HEADER SIGNALING PROTEIN 14-OCT-14 4WNR TITLE STRUCTURE OF METHANOSARCINA BARKERI ROCO2 ROCCORDC BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-RICH-REPEAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 287-629; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA BARKERI; SOURCE 3 ORGANISM_TAXID: 269797; SOURCE 4 STRAIN: FUSARO / DSM 804; SOURCE 5 GENE: MBAR_A2306; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ROCO PROTEINS, GAD, SMALL G-PROTEIN, COR, PARKINSON'S DISEASE, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.TERHEYDEN REVDAT 3 10-JAN-24 4WNR 1 LINK REVDAT 2 11-FEB-15 4WNR 1 JRNL REVDAT 1 05-NOV-14 4WNR 0 JRNL AUTH S.TERHEYDEN,F.Y.HO,B.K.GILSBACH,A.WITTINGHOFER,A.KORTHOLT JRNL TITL REVISITING THE ROCO G-PROTEIN CYCLE. JRNL REF BIOCHEM.J. V. 465 139 2015 JRNL REFN ESSN 1470-8728 JRNL PMID 25317655 JRNL DOI 10.1042/BJ20141095 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 910 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1234 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.99000 REMARK 3 B12 (A**2) : -0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.455 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.313 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2720 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2597 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3664 ; 0.769 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5999 ; 0.658 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 4.427 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;33.083 ;24.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;12.513 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 7.235 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2981 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 21.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79500 REMARK 200 FOR SHELL : 2.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3DPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, SODIUMSULFATE, LITHIUMSULFATE, REMARK 280 PEG 400, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.36667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 148.73333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.55000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 185.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.18333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.36667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 148.73333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 185.91667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 111.55000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.18333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 802 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 281 REMARK 465 ALA A 282 REMARK 465 MET A 283 REMARK 465 GLY A 284 REMARK 465 GLY A 285 REMARK 465 SER A 286 REMARK 465 GLY A 287 REMARK 465 