HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 14-OCT-14 4WNT TITLE HUMAN CYTOCHROME P450 2D6 AJMALICINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 2D6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-497; COMPND 5 SYNONYM: CYPIID6,CYTOCHROME P450-DB1,DEBRISOQUINE 4-HYDROXYLASE; COMPND 6 EC: 1.14.14.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYP2D6, CYP2DL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCWORI KEYWDS CYP2D6, P450 2D6, CYTOCHROME P450, MONOOXYGENASE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.WANG,C.D.STOUT,E.F.JOHNSON REVDAT 7 27-SEP-23 4WNT 1 REMARK LINK REVDAT 6 25-DEC-19 4WNT 1 REMARK REVDAT 5 22-NOV-17 4WNT 1 REMARK REVDAT 4 13-SEP-17 4WNT 1 SOURCE JRNL REMARK REVDAT 3 04-MAR-15 4WNT 1 JRNL REVDAT 2 21-JAN-15 4WNT 1 JRNL REVDAT 1 14-JAN-15 4WNT 0 JRNL AUTH A.WANG,C.D.STOUT,Q.ZHANG,E.F.JOHNSON JRNL TITL CONTRIBUTIONS OF IONIC INTERACTIONS AND PROTEIN DYNAMICS TO JRNL TITL 2 CYTOCHROME P450 2D6 (CYP2D6) SUBSTRATE AND INHIBITOR JRNL TITL 3 BINDING. JRNL REF J.BIOL.CHEM. V. 290 5092 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25555909 JRNL DOI 10.1074/JBC.M114.627661 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 42897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2137 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6670 - 6.4057 0.98 2952 147 0.1547 0.1882 REMARK 3 2 6.4057 - 5.0871 0.97 2793 145 0.1943 0.2306 REMARK 3 3 5.0871 - 4.4448 0.98 2741 142 0.1599 0.2151 REMARK 3 4 4.4448 - 4.0388 0.99 2781 138 0.1645 0.1848 REMARK 3 5 4.0388 - 3.7495 0.99 2774 127 0.1802 0.2247 REMARK 3 6 3.7495 - 3.5285 0.99 2742 148 0.2009 0.2371 REMARK 3 7 3.5285 - 3.3519 0.99 2723 152 0.1941 0.2408 REMARK 3 8 3.3519 - 3.2060 0.98 2712 148 0.2064 0.2862 REMARK 3 9 3.2060 - 3.0826 0.97 2688 133 0.2222 0.2616 REMARK 3 10 3.0826 - 2.9763 0.97 2684 147 0.2315 0.2864 REMARK 3 11 2.9763 - 2.8832 0.97 2630 140 0.2318 0.2887 REMARK 3 12 2.8832 - 2.8008 0.97 2674 148 0.2319 0.2926 REMARK 3 13 2.8008 - 2.7271 0.97 2601 146 0.2592 0.3282 REMARK 3 14 2.7271 - 2.6606 0.97 2679 134 0.2563 0.3228 REMARK 3 15 2.6606 - 2.6001 0.96 2586 142 0.2439 0.2581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7583 REMARK 3 ANGLE : 1.135 10327 REMARK 3 CHIRALITY : 0.041 1116 REMARK 3 PLANARITY : 0.006 1378 REMARK 3 DIHEDRAL : 14.194 2818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 31 THROUGH 497) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7834 27.2494 -71.