HEADER HYDROLASE 08-OCT-14 4WMC TITLE OXA-48 COVALENT COMPLEX WITH AVIBACTAM INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, F, G, H; COMPND 4 FRAGMENT: UNP RESIDUES 24-265; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-LACTAMASE; COMPND 9 CHAIN: D, E; COMPND 10 FRAGMENT: UNP RESIDUES 24-265; COMPND 11 EC: 3.5.2.6; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48, BLAOXA-48, KPE71T_00045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 9 ORGANISM_TAXID: 573; SOURCE 10 GENE: BLA OXA-48, BLAOXA-48, KPE71T_00045; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXA-48, CLASS D CARBAPENEMASE, AVIBACTAM, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MANGANI,M.BENVENUTI,J.D.DOCQUIER REVDAT 5 10-JAN-24 4WMC 1 REMARK REVDAT 4 25-AUG-21 4WMC 1 REMARK HETSYN SITE ATOM REVDAT 3 03-JUN-15 4WMC 1 REVDAT 2 04-MAR-15 4WMC 1 JRNL REVDAT 1 03-DEC-14 4WMC 0 JRNL AUTH S.D.LAHIRI,S.MANGANI,H.JAHIC,M.BENVENUTI,T.F.DURAND-REVILLE, JRNL AUTH 2 F.DE LUCA,D.E.EHMANN,G.M.ROSSOLINI,R.A.ALM,J.D.DOCQUIER JRNL TITL MOLECULAR BASIS OF SELECTIVE INHIBITION AND SLOW JRNL TITL 2 REVERSIBILITY OF AVIBACTAM AGAINST CLASS D CARBAPENEMASES: A JRNL TITL 3 STRUCTURE-GUIDED STUDY OF OXA-24 AND OXA-48. JRNL REF ACS CHEM.BIOL. V. 10 591 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 25406838 JRNL DOI 10.1021/CB500703P REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 85927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 312 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 15281 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 145 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.418 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 15807 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 21398 ; 1.695 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1852 ; 7.058 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 807 ;37.705 ;24.461 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2706 ;17.928 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 90 ;19.544 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2272 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12018 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7471 ; 2.157 ; 2.810 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9302 ; 3.389 ; 4.197 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 8336 ; 2.381 ; 2.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4WMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9834 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 65.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3HBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 10% PEG8000, 5-8% 1 REMARK 280 -BUTANOL, 10 MG/ML OXA-48, AND 3 MG/ML AVIBACTAM, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 82.73250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 HIS A 38 REMARK 465 LYS A 39 REMARK 465 SER A 40 REMARK 465 ASP B 148 REMARK 465 ILE B 149 REMARK 465 SER B 150 REMARK 465 GLY B 151 REMARK 465 ASN B 152 REMARK 465 VAL B 153 REMARK 465 ASP B 154 REMARK 465 TRP C 95 REMARK 465 ASP C 96 REMARK 465 GLY C 97 REMARK 465 GLN C 98 REMARK 465 THR C 99 REMARK 465 SER C 150 REMARK 465 GLY C 151 REMARK 465 ASN C 152 REMARK 465 VAL C 153 REMARK 465 THR C 213 REMARK 465 ARG C 214 REMARK 465 ILE C 215 REMARK 465 SER D 150 REMARK 465 GLY D 151 REMARK 465 ASN D 152 REMARK 465 VAL D 153 REMARK 465 ASP D 154 REMARK 465 