ASN A 288 REMARK 465 PRO A 289 REMARK 465 LEU A 290 REMARK 465 GLU A 291 REMARK 465 LYS A 292 REMARK 465 PRO A 293 REMARK 465 PRO A 294 REMARK 465 ILE A 295 REMARK 465 GLU A 296 REMARK 465 ILE A 297 REMARK 465 VAL A 298 REMARK 465 LYS A 299 REMARK 465 GLN A 300 REMARK 465 GLY A 301 REMARK 465 ARG A 302 REMARK 465 GLU A 303 REMARK 465 ALA A 304 REMARK 465 VAL A 305 REMARK 465 ILE A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 307 CG OD1 ND2 REMARK 470 TYR A 308 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 309 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 GLN A 471 CG CD OE1 NE2 REMARK 470 ASN A 519 CG OD1 ND2 REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 LYS A 591 CG CD CE NZ REMARK 470 GLU A 592 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 310 55.51 -113.98 REMARK 500 SER A 311 43.40 -143.08 REMARK 500 LYS A 366 -127.60 54.75 REMARK 500 GLU A 407 72.56 54.40 REMARK 500 LYS A 590 -70.00 -74.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 335 OG1 REMARK 620 2 GDP A 701 O2B 72.7 REMARK 620 3 HOH A 806 O 79.2 143.4 REMARK 620 4 HOH A 807 O 66.7 69.3 78.2 REMARK 620 5 HOH A 808 O 70.3 105.2 86.5 136.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 705 DBREF 4WNR A 287 629 UNP Q46A62 Q46A62_METBF 287 629 SEQADV 4WNR GLY A 281 UNP Q46A62 EXPRESSION TAG SEQADV 4WNR ALA A 282 UNP Q46A62 EXPRESSION TAG SEQADV 4WNR MET A 283 UNP Q46A62 EXPRESSION TAG SEQADV 4WNR GLY A 284 UNP Q46A62 EXPRESSION TAG SEQADV 4WNR GLY A 285 UNP Q46A62 EXPRESSION TAG SEQADV 4WNR SER A 286 UNP Q46A62 EXPRESSION TAG SEQRES 1 A 349 GLY ALA MET GLY GLY SER GLY ASN PRO LEU GLU LYS PRO SEQRES 2 A 349 PRO ILE GLU ILE VAL LYS GLN GLY ARG GLU ALA VAL ILE SEQRES 3 A 349 ASN TYR PHE LYS SER LEU GLU GLY GLU LYS LYS PRO LEU SEQRES 4 A 349 ASN GLU VAL LYS VAL LEU LEU VAL GLY ASP GLY GLU ALA SEQRES 5 A 349 GLY LYS THR SER LEU LEU LYS ARG LEU LEU GLY GLU GLY SEQRES 6 A 349 PHE ASP GLY ASN GLU HIS GLN THR GLN GLY ILE ASN ILE SEQRES 7 A 349 LYS LYS TRP GLY PHE LYS ASP LYS ASP LYS GLU ILE LYS SEQRES 8 A 349 VAL ASN PHE TRP ASP PHE GLY GLY GLN GLU ILE MET HIS SEQRES 9 A 349 ALA THR HIS GLN PHE PHE LEU SER LYS ARG SER LEU TYR SEQRES 10 A 349 ILE LEU VAL LEU ASP SER ARG ARG ASP GLU LYS ALA GLU SEQRES 11 A 349 TYR TRP LEU LYS HIS ILE ARG SER PHE GLY GLY ASP SER SEQRES 12 A 349 PRO VAL LEU VAL ALA LEU ASN LYS ILE ASP GLU ASN PRO SEQRES 13 A 349 SER PHE GLU LEU ASN ARG LYS PHE LEU GLN GLU LYS TYR SEQRES 14 A 349 PRO SER ILE LYS GLY PHE PHE ARG ILE SER CYS LYS GLU SEQRES 15 A 349 ASP ARG GLY ILE GLU GLY PHE SER GLN LYS LEU LYS LYS SEQRES 16 A 349 GLU LEU LEU LYS VAL GLU HIS MET GLN ILE GLU TRP ALA SEQRES 17 A 349 LYS SER TRP PHE GLU VAL LYS THR LYS LEU GLU LYS MET SEQRES 18 A 349 SER CYS ASN PHE ILE THR TYR GLU GLU TYR ARG ASN ILE SEQRES 19 A 349 CYS LEU GLU GLU ASN VAL GLY ASP LYS SER SER GLN ASN SEQRES 20 A 349 THR LEU VAL ASP PHE LEU ASN ASP LEU GLY