 T33: 0.2652 T12: 0.0622 REMARK 3 T13: 0.0059 T23: -0.0646 REMARK 3 L TENSOR REMARK 3 L11: 0.2072 L22: 0.1424 REMARK 3 L33: 0.7611 L12: 0.1375 REMARK 3 L13: -0.2310 L23: -0.3133 REMARK 3 S TENSOR REMARK 3 S11: 0.1575 S12: 0.0575 S13: -0.2345 REMARK 3 S21: -0.2865 S22: -0.3508 S23: 0.1837 REMARK 3 S31: 0.1465 S32: 0.4513 S33: -0.0304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NOT BUFFERED REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19631 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 42.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4WJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% GLYCEROL ETHOXYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.60500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.49587 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.62333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 73.60500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 42.49587 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.62333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 73.60500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 42.49587 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.62333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 84.99173 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.24667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 84.99173 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.24667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 84.99173 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.24667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 52 REMARK 465 LEU A 53 REMARK 465 LYS A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 GLN A 57 REMARK 465 GLN A 58 REMARK 465 LYS A 59 REMARK 465 GLN A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 THR A 63 REMARK 465 THR A 64 REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 ALA A 67 REMARK 465 GLU A 68 REMARK 465 ASP A 69 REMARK 465 LYS A 70 REMARK 465 THR A 71 REMARK 465 LYS A 217 REMARK 465 ARG B 52 REMARK 465 LEU B 53 REMARK 465 LYS B 54 REMARK 465 ALA B 55 REMARK 465 LEU B 56 REMARK 465 GLN B 57 REMARK 465 GLN B 58 REMARK 465 LYS B 59 REMARK 465 GLN B 60 REMARK 465 THR B 61 REMARK 465 GLN B 62 REMARK 465 THR B 63 REMARK 465 THR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 ALA B 67 REMARK 465 GLU B 68 REMARK 465 ASP B 69 REMARK 465 LYS B 70 REMARK 465 THR B 71 REMARK 465 LYS B 72 REMARK 465 LYS B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 121 -166.35 -163.93 REMARK 500 TYR A 144 -53.78 -128.41 REMARK 500 TYR B 144 -51.43 -136.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3QL B 301 DBREF 4WLK A 52 217 UNP O32108 YUIC_BACSU 52 217 DBREF 4WLK B 52 217 UNP O32108 YUIC_BACSU 52 217 SEQRES 1 A 166 ARG LEU LYS ALA LEU GLN GLN LYS GLN THR GLN THR THR SEQRES 2 A 166 SER ALA ALA GLU ASP LYS THR LYS PRO LEU GLU GLU ALA SEQRES 3 A 166 PHE ASP TRP ASP GLU TYR PRO VAL GLN ARG VAL THR ALA SEQRES 4 A 166 THR GLY TYR THR ALA GLY ALA GLU SER THR GLY LYS ASN SEQRES 5 A 166 PRO GLY ASP PRO LEU TYR GLY LEU THR TYR SER GLY VAL SEQRES 6 A 166 LYS VAL LYS ARG ASP LEU TYR SER THR VAL ALA ALA ASP SEQRES 7 A 166 PRO SER VAL PHE PRO ILE GLY THR ILE LEU PHE ILE PRO SEQRES 8 A 166 ASN TYR GLY LEU GLY VAL VAL ALA ASP THR GLY SER ALA SEQRES 9 A 166 ILE LYS GLY ASN ARG LEU ASP LEU TYR PHE GLU THR VAL SEQRES 