SER D 155 REMARK 465 LYS E 39 REMARK 465 SER E 40 REMARK 465 GLN E 41 REMARK 465 GLU F 24 REMARK 465 ILE F 102 REMARK 465 GLU G 24 REMARK 465 ILE G 149 REMARK 465 SER G 150 REMARK 465 GLY G 151 REMARK 465 ASN G 152 REMARK 465 ARG G 214 REMARK 465 ILE G 215 REMARK 465 GLU H 24 REMARK 465 THR H 36 REMARK 465 GLU H 37 REMARK 465 HIS H 38 REMARK 465 LYS H 39 REMARK 465 SER H 40 REMARK 465 TRP H 95 REMARK 465 ASP H 96 REMARK 465 GLY H 97 REMARK 465 GLN H 98 REMARK 465 THR H 99 REMARK 465 ARG H 100 REMARK 465 ASP H 101 REMARK 465 ILE H 102 REMARK 465 ALA H 103 REMARK 465 THR H 104 REMARK 465 TRP H 105 REMARK 465 ASN H 106 REMARK 465 SER H 150 REMARK 465 GLY H 151 REMARK 465 ASN H 152 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 ARG C 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 GLN D 41 CG CD OE1 NE2 REMARK 470 LEU E 59 CG CD1 CD2 REMARK 470 LYS E 60 CG CD CE NZ REMARK 470 LYS F 39 CG CD CE NZ REMARK 470 ASN F 152 CB CG OD1 ND2 REMARK 470 GLU G 37 CG CD OE1 OE2 REMARK 470 LYS G 39 CG CD CE NZ REMARK 470 ARG G 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 94 CG CD CE NZ REMARK 470 ARG H 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 262 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NAA NXL D 301 O HOH D 401 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 115 CG - SD - CE ANGL. DEV. = -12.7 DEGREES REMARK 500 MET D 115 CG - SD - CE ANGL. DEV. = -16.5 DEGREES REMARK 500 MET E 115 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 PRO F 265 C - N - CD ANGL. DEV. = 21.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 38.84 70.61 REMARK 500 ASN A 58 87.95 -162.78 REMARK 500 ALA A 69 -138.81 54.66 REMARK 500 ASP A 88 -178.27 -170.34 REMARK 500 SER A 155 15.77 -154.97 REMARK 500 ASP A 159 15.01 -148.32 REMARK 500 ALA B 69 -137.73 49.23 REMARK 500 HIS B 182 45.51 -74.56 REMARK 500 SER B 244 2.35 -62.80 REMARK 500 ASN C 58 104.01 -166.25 REMARK 500 ALA C 69 -127.35 41.69 REMARK 500 ASN C 110 -169.99 -109.38 REMARK 500 TRP C 157 -9.84 -57.74 REMARK 500 ALA D 69 -133.61 44.40 REMARK 500 GLU D 147 23.99 48.71 REMARK 500 ASP D 159 17.11 -141.10 REMARK 500 GLN E 26 131.71 -177.70 REMARK 500 ASN E 58 94.53 -165.88 REMARK 500 ALA E 69 -137.04 47.40 REMARK 500 SER E 70 1.20 -69.61 REMARK 500 ASN E 106 59.08 -90.49 REMARK 500 GLU E 147 14.50 54.66 REMARK 500 VAL E 153 -36.88 -36.48 REMARK 500 SER E 155 10.86 -154.23 REMARK 500 ASP E 159 20.62 -150.85 REMARK 500 ASP E 230 16.58 -140.63 REMARK 500 MET E 241 66.87 -154.98 REMARK 500 GLU F 37 -39.47 -39.47 REMARK 500 ASN F 58 89.72 -166.42 REMARK 500 ALA F 69 -137.51 56.64 REMARK 500 THR F 104 -6.57 -51.88 REMARK 500 ASN F 106 51.34 -98.12 REMARK 500 ASN F 110 -166.87 -108.45 REMARK 500 SER F 118 69.47 61.39 REMARK 500 VAL F 153 -13.93 -49.57 REMARK 500 TRP F 157 0.87 -63.17 REMARK 500 ASP F 159 43.63 -153.21 REMARK 500 LEU F 247 -33.64 -36.93 REMARK 500 GLU G 37 -37.56 -33.90 REMARK 500 ASN G 58 101.69 -161.26 REMARK 500 ALA G 69 -132.14 50.62 REMARK 500 THR G 104 11.16 -68.09 REMARK 500 ASN G 106 62.89 -107.01 REMARK 500 SER G 155 5.02 -156.98 REMARK 500 ASP G 159 12.36 -150.04 REMARK 500 ALA H 69 -129.31 47.56 REMARK 500 ILE H 74 -72.74 -63.14 REMARK 500 GLN H 91 127.65 -39.90 REMARK 500 SER H 118 63.74 60.22 REMARK 500 SER H 155 15.35 -140.96 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NXL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NXL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO2 