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.2977 REMARK 3 T33: 0.3223 T12: 0.0051 REMARK 3 T13: -0.0159 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 1.3165 L22: 1.3816 REMARK 3 L33: 2.9958 L12: 0.3016 REMARK 3 L13: -0.2869 L23: -0.6738 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: 0.0185 S13: 0.1448 REMARK 3 S21: 0.1765 S22: -0.1097 S23: -0.0825 REMARK 3 S31: -0.1738 S32: 0.2552 S33: 0.1176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 31 THROUGH 497) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1967 29.0975 -24.0650 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.1823 REMARK 3 T33: 0.3140 T12: 0.0005 REMARK 3 T13: 0.0051 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.8025 L22: 1.1651 REMARK 3 L33: 3.2220 L12: 0.2164 REMARK 3 L13: -0.4293 L23: 0.0588 REMARK 3 S TENSOR REMARK 3 S11: -0.1806 S12: 0.1151 S13: 0.0397 REMARK 3 S21: -0.1822 S22: 0.0400 S23: -0.0161 REMARK 3 S31: -0.0002 S32: -0.1404 S33: 0.1012 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4WNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204151. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.097173 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL REMARK 200 OPTICS : RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42976 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.012 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3TDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM ACETATE, SODIUM REMARK 280 CACODYLATE, POTASSIUM PHOSPHATE, SODIUM CHLORIDE, ZINC CHLORIDE, REMARK 280 GLYCEROL, BETA-MERCAPTOETHANOL, THIORIDAZINE, HEGA-10, FACIAL REMARK 280 AMPHIPHILE 231_CHOL. AJMALICINE WAS ADDED TO THE MOTHER LIQUOR REMARK 280 AFTER CRYSTALLIZATION OF THE P450 2D6 THIORDIDAZINE COMPLEX., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.65500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.65500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 604 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 23 REMARK 465 ALA A 24 REMARK 465 LYS A 25 REMARK 465 LYS A 26 REMARK 465 THR A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LYS A 30 REMARK 465 LEU A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 LEU A 43 REMARK 465 GLY A 44 REMARK 465 ASN A 45 REMARK 465 LEU A 46 REMARK 465 LEU A 47 REMARK 465 HIS A 48 REMARK 465 VAL A 49 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 MET B 23 REMARK 465 ALA B 24 REMARK 465 LYS B 25 REMARK 465 LYS B 26 REMARK 465 THR B 27 REMARK 465 SER B 28 REMARK 465 SER B 29 REMARK 465 LYS B 30 REMARK 465 LEU B 40 REMARK 465 PRO B 41 REMARK 465 GLY B 42 REMARK 465 LEU B 43 REMARK 465 GLY B 44 REMARK 465 ASN B 45 REMARK 465 LEU B 46 REMARK 465 LEU B 47 REMARK 465 HIS B 48 REMARK 465 VAL B 49 REMARK 465 ASP B 50 REMARK 465 PHE B 51 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -121.21 59.59 REMARK 500 VAL A 92 -62.33 -109.99 REMARK 500 SER A 168 -108.78 57.16 REMARK 500 LEU A 241 55.88 -117.09 REMARK 500 MET A 353 65.27 -118.96 REMARK 500 LEU A 434 50.86 -119.84 REMARK 500 SER A 437 -158.58 63.65 REMARK 500 CYS A 443 127.52 -39.59 REMARK 500 ALA A 482 -125.88 -89.95 REMARK 500 ALA B 74 -125.85 61.35 REMARK 500 SER B 168 -112.06 51.34 REMARK 500 MET B 307 -67.46 -127.34 REMARK 500 VAL B 408 -52.82 -128.83 REMARK 500 HIS B 416 82.99 -150.39 REMARK 500 ASP B 422 -162.34 -79.97 REMARK 500 LEU B 434 50.62 -116.39 REMARK 500 SER B 437 -156.95 59.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 258 NE2 REMARK 620 2 ASP A 270 OD2 108.1 REMARK 620 3 GLU A 273 OE1 129.4 90.3 REMARK 620 4 GLU A 287 OE2 65.7 76.9 73.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 422 OD2 REMARK 620 2 ASP A 422 OD2 0.0 REMARK 620 3 HIS A 426 ND1 113.4 113.4 REMARK 620 4 HIS A 426 ND1 113.4 113.4 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 443 SG REMARK 620 2 HEM A 601 NA 100.9 REMARK 620 3 HEM A 601 NB 86.8 91.2 REMARK 620 4 HEM A 601 NC 89.7 169.3 90.3 REMARK 620 5 HEM A 601 ND 102.0 89.1 170.9 87.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 258 NE2 REMARK 620 2 ASP B 270 OD2 107.4 REMARK 620 3 GLU B 273 OE2 120.0 108.8 REMARK 620 4 GLU B 287 OE2 68.9 82.0 70.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 443 SG REMARK 620 2 HEM B 601 NA 102.8 REMARK 620 3 HEM B 601 NB 89.6 91.2 REMARK 620 4 HEM B 601 NC 90.7 166.5 87.5 REMARK 620 5 HEM B 601 ND 103.6 88.3 166.7 89.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AJN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AJN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TBG RELATED DB: PDB REMARK 900 3TBG CONTAINS THE SAME PROTEIN IN AN OPEN CONFORMATION COMPLEXED REMARK 900 WITH 2 MOLECULES OF THIORIDAZINE REMARK 900 RELATED ID: 3TDA RELATED DB: PDB REMARK 900 3TDA CONTAINS THE SAME PROTEIN COMPLEXED WITH PRINOMASTAT REMARK 900 RELATED ID: 3QM4 RELATED DB: PDB REMARK 900 3QM4 CONTAINS THE SAME PROTEIN IN CLOSED CONFORMATION COMPLEXED REMARK 900 WITH PRINOMASTAT REMARK 900 RELATED ID: 2F9Q RELATED DB: PDB REMARK 900 2F9Q CONTAINS THE V374M VARIANT OF THE SAME PROTEIN IN AN OPEN REMARK 900 CONFORMATION REMARK 900 RELATED ID: 4WNW RELATED DB: PDB REMARK 900 RELATED ID: 4WNU RELATED DB: PDB REMARK 900 RELATED ID: 4WNV RELATED DB: PDB DBREF 4WNT A 34 497 UNP P10635 CP2D6_HUMAN 34 497 DBREF 4WNT B 34 497 UNP P10635 CP2D6_HUMAN 34 497 SEQADV 4WNT MET A 23 UNP P10635 INITIATING METHIONINE SEQADV 4WNT ALA A 24 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS A 25 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS A 26 UNP P10635 EXPRESSION TAG SEQADV 4WNT THR A 27 UNP P10635 EXPRESSION TAG SEQADV 4WNT SER A 28 UNP P10635 EXPRESSION TAG SEQADV 4WNT SER A 29 