10 A 166 LYS ASP VAL TYR ASN GLU TRP GLY LYS LYS THR LEU ASP SEQRES 11 A 166 VAL TYR VAL ILE LYS LYS GLY THR GLY LYS ILE THR GLU SEQRES 12 A 166 ASP GLU LEU GLU LYS LEU ASN GLU THR LYS SER LEU GLN SEQRES 13 A 166 VAL PHE ARG ASN GLN TYR LYS THR VAL LYS SEQRES 1 B 166 ARG LEU LYS ALA LEU GLN GLN LYS GLN THR GLN THR THR SEQRES 2 B 166 SER ALA ALA GLU ASP LYS THR LYS PRO LEU GLU GLU ALA SEQRES 3 B 166 PHE ASP TRP ASP GLU TYR PRO VAL GLN ARG VAL THR ALA SEQRES 4 B 166 THR GLY TYR THR ALA GLY ALA GLU SER THR GLY LYS ASN SEQRES 5 B 166 PRO GLY ASP PRO LEU TYR GLY LEU THR TYR SER GLY VAL SEQRES 6 B 166 LYS VAL LYS ARG ASP LEU TYR SER THR VAL ALA ALA ASP SEQRES 7 B 166 PRO SER VAL PHE PRO ILE GLY THR ILE LEU PHE ILE PRO SEQRES 8 B 166 ASN TYR GLY LEU GLY VAL VAL ALA ASP THR GLY SER ALA SEQRES 9 B 166 ILE LYS GLY ASN ARG LEU ASP LEU TYR PHE GLU THR VAL SEQRES 10 B 166 LYS ASP VAL TYR ASN GLU TRP GLY LYS LYS THR LEU ASP SEQRES 11 B 166 VAL TYR VAL ILE LYS LYS GLY THR GLY LYS ILE THR GLU SEQRES 12 B 166 ASP GLU LEU GLU LYS LEU ASN GLU THR LYS SER LEU GLN SEQRES 13 B 166 VAL PHE ARG ASN GLN TYR LYS THR VAL LYS HET 3QL A 301 28 HET 3QL B 301 28 HETNAM 3QL N-[(1R,2S,3R,4R,5R)-2-[(2S,3R,4R,5S,6R)-3-ACETAMIDO-6- HETNAM 2 3QL (HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YL]OXY-3- HETNAM 3 3QL OXIDANYL-6,8-DIOXABICYCLO[3.2.1]OCTAN-4-YL]ETHANAMIDE FORMUL 3 3QL 2(C16 H26 N2 O10) FORMUL 5 HOH *178(H2 O) HELIX 1 AA1 PRO A 73 ALA A 77 5 5 HELIX 2 AA2 ASP A 79 TYR A 83 5 5 HELIX 3 AA3 GLY A 96 GLY A 101 1 6 HELIX 4 AA4 THR A 167 TRP A 175 1 9 HELIX 5 AA5 THR A 193 GLU A 202 1 10 HELIX 6 AA6 THR A 203 GLN A 207 5 5 HELIX 7 AA7 PHE A 209 TYR A 213 5 5 HELIX 8 AA8 LEU B 74 PHE B 78 1 5 HELIX 9 AA9 ASP B 79 TYR B 83 5 5 HELIX 10 AB1 GLY B 96 GLY B 101 1 6 HELIX 11 AB2 THR B 167 TRP B 175 1 9 HELIX 12 AB3 THR B 193 GLU B 202 1 10 HELIX 13 AB4 THR B 203 SER B 205 5 3 HELIX 14 AB5 LEU B 206 ASN B 211 1 6 SHEET 1 AA1 7 VAL A 85 TYR A 93 0 SHEET 2 AA1 7 ARG A 160 TYR A 164 1 O LEU A 163 N THR A 91 SHEET 3 AA1 7 TYR A 123 ALA A 128 -1 N ALA A 127 O ASP A 162 SHEET 4 AA1 7 GLY A 145 ASP A 151 1 O VAL A 148 N SER A 124 SHEET 5 AA1 7 ILE A 138 ILE A 141 -1 N ILE A 141 O GLY A 145 SHEET 6 AA1 7 LYS B 178 LYS B 186 -1 O LYS B 186 N ILE A 138 SHEET 7 AA1 7 VAL A 85 TYR A 93 -1 N ALA A 90 O LYS B 178 SHEET 1 AA2 7 LYS A 178 LYS A 186 0 SHEET 2 AA2 7 VAL B 85 TYR B 93 -1 O VAL B 88 N LEU A 180 SHEET 3 AA2 7 ARG B 160 TYR B 164 1 O LEU B 163 N THR B 91 SHEET 4 AA2 7 TYR B 123 ALA B 128 -1 N ALA B 127 O ASP B 162 SHEET 5 AA2 7 GLY B 145 ASP B 151 1 O VAL B 148 N SER B 124 SHEET 6 AA2 7 ILE B 138 ILE B 141 -1 N LEU B 139 O GLY B 147 SHEET 7 AA2 7 LYS A 178 LYS A 186 -1 N LYS A 186 O ILE B 138 SITE 1 AC1 16 TYR A 93 SER A 99 THR A 100 LYS A 102 SITE 2 AC1 16 LEU A 111 THR A 112 TYR A 113 ALA A 127 SITE 3 AC1 16 ASP A 151 THR A 152 GLY A 153 SER A 154 SITE 4 AC1 16 ALA A 155 ASP A 162 HOH A 428 HOH B 416 SITE 1 AC2 17 TYR B 93 SER B 99 THR B 100 LYS B 102 SITE 2 AC2 17 LEU B 111 VAL B 118 ASP B 151 THR B 152 SITE 3 AC2 17 GLY B 153 SER B 154 ALA B 155 ASP B 162 SITE 4 AC2 17 HOH B 408 HOH B 417 HOH B 424 HOH B 434 SITE 5 AC2 17 HOH B 454 CRYST1 147.210 147.210 37.870 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006793 0.003922 0.000000 0.00000 SCALE2 0.000000 0.007844 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026406 0.00000