F 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL C 301 and SER C REMARK 800 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL D 301 and SER D REMARK 800 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL E 301 and SER E REMARK 800 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL F 301 and SER F REMARK 800 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL G 301 and SER G REMARK 800 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide NXL H 301 and SER H REMARK 800 70 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HBR RELATED DB: PDB REMARK 900 NATIVE OXA-48 ENZYME DBREF 4WMC A 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC B 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC C 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC D 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC E 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC F 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC G 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 DBREF 4WMC H 24 265 UNP Q6XEC0 Q6XEC0_KLEPN 24 265 SEQRES 1 A 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 A 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 A 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 A 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 A 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 A 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 A 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 A 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 A 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 A 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 A 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 A 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 A 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 A 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 A 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 A 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 A 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 A 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 A 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 B 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 B 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 B 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 B 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 B 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 B 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 B 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 B 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 B 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 B 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 B 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 B 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 B 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 B 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 B 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 B 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 B 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 B 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 B 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 C 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 C 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 C 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 C 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 C 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 C 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 C 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 C 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 C 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 C 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 C 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 C 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 C 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 C 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 C 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 C 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 C 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 C 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 C 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 D 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 D 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 D 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 D 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE KCX ILE PRO SEQRES 5 D 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 D 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 D 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 D 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 D 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 D 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 D 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 D 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 D 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 D 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 D 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 D 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 D 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 D 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 D 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 E 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 E 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 E 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 E 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE KCX ILE PRO SEQRES 5 E 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 E 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 E 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 E 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 E 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 E 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 E 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 E 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 E 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 E 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 E 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 E 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 E 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 E 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 E 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 F 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 F 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 F 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 F 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 F 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 F 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 