VAL ILE VAL SEQRES 21 A 349 HIS PHE LYS ASP ILE SER LEU LEU ASP THR HIS VAL LEU SEQRES 22 A 349 GLU PRO LYS TRP ILE THR GLU GLY VAL TYR LYS ILE ILE SEQRES 23 A 349 ASN SER GLU ILE LEU ALA LYS LYS LYS GLY VAL LEU ARG SEQRES 24 A 349 PHE SER MET LEU ASP GLU ILE LEU GLU GLN LYS LYS GLU SEQRES 25 A 349 GLY ASP TYR TYR TYR PRO PRO GLU ARG TYR GLY TYR ILE SEQRES 26 A 349 ILE ASN LEU MET LYS LYS PHE GLU LEU CYS TYR SER ILE SEQRES 27 A 349 ASP GLU GLU THR VAL LEU LEU PRO ASP LEU LEU HET GDP A 701 28 HET MG A 702 1 HET GOL A 703 6 HET SO4 A 704 5 HET SO4 A 705 5 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *19(H2 O) HELIX 1 AA1 GLY A 333 GLY A 343 1 11 HELIX 2 AA2 GLY A 378 HIS A 384 1 7 HELIX 3 AA3 ALA A 385 LEU A 391 5 7 HELIX 4 AA4 LYS A 408 GLY A 421 1 14 HELIX 5 AA5 ASN A 441 TYR A 449 1 9 HELIX 6 AA6 GLY A 465 LYS A 479 1 15 HELIX 7 AA7 VAL A 480 GLN A 484 5 5 HELIX 8 AA8 LYS A 489 MET A 501 1 13 HELIX 9 AA9 THR A 507 GLU A 518 1 12 HELIX 10 AB1 ASP A 522 LEU A 536 1 15 HELIX 11 AB2 GLU A 554 ASN A 567 1 14 HELIX 12 AB3 SER A 568 LYS A 573 1 6 HELIX 13 AB4 MET A 582 LEU A 587 1 6 HELIX 14 AB5 PRO A 598 GLU A 600 5 3 HELIX 15 AB6 ARG A 601 PHE A 612 1 12 HELIX 16 AB7 PRO A 626 LEU A 629 5 4 SHEET 1 AA1 2 LYS A 316 PRO A 318 0 SHEET 2 AA1 2 GLU A 486 ALA A 488 -1 O TRP A 487 N LYS A 317 SHEET 1 AA2 6 ASN A 357 ASP A 365 0 SHEET 2 AA2 6 LYS A 368 ASP A 376 -1 O VAL A 372 N TRP A 361 SHEET 3 AA2 6 GLU A 321 VAL A 327 1 N VAL A 324 O TRP A 375 SHEET 4 AA2 6 LEU A 396 LEU A 401 1 O LEU A 396 N LEU A 325 SHEET 5 AA2 6 VAL A 425 LEU A 429 1 O ALA A 428 N LEU A 399 SHEET 6 AA2 6 ILE A 452 ARG A 457 1 O LYS A 453 N VAL A 425 SHEET 1 AA3 2 PHE A 505 ILE A 506 0 SHEET 2 AA3 2 HIS A 551 VAL A 552 -1 O HIS A 551 N ILE A 506 SHEET 1 AA4 3 VAL A 577 ARG A 579 0 SHEET 2 AA4 3 THR A 622 LEU A 624 -1 O VAL A 623 N LEU A 578 SHEET 3 AA4 3 TYR A 616 SER A 617 -1 N TYR A 616 O LEU A 624 SSBOND 1 SO4 A 704 SO4 A 704 1555 8555 1.93 LINK OG1 THR A 335 MG MG A 702 1555 1555 2.54 LINK O2B GDP A 701 MG MG A 702 1555 1555 2.25 LINK MG MG A 702 O HOH A 806 1555 1555 2.15 LINK MG MG A 702 O HOH A 807 1555 1555 2.51 LINK MG MG A 702 O HOH A 808 1555 1555 2.10 SITE 1 AC1 21 GLY A 330 GLU A 331 ALA A 332 GLY A 333 SITE 2 AC1 21 LYS A 334 THR A 335 SER A 336 PHE A 346 SITE 3 AC1 21 GLY A 348 GLU A 350 HIS A 351 ASN A 430 SITE 4 AC1 21 LYS A 431 ASP A 433 GLU A 434 SER A 459 SITE 5 AC1 21 CYS A 460 LYS A 461 MG A 702 HOH A 807 SITE 6 AC1 21 HOH A 808 SITE 1 AC2 5 THR A 335 GDP A 701 HOH A 806 HOH A 807 SITE 2 AC2 5 HOH A 808 SITE 1 AC3 3 LYS A 414 ARG A 417 LYS A 448 SITE 1 AC4 2 ARG A 442 ARG A 457 SITE 1 AC5 5 PRO A 436 ARG A 457 ARG A 464 LYS A 472 SITE 2 AC5 5 LYS A 475 CRYST1 109.360 109.360 223.100 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009144 0.005279 0.000000 0.00000 SCALE2 0.000000 0.010559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004482 0.00000