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS A 30 UNP P10635 EXPRESSION TAG SEQADV 4WNT GLY A 31 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS A 32 UNP P10635 EXPRESSION TAG SEQADV 4WNT LEU A 33 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS A 498 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS A 499 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS A 500 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS A 501 UNP P10635 EXPRESSION TAG SEQADV 4WNT MET B 23 UNP P10635 INITIATING METHIONINE SEQADV 4WNT ALA B 24 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS B 25 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS B 26 UNP P10635 EXPRESSION TAG SEQADV 4WNT THR B 27 UNP P10635 EXPRESSION TAG SEQADV 4WNT SER B 28 UNP P10635 EXPRESSION TAG SEQADV 4WNT SER B 29 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS B 30 UNP P10635 EXPRESSION TAG SEQADV 4WNT GLY B 31 UNP P10635 EXPRESSION TAG SEQADV 4WNT LYS B 32 UNP P10635 EXPRESSION TAG SEQADV 4WNT LEU B 33 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS B 498 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS B 499 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS B 500 UNP P10635 EXPRESSION TAG SEQADV 4WNT HIS B 501 UNP P10635 EXPRESSION TAG SEQRES 1 A 479 MET ALA LYS LYS THR SER SER LYS GLY LYS LEU PRO PRO SEQRES 2 A 479 GLY PRO LEU PRO LEU PRO GLY LEU GLY ASN LEU LEU HIS SEQRES 3 A 479 VAL ASP PHE GLN ASN THR PRO TYR CYS PHE ASP GLN LEU SEQRES 4 A 479 ARG ARG ARG PHE GLY ASP VAL PHE SER LEU GLN LEU ALA SEQRES 5 A 479 TRP THR PRO VAL VAL VAL LEU ASN GLY LEU ALA ALA VAL SEQRES 6 A 479 ARG GLU ALA LEU VAL THR HIS GLY GLU ASP THR ALA ASP SEQRES 7 A 479 ARG PRO PRO VAL PRO ILE THR GLN ILE LEU GLY PHE GLY SEQRES 8 A 479 PRO ARG SER GLN GLY VAL PHE LEU ALA ARG TYR GLY PRO SEQRES 9 A 479 ALA TRP ARG GLU GLN ARG ARG PHE SER VAL SER THR LEU SEQRES 10 A 479 ARG ASN LEU GLY LEU GLY LYS LYS SER LEU GLU GLN TRP SEQRES 11 A 479 VAL THR GLU GLU ALA ALA CYS LEU CYS ALA ALA PHE ALA SEQRES 12 A 479 ASN HIS SER GLY ARG PRO PHE ARG PRO ASN GLY LEU LEU SEQRES 13 A 479 ASP LYS ALA VAL SER ASN VAL ILE ALA SER LEU THR CYS SEQRES 14 A 479 GLY ARG ARG PHE GLU TYR ASP ASP PRO ARG PHE LEU ARG SEQRES 15 A 479 LEU LEU ASP LEU ALA GLN GLU GLY LEU LYS GLU GLU SER SEQRES 16 A 479 GLY PHE LEU ARG GLU VAL LEU ASN ALA VAL PRO VAL LEU SEQRES 17 A 479 LEU HIS ILE PRO ALA LEU ALA GLY LYS VAL LEU ARG PHE SEQRES 18 A 479 GLN LYS ALA PHE LEU THR GLN LEU ASP GLU LEU LEU THR SEQRES 19 A 479 GLU HIS ARG MET THR TRP ASP PRO ALA GLN PRO PRO ARG SEQRES 20 A 479 ASP LEU THR GLU ALA PHE LEU ALA GLU MET GLU LYS ALA SEQRES 21 A 479 LYS GLY ASN PRO GLU SER SER PHE ASN ASP GLU ASN LEU SEQRES 22 A 479 