F 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 F 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 F 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 F 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 F 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 F 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 F 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 F 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 F 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 F 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 F 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 F 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 F 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 G 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 G 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 G 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 G 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 G 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 G 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 G 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 G 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 G 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 G 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 G 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 G 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 G 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 G 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 G 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 G 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 G 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 G 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 G 242 LEU LYS GLN GLU LYS ILE ILE PRO SEQRES 1 H 242 GLU TRP GLN GLU ASN LYS SER TRP ASN ALA HIS PHE THR SEQRES 2 H 242 GLU HIS LYS SER GLN GLY VAL VAL VAL LEU TRP ASN GLU SEQRES 3 H 242 ASN LYS GLN GLN GLY PHE THR ASN ASN LEU LYS ARG ALA SEQRES 4 H 242 ASN GLN ALA PHE LEU PRO ALA SER THR PHE LYS ILE PRO SEQRES 5 H 242 ASN SER LEU ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP SEQRES 6 H 242 GLU HIS GLN VAL PHE LYS TRP ASP GLY GLN THR ARG ASP SEQRES 7 H 242 ILE ALA THR TRP ASN ARG ASP HIS ASN LEU ILE THR ALA SEQRES 8 H 242 MET LYS TYR SER VAL VAL PRO VAL TYR GLN GLU PHE ALA SEQRES 9 H 242 ARG GLN ILE GLY GLU ALA ARG MET SER LYS MET LEU HIS SEQRES 10 H 242 ALA PHE ASP TYR GLY ASN GLU ASP ILE SER GLY ASN VAL SEQRES 11 H 242 ASP SER PHE TRP LEU ASP GLY GLY ILE ARG ILE SER ALA SEQRES 12 H 242 THR GLU GLN ILE SER PHE LEU ARG LYS LEU TYR HIS ASN SEQRES 13 H 242 LYS LEU HIS VAL SER GLU ARG SER GLN ARG ILE VAL LYS SEQRES 14 H 242 GLN ALA MET LEU THR GLU ALA ASN GLY ASP TYR ILE ILE SEQRES 15 H 242 ARG ALA LYS THR GLY TYR SER THR ARG ILE GLU PRO LYS SEQRES 16 H 242 ILE GLY TRP TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN SEQRES 17 H 242 VAL TRP PHE PHE ALA MET ASN MET ASP MET PRO THR SER SEQRES 18 H 242 ASP GLY LEU GLY LEU ARG GLN ALA ILE THR LYS GLU VAL SEQRES 19 H 242 LEU LYS GLN GLU LYS ILE ILE PRO MODRES 4WMC KCX D 73 LYS MODIFIED RESIDUE MODRES 4WMC KCX E 73 LYS MODIFIED RESIDUE HET KCX D 73 12 HET KCX E 73 12 HET NXL A 301 17 HET CO2 A 302 3 HET NXL B 301 17 HET NXL C 301 17 HET CO2 C 302 3 HET NXL D 301 17 HET NXL E 301 17 HET NXL F 301 17 HET CO2 F 302 3 HET NXL G 301 17 HET NXL H 301 17 