HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-OCT-14 4WNO TITLE STRUCTURE OF ULK1 BOUND TO AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE ULK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-283; COMPND 5 SYNONYM: AUTOPHAGY-RELATED PROTEIN 1 HOMOLOG,HATG1,UNC-51-LIKE KINASE COMPND 6 1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ULK1, KIAA0722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, AUTOPHAGY, INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.B.LAZARUS,C.J.NOVOTNY,K.M.SHOKAT REVDAT 4 27-SEP-23 4WNO 1 REMARK REVDAT 3 22-NOV-17 4WNO 1 SOURCE REMARK REVDAT 2 28-JAN-15 4WNO 1 JRNL REVDAT 1 14-JAN-15 4WNO 0 JRNL AUTH M.B.LAZARUS,C.J.NOVOTNY,K.M.SHOKAT JRNL TITL STRUCTURE OF THE HUMAN AUTOPHAGY INITIATING KINASE ULK1 IN JRNL TITL 2 COMPLEX WITH POTENT INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 10 257 2015 JRNL REFN ESSN 1554-8937 JRNL PMID 25551253 JRNL DOI 10.1021/CB500835Z REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.9434 - 3.7596 1.00 2839 135 0.1642 0.1793 REMARK 3 2 3.7596 - 2.9841 1.00 2648 156 0.1686 0.1949 REMARK 3 3 2.9841 - 2.6069 1.00 2629 143 0.1952 0.2300 REMARK 3 4 2.6069 - 2.3686 1.00 2585 143 0.1758 0.2333 REMARK 3 5 2.3686 - 2.1988 1.00 2559 170 0.1764 0.1986 REMARK 3 6 2.1988 - 2.0691 1.00 2592 127 0.1668 0.1959 REMARK 3 7 2.0691 - 1.9655 1.00 2555 133 0.1733 0.1948 REMARK 3 8 1.9655 - 1.8799 1.00 2553 166 0.1735 0.2032 REMARK 3 9 1.8799 - 1.8076 1.00 2542 137 0.1817 0.2089 REMARK 3 10 1.8076 - 1.7452 1.00 2570 124 0.1937 0.2150 REMARK 3 11 1.7452 - 1.6906 1.00 2568 123 0.1990 0.2345 REMARK 3 12 1.6906 - 1.6423 1.00 2536 146 0.1990 0.2249 REMARK 3 13 1.6423 - 1.5991 1.00 2541 117 0.2174 0.2604 REMARK 3 14 1.5991 - 1.5600 1.00 2563 121 0.2371 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2301 REMARK 3 ANGLE : 1.235 3105 REMARK 3 CHIRALITY : 0.045 339 REMARK 3 PLANARITY : 0.006 396 REMARK 3 DIHEDRAL : 13.397 866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:22) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6103 -51.0223 -8.2042 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.2430 REMARK 3 T33: 0.2714 T12: 0.0191 REMARK 3 T13: -0.0359 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 9.1569 L22: 5.0120 REMARK 3 L33: 5.9550 L12: 3.3999 REMARK 3 L13: -1.4473 L23: -3.0944 REMARK 3 S TENSOR REMARK 3 S11: 0.2552 S12: -0.4946 S13: -0.6378 REMARK 3 S21: 0.3995 S22: -0.4321 S23: -0.9218 REMARK 3 S31: 0.1872 S32: 0.8890 S33: 0.1427 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 23:49) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8910 -46.6663 -9.8568 REMARK 3 T TENSOR REMARK 3 T11: 0.1302 T22: 0.1750 REMARK 3 T33: 0.1289 T12: 0.0346 REMARK 3 T13: 0.0163 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.3929 L22: 5.7251 REMARK 3 L33: 5.6455 L12: 0.2314 REMARK 3 L13: 0.0169 L23: 2.4036 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: -0.0745 S13: -0.1082 REMARK 3 S21: -0.0738 S22: -0.0502 S23: -0.3894 REMARK 3 S31: 0.2225 S32: 0.6314 S33: -0.0440 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 50:76) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9016 -39.5680 -6.