HEADER ALLERGEN 17-OCT-14 4WP4 TITLE HEV B 6.02 (HEVEIN) EXTRACTED FROM SURGICAL GLOVES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRO-HEVEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 18-60; COMPND 5 SYNONYM: MAJOR HEVEIN; COMPND 6 OTHER_DETAILS: PROTEIN PURIFIED FROM RUBBER SURGICAL GLOVES THAT COMPND 7 UNDERWENT A VULCANIZATION PROCESS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEVEA BRASILIENSIS; SOURCE 3 ORGANISM_COMMON: PARA RUBBER TREE; SOURCE 4 ORGANISM_TAXID: 3981 KEYWDS ALLERGEN, HEVEA, LECTIN, RUBBER, SURGICAL GLOVES EXPDTA X-RAY DIFFRACTION AUTHOR C.GALICIA,A.RODRIGUEZ-ROMERO REVDAT 3 27-DEC-23 4WP4 1 REMARK REVDAT 2 08-JAN-20 4WP4 1 SOURCE JRNL REMARK REVDAT 1 04-MAR-15 4WP4 0 JRNL AUTH C.GALICIA,G.MENDOZA-HERNANDEZ,A.RODRIGUEZ-ROMERO JRNL TITL IMPACT OF THE VULCANIZATION PROCESS ON THE STRUCTURAL JRNL TITL 2 CHARACTERISTICS AND IGE RECOGNITION OF TWO ALLERGENS, HEV B JRNL TITL 3 2 AND HEV B 6.02, EXTRACTED FROM LATEX SURGICAL GLOVES. JRNL REF MOL.IMMUNOL. V. 65 250 2015 JRNL REFN ISSN 0161-5890 JRNL PMID 25700348 JRNL DOI 10.1016/J.MOLIMM.2015.01.018 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1810) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.880 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.9520 - 2.4510 1.00 1440 153 0.1604 0.1708 REMARK 3 2 2.4510 - 1.9460 1.00 1371 152 0.1550 0.1650 REMARK 3 3 1.9460 - 1.7000 0.99 1322 146 0.1330 0.1610 REMARK 3 4 1.7000 - 1.5440 0.98 1323 144 0.1310 0.1620 REMARK 3 5 1.5440 - 1.4340 0.97 1272 143 0.1400 0.1560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 344 REMARK 3 ANGLE : 1.457 467 REMARK 3 CHIRALITY : 0.056 42 REMARK 3 PLANARITY : 0.007 65 REMARK 3 DIHEDRAL : 16.900 129 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.5351 10.4764 11.9358 REMARK 3 T TENSOR REMARK 3 T11: 0.1346 T22: 0.1059 REMARK 3 T33: 0.1381 T12: 0.0128 REMARK 3 T13: -0.0013 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.7807 L22: 2.3024 REMARK 3 L33: 2.9011 L12: -1.0731 REMARK 3 L13: 0.3882 L23: -0.2634 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: -0.0593 S13: 0.0511 REMARK 3 S21: 0.0881 S22: 0.0113 S23: 0.1370 REMARK 3 S31: -0.0750 S32: -0.1904 S33: 0.0423 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA COLLECTION WAS DONE AT THE MAXIMUM REMARK 3 CRYSTAL-TO-DETECTOR DISTANCE OF 72 MM. AT THIS DISTANCE THE REMARK 3 RESOLUTION WAS 1.43 WITH AN I/SIGMA = 24.4 INDICATING THAT THE REMARK 3 CRYSTAL COULD HAVE DIFFRACTED TO A HIGHER RESOLUTION. HOWEVER, REMARK 3 THIS WAS NOT POSSIBLE WITH OUR MICROMAX007 (RIGAKU) REMARK 4 REMARK 4 4WP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13802 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 26.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 64.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 24.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 2M AMMONIUM REMARK 280 SULFATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.25900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.51800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.51800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.25900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 43 CG OD1 OD2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TOU A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q9B RELATED DB: PDB REMARK 900 1Q9B CONTAINS THE SAME PROTEIN FROM THE NON-PROCESSED NATURAL REMARK 900 SOURCE. DBREF 4WP4 A 1 43 UNP P02877 HEVE_HEVBR 18 60 SEQRES 1 A 43 GLU GLN CYS GLY ARG GLN ALA GLY GLY LYS LEU CYS PRO SEQRES 2 A 43 ASN ASN LEU CYS CYS SER GLN TRP GLY TRP CYS GLY SER SEQRES 3 A 43 THR ASP GLU TYR CYS SER PRO ASP HIS ASN CYS GLN SER SEQRES 4 A 43 ASN CYS LYS ASP HET TOU A 101 4 HETNAM TOU THIOUREA FORMUL 2 TOU C H4 N2 S FORMUL 3 HOH *53(H2 O) HELIX 1 AA1 GLY A 4 GLY A 8 5 5 HELIX 2 AA2 CYS A 12 LEU A 16 5 5 HELIX 3 AA3 THR A 27 SER A 32 1 6 HELIX 4 AA4 PRO A 33 ASN A 36 5 4 SHEET 1 AA1 2 CYS A 17 CYS A 18 0 SHEET 2 AA1 2 CYS A 24 GLY A 25 -1 O GLY A 25 N CYS A 17 SSBOND 1 CYS A 3 CYS A 18 1555 1555 2.08 SSBOND 2 CYS A 12 CYS A 24 1555 1555 2.08 SSBOND 3 CYS A 17 CYS A 31 1555 1555 2.08 SSBOND 4 CYS A 37 CYS A 41 1555 1555 2.01 SITE 1 AC1 3 SER A 39 ASN A 40 CYS A 41 CRYST1 37.330 37.330 48.777 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026788 0.015466 0.000000 0.00000 SCALE2 0.000000 0.030932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020501 0.00000