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM NXL (2S,5R)-1-FORMYL-5-[(SULFOOXY)AMINO]PIPERIDINE-2- HETNAM 2 NXL CARBOXAMIDE HETNAM CO2 CARBON DIOXIDE HETSYN NXL AVIBACTAM, BOUND FORM; NXL104, BOUND FORM FORMUL 4 KCX 2(C7 H14 N2 O4) FORMUL 9 NXL 8(C7 H13 N3 O6 S) FORMUL 10 CO2 3(C O2) FORMUL 20 HOH *256(H2 O) HELIX 1 AA1 LYS A 29 HIS A 34 5 6 HELIX 2 AA2 LYS A 60 GLN A 64 5 5 HELIX 3 AA3 PRO A 68 THR A 71 5 4 HELIX 4 AA4 PHE A 72 LEU A 83 1 12 HELIX 5 AA5 ILE A 102 ASN A 106 5 5 HELIX 6 AA6 ASN A 110 TYR A 117 1 8 HELIX 7 AA7 VAL A 119 GLY A 131 1 13 HELIX 8 AA8 GLY A 131 PHE A 142 1 12 HELIX 9 AA9 SER A 155 GLY A 160 1 6 HELIX 10 AB1 SER A 165 HIS A 178 1 14 HELIX 11 AB2 SER A 184 MET A 195 1 12 HELIX 12 AB3 THR A 243 LEU A 247 5 5 HELIX 13 AB4 GLY A 248 GLU A 261 1 14 HELIX 14 AB5 TRP B 31 GLU B 37 1 7 HELIX 15 AB6 ASN B 58 ASN B 63 1 6 HELIX 16 AB7 PRO B 68 THR B 71 5 4 HELIX 17 AB8 PHE B 72 LEU B 83 1 12 HELIX 18 AB9 ILE B 102 ASN B 106 5 5 HELIX 19 AC1 ASN B 110 TYR B 117 1 8 HELIX 20 AC2 VAL B 119 GLY B 131 1 13 HELIX 21 AC3 GLY B 131 ASP B 143 1 13 HELIX 22 AC4 PHE B 156 GLY B 160 1 5 HELIX 23 AC5 ALA B 166 HIS B 178 1 13 HELIX 24 AC6 SER B 184 MET B 195 1 12 HELIX 25 AC7 THR B 243 LEU B 247 5 5 HELIX 26 AC8 GLY B 248 GLU B 261 1 14 HELIX 27 AC9 TRP C 31 GLU C 37 1 7 HELIX 28 AD1 ASN C 58 ASN C 63 1 6 HELIX 29 AD2 PRO C 68 THR C 71 5 4 HELIX 30 AD3 PHE C 72 LEU C 83 1 12 HELIX 31 AD4 ILE C 102 ASN C 106 5 5 HELIX 32 AD5 ASN C 110 SER C 118 1 9 HELIX 33 AD6 VAL C 119 ASP C 143 1 25 HELIX 34 AD7 SER C 155 GLY C 160 1 6 HELIX 35 AD8 SER C 165 HIS C 178 1 14 HELIX 36 AD9 SER C 184 MET C 195 1 12 HELIX 37 AE1 THR C 243 LEU C 247 5 5 HELIX 38 AE2 GLY C 248 GLU C 261 1 14 HELIX 39 AE3 LYS D 29 THR D 36 5 8 HELIX 40 AE4 ASN D 58 ASN D 63 1 6 HELIX 41 AE5 PRO D 68 THR D 71 5 4 HELIX 42 AE6 PHE D 72 LEU D 83 1 12 HELIX 43 AE7 ILE D 102 ASN D 106 5 5 HELIX 44 AE8 ASN D 110 TYR D 117 1 8 HELIX 45 AE9 VAL D 119 GLY D 131 1 13 HELIX 46 AF1 GLY D 131 PHE D 142 1 12 HELIX 47 AF2 ALA D 166 HIS D 178 1 13 HELIX 48 AF3 SER D 184 MET D 195 1 12 HELIX 49 AF4 THR D 243 LEU D 247 5 5 HELIX 50 AF5 GLY D 248 LYS D 262 1 15 HELIX 51 AF6 ASN E 28 SER E 30 5 3 HELIX 52 AF7 TRP E 31 HIS E 38 1 8 HELIX 53 AF8 ASN E 58 ASN E 63 1 6 HELIX 54 AF9 PRO E 68 THR E 71 5 4 HELIX 55 AG1 PHE E 72 LEU E 83 1 12 HELIX 56 AG2 ILE E 102 ASN E 106 5 5 HELIX 57 AG3 ASN E 110 TYR E 117 1 8 HELIX 58 AG4 VAL E 119 GLY E 131 1 13 HELIX 59 AG5 GLY E 131 PHE E 142 1 12 HELIX 60 AG6 SER E 155 GLY E 160 1 6 HELIX 61 AG7 SER E 165 HIS E 178 1 14 HELIX 62 AG8 SER E 184 MET E 195 1 12 HELIX 63 AG9 THR E 243 LEU E 247 5 5 HELIX 64 AH1 GLY E 248 GLU E 261 1 14 HELIX 65 AH2 TRP F 31 GLU F 37 1 7 HELIX 66 AH3 ASN F 58 ASN F 63 1 6 HELIX 67 AH4 PRO F 68 THR F 71 5 4 HELIX 68 AH5 PHE F 72 GLY F 84 1 13 HELIX 69 AH6 ASN F 110 TYR F 117 1 8 HELIX 70 AH7 VAL F 119 GLY F 131 1 13 HELIX 71 AH8 GLY F 131 ASP F 143 1 13 HELIX 72 AH9 SER F 155 GLY F 160 1 6 HELIX 73 AI1 ALA F 166 HIS F 178 1 13 HELIX 74 AI2 SER F 184 MET F 195 1 12 HELIX 75 AI3 GLY F 248 GLU F 261 1 14 HELIX 76 AI4 TRP G 31 GLU G 37 1 7 HELIX 77 AI5 ASN G 58 ASN G 63 1 6 HELIX 78 AI6 PRO G 68 THR G 71 5 4 HELIX 79 AI7 PHE G 72 GLY G 84 1 13 HELIX 80 AI8 ILE G 102 ASN G 106 5 5 HELIX 81 AI9 ASN G 110 TYR G 117 1 8 HELIX 82 AJ1 VAL G 119 GLY G 131 1 13 HELIX 83 AJ2 GLY G 131 ASP G 143 1 13 HELIX 84 AJ3 SER G 155 GLY G 160 1 6 HELIX 85 AJ4 ALA G 166 ASN G 179 