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.0729 REMARK 3 T33: 0.1283 T12: 0.0115 REMARK 3 T13: 0.0252 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.2004 L22: 1.8754 REMARK 3 L33: 9.2500 L12: 0.0785 REMARK 3 L13: 2.3074 L23: 0.7596 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: -0.2620 S13: -0.0302 REMARK 3 S21: 0.2844 S22: -0.0676 S23: 0.0375 REMARK 3 S31: -0.0462 S32: -0.2451 S33: 0.1697 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 77:106) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2702 -42.0609 -12.6522 REMARK 3 T TENSOR REMARK 3 T11: 0.0873 T22: 0.0937 REMARK 3 T33: 0.0884 T12: 0.0189 REMARK 3 T13: 0.0110 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.0718 L22: 1.5201 REMARK 3 L33: 1.6045 L12: 1.0922 REMARK 3 L13: -0.9027 L23: -1.2206 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.1244 S13: 0.0002 REMARK 3 S21: 0.0969 S22: -0.0578 S23: -0.0671 REMARK 3 S31: 0.0571 S32: 0.0945 S33: 0.0466 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 107:125) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0674 -29.0989 -30.1656 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.0569 REMARK 3 T33: 0.0756 T12: 0.0291 REMARK 3 T13: 0.0083 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 6.6302 L22: 2.9204 REMARK 3 L33: 3.3288 L12: 2.2936 REMARK 3 L13: -3.6414 L23: -2.0905 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.1358 S13: -0.0107 REMARK 3 S21: -0.0939 S22: -0.0004 S23: -0.0818 REMARK 3 S31: 0.0294 S32: -0.0247 S33: -0.0588 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 126:160) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2430 -35.6775 -22.0367 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.0644 REMARK 3 T33: 0.0895 T12: -0.0042 REMARK 3 T13: 0.0171 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.4440 L22: 1.9680 REMARK 3 L33: 2.2172 L12: -1.2224 REMARK 3 L13: -1.4697 L23: 1.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.1610 S12: 0.2064 S13: 0.0179 REMARK 3 S21: -0.2432 S22: -0.0278 S23: -0.1681 REMARK 3 S31: -0.1694 S32: 0.0768 S33: -0.1172 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 161:217) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3487 -24.1397 -12.2699 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.0798 REMARK 3 T33: 0.0890 T12: -0.0023 REMARK 3 T13: -0.0102 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.8425 L22: 0.9340 REMARK 3 L33: 2.0764 L12: -0.0853 REMARK 3 L13: -1.4854 L23: -0.3092 REMARK 3 S TENSOR REMARK 3 S11: 0.1473 S12: -0.0818 S13: 0.1847 REMARK 3 S21: 0.0672 S22: -0.0738 S23: -0.0476 REMARK 3 S31: -0.2129 S32: 0.0599 S33: -0.0660 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 218:225) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5177 -13.8370 -16.