ARG ILE VAL VAL ALA ASP LEU PHE SER ALA GLY MET VAL SEQRES 23 A 479 THR THR SER THR THR LEU ALA TRP GLY LEU LEU LEU MET SEQRES 24 A 479 ILE LEU HIS PRO ASP VAL GLN ARG ARG VAL GLN GLN GLU SEQRES 25 A 479 ILE ASP ASP VAL ILE GLY GLN VAL ARG ARG PRO GLU MET SEQRES 26 A 479 GLY ASP GLN ALA HIS MET PRO TYR THR THR ALA VAL ILE SEQRES 27 A 479 HIS GLU VAL GLN ARG PHE GLY ASP ILE VAL PRO LEU GLY SEQRES 28 A 479 VAL THR HIS MET THR SER ARG ASP ILE GLU VAL GLN GLY SEQRES 29 A 479 PHE ARG ILE PRO LYS GLY THR THR LEU ILE THR ASN LEU SEQRES 30 A 479 SER SER VAL LEU LYS ASP GLU ALA VAL TRP GLU LYS PRO SEQRES 31 A 479 PHE ARG PHE HIS PRO GLU HIS PHE LEU ASP ALA GLN GLY SEQRES 32 A 479 HIS PHE VAL LYS PRO GLU ALA PHE LEU PRO PHE SER ALA SEQRES 33 A 479 GLY ARG ARG ALA CYS LEU GLY GLU PRO LEU ALA ARG MET SEQRES 34 A 479 GLU LEU PHE LEU PHE PHE THR SER LEU LEU GLN HIS PHE SEQRES 35 A 479 SER PHE SER VAL PRO THR GLY GLN PRO ARG PRO SER HIS SEQRES 36 A 479 HIS GLY VAL PHE ALA PHE LEU VAL SER PRO SER PRO TYR SEQRES 37 A 479 GLU LEU CYS ALA VAL PRO ARG HIS HIS HIS HIS SEQRES 1 B 479 MET ALA LYS LYS THR SER SER LYS GLY LYS LEU PRO PRO SEQRES 2 B 479 GLY PRO LEU PRO LEU PRO GLY LEU GLY ASN LEU LEU HIS SEQRES 3 B 479 VAL ASP PHE GLN ASN THR PRO TYR CYS PHE ASP GLN LEU SEQRES 4 B 479 ARG ARG ARG PHE GLY ASP VAL PHE SER LEU GLN LEU ALA SEQRES 5 B 479 TRP THR PRO VAL VAL VAL LEU ASN GLY LEU ALA ALA VAL SEQRES 6 B 479 ARG GLU ALA LEU VAL THR HIS GLY GLU ASP THR ALA ASP SEQRES 7 B 479 ARG PRO PRO VAL PRO ILE THR GLN ILE LEU GLY PHE GLY SEQRES 8 B 479 PRO ARG SER GLN GLY VAL PHE LEU ALA ARG TYR GLY PRO SEQRES 9 B 479 ALA TRP ARG GLU GLN ARG ARG PHE SER VAL SER THR LEU SEQRES 10 B 479 ARG ASN LEU GLY LEU GLY LYS LYS SER LEU GLU GLN TRP SEQRES 11 B 479 VAL THR GLU GLU ALA ALA CYS LEU CYS ALA ALA PHE ALA SEQRES 12 B 479 ASN HIS SER GLY ARG PRO PHE ARG PRO ASN GLY LEU LEU SEQRES 13 B 479 ASP LYS ALA VAL SER ASN VAL ILE ALA SER LEU THR CYS SEQRES 14 B 479 GLY ARG ARG PHE GLU TYR ASP ASP PRO ARG PHE LEU ARG SEQRES 15 B 479 LEU LEU ASP LEU ALA GLN GLU GLY LEU LYS GLU GLU SER SEQRES 16 B 479 GLY PHE LEU ARG GLU VAL LEU ASN ALA VAL PRO VAL LEU SEQRES 17 B 479 LEU HIS ILE PRO ALA LEU ALA GLY LYS VAL LEU ARG PHE SEQRES 18 B 479 GLN LYS ALA PHE LEU THR GLN LEU ASP GLU LEU LEU THR SEQRES 19 B 479 GLU HIS ARG MET THR TRP ASP PRO ALA GLN PRO PRO ARG SEQRES 20 B 479 ASP LEU THR GLU ALA PHE LEU ALA GLU MET GLU LYS ALA SEQRES 21 B 479 LYS GLY ASN PRO GLU SER SER PHE ASN ASP GLU ASN LEU SEQRES 22 B 479 ARG ILE VAL VAL ALA ASP LEU PHE SER ALA GLY MET VAL SEQRES 23 B 479 THR THR SER THR THR LEU ALA TRP GLY LEU LEU LEU MET SEQRES 24 B 479 ILE LEU HIS PRO ASP VAL GLN ARG ARG VAL GLN GLN GLU SEQRES 25 B 