1 14 HELIX 86 AJ5 SER G 184 MET G 195 1 12 HELIX 87 AJ6 THR G 243 LEU G 247 5 5 HELIX 88 AJ7 GLY G 248 GLU G 261 1 14 HELIX 89 AJ8 LYS H 29 ALA H 33 5 5 HELIX 90 AJ9 ASN H 58 ASN H 63 1 6 HELIX 91 AK1 PRO H 68 THR H 71 5 4 HELIX 92 AK2 PHE H 72 GLY H 84 1 13 HELIX 93 AK3 ASN H 110 SER H 118 1 9 HELIX 94 AK4 VAL H 119 GLY H 131 1 13 HELIX 95 AK5 GLY H 131 PHE H 142 1 12 HELIX 96 AK6 SER H 155 GLY H 160 1 6 HELIX 97 AK7 ALA H 166 HIS H 178 1 13 HELIX 98 AK8 SER H 184 MET H 195 1 12 HELIX 99 AK9 ASP H 245 LEU H 247 5 3 HELIX 100 AL1 GLY H 248 GLU H 261 1 14 SHEET 1 AA1 7 TRP A 25 GLU A 27 0 SHEET 2 AA1 7 GLN A 53 THR A 56 1 O GLY A 54 N GLN A 26 SHEET 3 AA1 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 AA1 7 VAL A 232 ASP A 240 -1 O ALA A 236 N VAL A 45 SHEET 5 AA1 7 ILE A 219 GLU A 227 -1 N TRP A 222 O MET A 237 SHEET 6 AA1 7 ILE A 204 SER A 212 -1 N GLY A 210 O TRP A 221 SHEET 7 AA1 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA2 7 TRP B 25 GLU B 27 0 SHEET 2 AA2 7 GLN B 53 THR B 56 1 O THR B 56 N GLN B 26 SHEET 3 AA2 7 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55 SHEET 4 AA2 7 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 5 AA2 7 ILE B 219 GLU B 227 -1 N VAL B 226 O TRP B 233 SHEET 6 AA2 7 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 7 AA2 7 LEU B 196 ALA B 199 -1 N THR B 197 O ILE B 205 SHEET 1 AA3 2 ALA B 65 PHE B 66 0 SHEET 2 AA3 2 ILE B 164 SER B 165 -1 O ILE B 164 N PHE B 66 SHEET 1 AA4 7 TRP C 25 GLU C 27 0 SHEET 2 AA4 7 GLN C 53 THR C 56 1 O GLY C 54 N GLN C 26 SHEET 3 AA4 7 GLY C 42 ASN C 48 -1 N ASN C 48 O GLN C 53 SHEET 4 AA4 7 VAL C 232 ASP C 240 -1 O ASN C 238 N VAL C 43 SHEET 5 AA4 7 ILE C 219 GLU C 227 -1 N GLY C 220 O MET C 239 SHEET 6 AA4 7 ILE C 204 SER C 212 -1 N ILE C 204 O GLU C 227 SHEET 7 AA4 7 LEU C 196 ALA C 199 -1 N GLU C 198 O ILE C 205 SHEET 1 AA5 7 TRP D 25 GLU D 27 0 SHEET 2 AA5 7 GLN D 53 THR D 56 1 O THR D 56 N GLN D 26 SHEET 3 AA5 7 GLY D 42 ASN D 48 -1 N LEU D 46 O PHE D 55 SHEET 4 AA5 7 VAL D 232 ASP D 240 -1 O ASN D 238 N VAL D 43 SHEET 5 AA5 7 ILE D 219 GLU D 227 -1 N VAL D 226 O TRP D 233 SHEET 6 AA5 7 ILE D 204 SER D 212 -1 N ILE D 204 O GLU D 227 SHEET 7 AA5 7 LEU D 196 ALA D 199 -1 N GLU D 198 O ILE D 205 SHEET 1 AA6 2 ALA D 65 PHE D 66 0 SHEET 2 AA6 2 ILE D 164 SER D 165 -1 O ILE D 164 N PHE D 66 SHEET 1 AA7 6 GLN E 53 THR E 56 0 SHEET 2 AA7 6 VAL E 43 ASN E 48 -1 N ASN E 48 O GLN E 53 SHEET 3 AA7 6 VAL E 232 ASP E 240 -1 O ASN E 238 N VAL E 43 SHEET 4 AA7 6 ILE E 219 GLU E 227 -1 N GLY E 224 O PHE E 235 SHEET 5 AA7 6 ILE E 204 SER E 212 -1 N ILE E 204 O GLU E 227 SHEET 6 AA7 6 LEU E 196 ALA E 199 -1 N GLU E 198 O ILE E 205 SHEET 1 AA8 7 GLN F 26 GLU F 27 0 SHEET 2 AA8 7 GLN F 53 THR F 56 1 O GLY F 54 N GLN F 26 SHEET 3 AA8 7 GLY F 42 ASN F 48 -1 N ASN F 48 O GLN F 53 SHEET 4 AA8 7 VAL F 232 ASP F 240 -1 O ALA F 236 N VAL F 45 SHEET 5 AA8 7 ILE F 219 GLU F 227 -1 N VAL F 226 O TRP F 233 SHEET 6 AA8 7 ILE F 204 SER F 212 -1 N SER F 212 O ILE F 219 SHEET 7 AA8 7 LEU F 196 ALA F 199 -1 N GLU F 198 O ILE F 205 SHEET 1 AA9 2 ALA F 65 PHE F 66 0 SHEET 2 AA9 2 ILE F 164 SER F 165 -1 O ILE F 164 N PHE F 66 SHEET 1 AB1 7 GLN G 26 GLU G 27 0 SHEET 2 AB1 7 GLN G 53 THR G 56 1 O THR G 56 N GLN G 26 SHEET 3 AB1 7 GLY G 42 ASN G 48 -1 N LEU G 46 O PHE G 55 SHEET 4 AB1 7 VAL G 232 ASP G 240 -1 O ASN G 238 N VAL G 43 SHEET 5 AB1 7 ILE G 219 GLU G 227 -1 N GLY G 220 O MET G 