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.3985 T22: 0.6649 REMARK 3 T33: 0.4013 T12: -0.0398 REMARK 3 T13: -0.0275 T23: -0.1290 REMARK 3 L TENSOR REMARK 3 L11: 0.0269 L22: 0.2686 REMARK 3 L33: 8.7755 L12: 0.0878 REMARK 3 L13: 0.4985 L23: 1.5342 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -1.0973 S13: 1.0349 REMARK 3 S21: 0.8148 S22: 0.0557 S23: -0.6990 REMARK 3 S31: -0.4728 S32: 1.8073 S33: -0.0511 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 226:241) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9551 -8.7823 -11.7923 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.2655 REMARK 3 T33: 0.5357 T12: -0.1152 REMARK 3 T13: 0.1004 T23: -0.0877 REMARK 3 L TENSOR REMARK 3 L11: 5.0048 L22: 7.5125 REMARK 3 L33: 9.7400 L12: -1.8887 REMARK 3 L13: 0.4267 L23: 0.6272 REMARK 3 S TENSOR REMARK 3 S11: 0.0888 S12: -0.5895 S13: 1.0357 REMARK 3 S21: 0.6643 S22: -0.1696 S23: -0.2745 REMARK 3 S31: -1.0637 S32: 0.0235 S33: 0.0596 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 242:280) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1476 -18.8960 -26.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.1079 T22: 0.0733 REMARK 3 T33: 0.1271 T12: 0.0436 REMARK 3 T13: 0.0103 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 4.5099 L22: 2.8969 REMARK 3 L33: 4.4485 L12: 1.6104 REMARK 3 L13: -1.1027 L23: -1.4051 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: 0.0156 S13: 0.1187 REMARK 3 S21: 0.0067 S22: 0.0547 S23: 0.1513 REMARK 3 S31: 0.0025 S32: -0.2723 S33: -0.0449 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99995 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38276 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 58.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4B6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.55 M SODIUM MALONATE PH 7.0, 0.35 M REMARK 280 SODIUM MALONATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.11500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.11500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.11500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.11500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 576 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 SER A 281 REMARK 465 PRO A 282 REMARK 465 SER A 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 624 O HOH A 659 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 109 163.47 75.85 REMARK 500 ARG A 137 -2.07 80.06 REMARK 500 ASP A 165 74.60 64.81 REMARK 500 ASP A 199 -153.67 -135.19 REMARK 500 LEU A 259 39.51 -95.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3RF A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WNP RELATED DB: PDB DBREF 4WNO A 1 283 UNP O75385 ULK1_HUMAN 1 283 SEQADV 4WNO GLY A -3 UNP O75385 EXPRESSION TAG SEQADV 4WNO GLY A -2 UNP O75385 EXPRESSION TAG SEQADV 4WNO GLY A -1 UNP O75385 EXPRESSION TAG SEQADV 4WNO SER A 0 UNP O75385 EXPRESSION TAG SEQADV 4WNO ALA A 37 UNP O75385 GLU 37 ENGINEERED MUTATION SEQADV 4WNO ALA A 38 UNP O75385 LYS 38 ENGINEERED MUTATION SEQRES 1 A 287 GLY GLY GLY SER MET GLU PRO GLY ARG GLY GLY THR GLU SEQRES 2 A 287 THR VAL GLY LYS PHE GLU PHE SER ARG LYS ASP LEU ILE SEQRES 3 A 287 GLY HIS GLY ALA PHE ALA