479 ILE ASP ASP VAL ILE GLY GLN VAL ARG ARG PRO GLU MET SEQRES 26 B 479 GLY ASP GLN ALA HIS MET PRO TYR THR THR ALA VAL ILE SEQRES 27 B 479 HIS GLU VAL GLN ARG PHE GLY ASP ILE VAL PRO LEU GLY SEQRES 28 B 479 VAL THR HIS MET THR SER ARG ASP ILE GLU VAL GLN GLY SEQRES 29 B 479 PHE ARG ILE PRO LYS GLY THR THR LEU ILE THR ASN LEU SEQRES 30 B 479 SER SER VAL LEU LYS ASP GLU ALA VAL TRP GLU LYS PRO SEQRES 31 B 479 PHE ARG PHE HIS PRO GLU HIS PHE LEU ASP ALA GLN GLY SEQRES 32 B 479 HIS PHE VAL LYS PRO GLU ALA PHE LEU PRO PHE SER ALA SEQRES 33 B 479 GLY ARG ARG ALA CYS LEU GLY GLU PRO LEU ALA ARG MET SEQRES 34 B 479 GLU LEU PHE LEU PHE PHE THR SER LEU LEU GLN HIS PHE SEQRES 35 B 479 SER PHE SER VAL PRO THR GLY GLN PRO ARG PRO SER HIS SEQRES 36 B 479 HIS GLY VAL PHE ALA PHE LEU VAL SER PRO SER PRO TYR SEQRES 37 B 479 GLU LEU CYS ALA VAL PRO ARG HIS HIS HIS HIS HET HEM A 601 43 HET AJN A 602 26 HET ZN A 603 1 HET ZN A 604 1 HET HEM B 601 43 HET AJN B 602 26 HET ZN B 603 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM AJN AJMALICINE HETNAM ZN ZINC ION HETSYN HEM HEME HETSYN AJN METHYL (19ALPHA)-19-METHYL-16,17-DIDEHYDRO-18- HETSYN 2 AJN OXAYOHIMBAN-16-CARBOXYLATE FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 AJN 2(C21 H24 N2 O3) FORMUL 5 ZN 3(ZN 2+) FORMUL 10 HOH *68(H2 O) HELIX 1 AA1 ASN A 53 GLY A 66 1 14 HELIX 2 AA2 GLY A 83 VAL A 92 1 10 HELIX 3 AA3 HIS A 94 ALA A 99 5 6 HELIX 4 AA4 VAL A 104 GLY A 111 5 8 HELIX 5 AA5 GLY A 125 GLY A 143 1 19 HELIX 6 AA6 LYS A 146 ASN A 166 1 21 HELIX 7 AA7 PRO A 174 GLY A 192 1 19 HELIX 8 AA8 ASP A 199 GLU A 215 1 17 HELIX 9 AA9 GLY A 218 VAL A 227 1 10 HELIX 10 AB1 PRO A 228 HIS A 232 5 5 HELIX 11 AB2 ILE A 233 LEU A 241 1 9 HELIX 12 AB3 LEU A 241 TRP A 262 1 22 HELIX 13 AB4 ASP A 270 ALA A 282 1 13 HELIX 14 AB5 ASN A 291 HIS A 324 1 34 HELIX 15 AB6 HIS A 324 ILE A 339 1 16 HELIX 16 AB7 GLU A 346 ALA A 351 1 6 HELIX 17 AB8 MET A 353 ASP A 368 1 16 HELIX 18 AB9 LEU A 399 LYS A 404 1 6 HELIX 19 AC1 HIS A 416 LEU A 421 5 6 HELIX 20 AC2 GLY A 445 HIS A 463 1 19 HELIX 21 AC3 ASN B 53 GLY B 66 1 14 HELIX 22 AC4 GLY B 83 VAL B 92 1 10 HELIX 23 AC5 VAL B 104 ILE B 109 5 6 HELIX 24 AC6 GLY B 125 GLY B 143 1 19 HELIX 25 AC7 LYS B 146 ASN B 166 1 21 HELIX 26 AC8 PRO B 174 GLY B 192 1 19 HELIX 27 AC9 ASP B 199 GLU B 215 1 17 HELIX 28 AD1 GLY B 218 VAL B 227 1 10 HELIX 29 AD2 PRO B 228 HIS B 232 5 5 HELIX 30 AD3 ILE B 233 LEU B 241 1 9 HELIX 31 AD4 LEU B 241 TRP B 262 1 22 HELIX 32 AD5 ASP B 270 ALA B 282 1 13 HELIX 33 AD6 ASN B 291 HIS B 324 1 34 HELIX 34 AD7 HIS B 324 ILE B 339 1 16 HELIX 35 AD8 GLU B 346 HIS B 352 5 7 HELIX 36 AD9 MET B 353 ASP B 368 1 16 HELIX 37 AE1 LEU B 399 LYS B 404 1 6 HELIX 38 AE2 HIS B 416 LEU B 