239 SHEET 6 AB1 7 ILE G 204 TYR G 211 -1 N ILE G 204 O GLU G 227 SHEET 7 AB1 7 LEU G 196 ALA G 199 -1 N GLU G 198 O ILE G 205 SHEET 1 AB2 2 ALA G 65 PHE G 66 0 SHEET 2 AB2 2 ILE G 164 SER G 165 -1 O ILE G 164 N PHE G 66 SHEET 1 AB3 7 GLN H 26 GLU H 27 0 SHEET 2 AB3 7 GLN H 53 THR H 56 1 O GLY H 54 N GLN H 26 SHEET 3 AB3 7 GLY H 42 ASN H 48 -1 N ASN H 48 O GLN H 53 SHEET 4 AB3 7 VAL H 232 ASP H 240 -1 O ALA H 236 N VAL H 45 SHEET 5 AB3 7 ILE H 219 GLU H 227 -1 N VAL H 226 O TRP H 233 SHEET 6 AB3 7 ILE H 204 SER H 212 -1 N ILE H 204 O GLU H 227 SHEET 7 AB3 7 LEU H 196 ALA H 199 -1 N GLU H 198 O ILE H 205 SHEET 1 AB4 2 ALA H 65 PHE H 66 0 SHEET 2 AB4 2 ILE H 164 SER H 165 -1 O ILE H 164 N PHE H 66 LINK OG SER A 70 CAN NXL A 301 1555 1555 1.48 LINK OG SER B 70 CAN NXL B 301 1555 1555 1.44 LINK OG SER C 70 CAN NXL C 301 1555 1555 1.45 LINK OG SER D 70 CAN NXL D 301 1555 1555 1.45 LINK C PHE D 72 N KCX D 73 1555 1555 1.33 LINK C KCX D 73 N ILE D 74 1555 1555 1.35 LINK OG SER E 70 CAN NXL E 301 1555 1555 1.43 LINK C PHE E 72 N KCX E 73 1555 1555 1.32 LINK C KCX E 73 N ILE E 74 1555 1555 1.35 LINK OG SER F 70 CAN NXL F 301 1555 1555 1.45 LINK OG SER G 70 CAN NXL G 301 1555 1555 1.44 LINK OG SER H 70 CAN NXL H 301 1555 1555 1.44 CISPEP 1 GLU A 216 PRO A 217 0 -1.49 CISPEP 2 GLU B 216 PRO B 217 0 2.94 CISPEP 3 GLU C 216 PRO C 217 0 4.31 CISPEP 4 GLU D 216 PRO D 217 0 -2.08 CISPEP 5 GLU E 216 PRO E 217 0 4.26 CISPEP 6 GLU F 216 PRO F 217 0 2.94 CISPEP 7 ILE F 264 PRO F 265 0 4.53 CISPEP 8 GLU G 216 PRO G 217 0 6.11 CISPEP 9 GLU H 216 PRO H 217 0 -2.85 SITE 1 AC1 10 SER A 70 SER A 118 VAL A 120 LEU A 158 SITE 2 AC1 10 LYS A 208 THR A 209 GLY A 210 TYR A 211 SITE 3 AC1 10 ARG A 250 HOH A 419 SITE 1 AC2 4 LYS A 73 ASN A 76 TYR A 123 TRP A 157 SITE 1 AC3 11 ALA B 69 SER B 70 SER B 118 VAL B 120 SITE 2 AC3 11 LEU B 158 LYS B 208 THR B 209 GLY B 210 SITE 3 AC3 11 TYR B 211 ARG B 250 HOH B 428 SITE 1 AC4 4 LYS C 73 ASN C 76 TRP C 157 HOH C 410 SITE 1 AC5 5 SER F 70 LYS F 73 TYR F 123 TRP F 157 SITE 2 AC5 5 HOH F 417 SITE 1 AC6 15 PRO C 68 ALA C 69 THR C 71 PHE C 72 SITE 2 AC6 15 LYS C 73 SER C 118 VAL C 120 LEU C 158 SITE 3 AC6 15 LYS C 208 THR C 209 GLY C 210 TYR C 211 SITE 4 AC6 15 ARG C 250 HOH C 410 HOH C 411 SITE 1 AC7 13 PRO D 68 ALA D 69 THR D 71 PHE D 72 SITE 2 AC7 13 KCX D 73 SER D 118 VAL D 120 LYS D 208 SITE 3 AC7 13 THR D 209 GLY D 210 TYR D 211 ARG D 250 SITE 4 AC7 13 HOH D 401 SITE 1 AC8 16 PRO E 68 ALA E 69 THR E 71 PHE E 72 SITE 2 AC8 16 KCX E 73 SER E 118 VAL E 120 LEU E 158 SITE 3 AC8 16 LYS E 208 THR E 209 GLY E 210 TYR E 211 SITE 4 AC8 16 THR E 213 ARG E 250 HOH E 428 HOH E 402 SITE 1 AC9 15 PRO F 68 ALA F 69 THR F 71 PHE F 72 SITE 2 AC9 15 LYS F 73 SER F 118 LEU F 158 LYS F 208 SITE 3 AC9 15 THR F 209 GLY F 210 TYR F 211 THR F 213 SITE 4 AC9 15 ARG F 250 CO2 F 302 HOH F 417 SITE 1 AD1 12 PRO G 68 ALA G 69 THR G 71 PHE G 72 SITE 2 AD1 12 LYS G 73 SER G 118 LEU G 158 LYS G 208 SITE 3 AD1 12 THR G 209 GLY G 210 TYR G 211 ARG G 250 SITE 1 AD2 15 PRO H 68 ALA H 69 THR H 71 PHE H 72 SITE 2 AD2 15 LYS H 73 SER H 118 VAL H 120 LEU H 158 SITE 3 AD2 15 LYS H 208 THR H 209 GLY H 210 TYR H 211 SITE 4 AD2 15 ARG H 250 HOH H 420 HOH H 401 CRYST1 63.886 165.465 108.524 90.00 90.39 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015653 0.000000 0.000106 0.00000 SCALE2 0.000000 0.006044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009215 0.00000