VAL VAL PHE LYS GLY ARG HIS SEQRES 4 A 287 ARG ALA ALA HIS ASP LEU GLU VAL ALA VAL LYS CYS ILE SEQRES 5 A 287 ASN LYS LYS ASN LEU ALA LYS SER GLN THR LEU LEU GLY SEQRES 6 A 287 LYS GLU ILE LYS ILE LEU LYS GLU LEU LYS HIS GLU ASN SEQRES 7 A 287 ILE VAL ALA LEU TYR ASP PHE GLN GLU MET ALA ASN SER SEQRES 8 A 287 VAL TYR LEU VAL MET GLU TYR CYS ASN GLY GLY ASP LEU SEQRES 9 A 287 ALA ASP TYR LEU HIS ALA MET ARG THR LEU SER GLU ASP SEQRES 10 A 287 THR ILE ARG LEU PHE LEU GLN GLN ILE ALA GLY ALA MET SEQRES 11 A 287 ARG LEU LEU HIS SER LYS GLY ILE ILE HIS ARG ASP LEU SEQRES 12 A 287 LYS PRO GLN ASN ILE LEU LEU SER ASN PRO ALA GLY ARG SEQRES 13 A 287 ARG ALA ASN PRO ASN SER ILE ARG VAL LYS ILE ALA ASP SEQRES 14 A 287 PHE GLY PHE ALA ARG TYR LEU GLN SER ASN MET MET ALA SEQRES 15 A 287 ALA TPO LEU CYS GLY SER PRO MET TYR MET ALA PRO GLU SEQRES 16 A 287 VAL ILE MET SER GLN HIS TYR ASP GLY LYS ALA ASP LEU SEQRES 17 A 287 TRP SER ILE GLY THR ILE VAL TYR GLN CYS LEU THR GLY SEQRES 18 A 287 LYS ALA PRO PHE GLN ALA SER SER PRO GLN ASP LEU ARG SEQRES 19 A 287 LEU PHE TYR GLU LYS ASN LYS THR LEU VAL PRO THR ILE SEQRES 20 A 287 PRO ARG GLU THR SER ALA PRO LEU ARG GLN LEU LEU LEU SEQRES 21 A 287 ALA LEU LEU GLN ARG ASN HIS LYS ASP ARG MET ASP PHE SEQRES 22 A 287 ASP GLU PHE PHE HIS HIS PRO PHE LEU ASP ALA SER PRO SEQRES 23 A 287 SER MODRES 4WNO TPO A 180 THR MODIFIED RESIDUE HET TPO A 180 11 HET 3RF A 401 46 HETNAM TPO PHOSPHOTHREONINE HETNAM 3RF N~2~-(4-AMINOPHENYL)-N~4~-(5-CYCLOPROPYL-1H-PYRAZOL-3- HETNAM 2 3RF YL)QUINAZOLINE-2,4-DIAMINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 3RF C20 H19 N7 FORMUL 3 HOH *161(H2 O) HELIX 1 AA1 ASN A 49 LYS A 51 5 3 HELIX 2 AA2 ASN A 52 LYS A 68 1 17 HELIX 3 AA3 ASP A 99 MET A 107 1 9 HELIX 4 AA4 SER A 111 GLY A 133 1 23 HELIX 5 AA5 LYS A 140 GLN A 142 5 3 HELIX 6 AA6 ASN A 155 ILE A 159 5 5 HELIX 7 AA7 ALA A 189 MET A 194 1 6 HELIX 8 AA8 GLY A 200 GLY A 217 1 18 HELIX 9 AA9 SER A 225 ASN A 236 1 12 HELIX 10 AB1 SER A 248 LEU A 259 1 12 HELIX 11 AB2 ASP A 268 HIS A 274 1 7 HELIX 12 AB3 HIS A 275 ASP A 279 5 5 SHEET 1 AA1 6 GLU A 9 VAL A 11 0 SHEET 2 AA1 6 PHE A 14 HIS A 24 -1 O PHE A 16 N GLU A 9 SHEET 3 AA1 6 VAL A 29 HIS A 35 -1 O VAL A 30 N GLY A 23 SHEET 4 AA1 6 GLU A 42 CYS A 47 -1 O VAL A 45 N PHE A 31 SHEET 5 AA1 6 VAL A 88 GLU A 93 -1 O MET A 92 N ALA A 44 SHEET 6 AA1 6 LEU A 78 GLU A 83 -1 N ASP A 80 O VAL A 91 SHEET 1 AA2 2 ILE A 134 ILE A 135 0 SHEET 2 AA2 2 ARG A 170 TYR A 171 -1 O ARG A 170 N ILE A 135 SHEET 1 AA3 2 ILE A 144 SER A 147 0 SHEET 2 AA3 2 ARG A 160 ILE A 163 -1 O LYS A 162 N LEU A 145 LINK C ALA A 179 N TPO A 180 1555 1555 1.42 LINK C TPO A 180 N LEU A 181 1555 1555 1.42 CISPEP 1 ASP A 279 ALA A 280 0 9.59 SITE 1 AC1 13 ILE A 22 VAL A 30 ALA A 44 GLU A 93 SITE 2 AC1 13 TYR A 94 CYS A 95 GLY A 98 ASP A 102 SITE 3 AC1 13 HIS A 105 LEU A 145 ASP A 165 HOH A 540 SITE 4 AC1 13 HOH A 553 CRYST1 66.780 66.780 116.230 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014974 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008604 0.00000