421 5 6 HELIX 39 AE3 GLY B 445 HIS B 463 1 19 SHEET 1 AA1 4 VAL A 68 LEU A 73 0 SHEET 2 AA1 4 THR A 76 ASN A 82 -1 O VAL A 80 N PHE A 69 SHEET 3 AA1 4 THR A 394 ASN A 398 1 O ASN A 398 N LEU A 81 SHEET 4 AA1 4 HIS A 376 MET A 377 -1 N HIS A 376 O LEU A 395 SHEET 1 AA2 2 ILE A 382 VAL A 384 0 SHEET 2 AA2 2 PHE A 387 ILE A 389 -1 O ILE A 389 N ILE A 382 SHEET 1 AA3 2 PHE A 464 SER A 467 0 SHEET 2 AA3 2 CYS A 493 PRO A 496 -1 O VAL A 495 N SER A 465 SHEET 1 AA4 2 GLY A 479 PHE A 481 0 SHEET 2 AA4 2 VAL A 485 PRO A 487 -1 O SER A 486 N VAL A 480 SHEET 1 AA5 4 VAL B 68 LEU B 73 0 SHEET 2 AA5 4 THR B 76 ASN B 82 -1 O VAL B 80 N PHE B 69 SHEET 3 AA5 4 THR B 394 ASN B 398 1 O ILE B 396 N LEU B 81 SHEET 4 AA5 4 HIS B 376 MET B 377 -1 N HIS B 376 O LEU B 395 SHEET 1 AA6 2 ILE B 382 VAL B 384 0 SHEET 2 AA6 2 PHE B 387 ILE B 389 -1 O ILE B 389 N ILE B 382 SHEET 1 AA7 2 PHE B 464 SER B 467 0 SHEET 2 AA7 2 CYS B 493 PRO B 496 -1 O VAL B 495 N SER B 465 LINK NE2 HIS A 258 ZN ZN A 603 1555 1555 2.09 LINK OD2 ASP A 270 ZN ZN A 603 1555 1555 2.30 LINK OE1 GLU A 273 ZN ZN A 603 1555 1555 2.20 LINK OE2 GLU A 287 ZN ZN A 603 1555 4454 1.94 LINK OD2 ASP A 422 ZN ZN A 604 1555 1555 2.38 LINK OD2 ASP A 422 ZN ZN A 604 1555 2555 2.38 LINK ND1 HIS A 426 ZN ZN A 604 1555 1555 2.14 LINK ND1 HIS A 426 ZN ZN A 604 1555 2555 2.14 LINK SG CYS A 443 FE HEM A 601 1555 1555 2.25 LINK NE2 HIS B 258 ZN ZN B 603 1555 1555 2.09 LINK OD2 ASP B 270 ZN ZN B 603 1555 1555 2.34 LINK OE2 GLU B 273 ZN ZN B 603 1555 1555 1.80 LINK OE2 GLU B 287 ZN ZN B 603 1555 4555 2.01 LINK SG CYS B 443 FE HEM B 601 1555 1555 2.25 SITE 1 AC1 20 ARG A 101 VAL A 119 PHE A 120 TRP A 128 SITE 2 AC1 20 ARG A 132 ALA A 305 GLY A 306 THR A 309 SITE 3 AC1 20 THR A 313 HIS A 376 LEU A 399 PRO A 435 SITE 4 AC1 20 PHE A 436 SER A 437 ARG A 441 CYS A 443 SITE 5 AC1 20 LEU A 444 LEU A 448 ALA A 449 HOH A 718 SITE 1 AC2 12 LEU A 110 PHE A 120 ALA A 209 GLY A 212 SITE 2 AC2 12 LEU A 213 GLU A 216 GLN A 244 PHE A 247 SITE 3 AC2 12 ASP A 301 SER A 304 ALA A 305 PHE A 483 SITE 1 AC3 4 HIS A 258 ASP A 270 GLU A 273 GLU A 287 SITE 1 AC4 2 ASP A 422 HIS A 426 SITE 1 AC5 18 ARG B 101 VAL B 119 PHE B 120 TRP B 128 SITE 2 AC5 18 ARG B 132 ALA B 305 GLY B 306 THR B 309 SITE 3 AC5 18 THR B 313 VAL B 374 HIS B 376 PRO B 435 SITE 4 AC5 18 PHE B 436 SER B 437 ARG B 441 CYS B 443 SITE 5 AC5 18 LEU B 444 GLY B 445 SITE 1 AC6 13 LEU B 110 PHE B 120 LEU B 121 ALA B 209 SITE 2 AC6 13 LEU B 213 GLU B 216 GLN B 244 PHE B 247 SITE 3 AC6 13 ALA B 300 ASP B 301 SER B 304 ALA B 305 SITE 4 AC6 13 PHE B 483 SITE 1 AC7 4 HIS B 258 ASP B 270 GLU B 273 GLU B 287 CRYST1 57.310 126.810 191.730 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005216 0.00000