HEADER LYASE 17-OCT-14 4WP8 TITLE CRYSTAL STRUCTURE OF ADENYLYL CYCLASE MA1120 FROM MYCOBACTERIUM AVIUM TITLE 2 IN COMPLEX WITH 2'5'-DD-3'-ATP AND MANGANESE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MA1120; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 53-216; COMPND 5 SYNONYM: CYA1120,ADENYLYL CYCLASE; COMPND 6 EC: 4.6.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_TAXID: 1764; SOURCE 4 STRAIN: TN 104; SOURCE 5 GENE: CYA1120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPROEXHT KEYWDS ADENYLYL CYCLASE, 2'5'-DD-3'-ATP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.V.BARATHY,N.G.BHARAMBE,K.SUGUNA REVDAT 2 08-NOV-23 4WP8 1 JRNL REMARK LINK REVDAT 1 02-SEP-15 4WP8 0 JRNL AUTH D.V.BARATHY,N.G.BHARAMBE,W.SYED,A.ZAVERI,S.S.VISWESWARIAH, JRNL AUTH 2 M.COLA SIGMAF O,S.MISQUITH,K.SUGUNA JRNL TITL AUTOINHIBITORY MECHANISM AND ACTIVITY-RELATED STRUCTURAL JRNL TITL 2 CHANGES IN A MYCOBACTERIAL ADENYLYL CYCLASE JRNL REF J.STRUCT.BIOL. V. 190 304 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 25916753 JRNL DOI 10.1016/J.JSB.2015.04.013 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2533 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.95000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.031 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2624 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2500 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3566 ; 1.279 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5691 ; 0.680 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 5.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;29.345 ;22.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;11.799 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.339 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 402 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3002 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 615 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1352 ; 1.121 ; 2.057 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1351 ; 1.118 ; 2.056 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1693 ; 1.816 ; 3.069 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1694 ; 1.816 ; 3.070 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 1.686 ; 2.208 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1261 ; 1.685 ; 2.212 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1866 ; 2.686 ; 3.219 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3131 ; 5.357 ;17.211 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3006 ; 4.847 ;16.531 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95327 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 55.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4WP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM PHOSPHATE DIBASIC REMARK 280 DIHYDRATE, 20 % (W/V) POLYETHYLENE GLYCOL 3350, PH 9.1, REMARK 280 MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.98000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 135 REMARK 465 ARG A 136 REMARK 465 HIS A 137 REMARK 465 GLU A 138 REMARK 465 SER A 189 REMARK 465 ARG A 190 REMARK 465 SER A 191 REMARK 465 ASP A 192 REMARK 465 PHE B 47 REMARK 465 GLN B 48 REMARK 465 GLY B 49 REMARK 465 SER B 191 REMARK 465 ASP B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 75 CD NE CZ NH1 NH2 REMARK 470 ILE A 81 CD1 REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 115 OE2 REMARK 470 ARG A 119 NE CZ NH1 NH2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 134 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 ARG A 150 NH2 REMARK 470 ARG A 153 CD NE CZ NH1 NH2 REMARK 470 ARG A 154 CD NE CZ NH1 NH2 REMARK 470 ARG A 185 NE CZ NH1 NH2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 198 CB CG OD1 OD2 REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 217 CD1 CD2 REMARK 470 ARG B 54 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 113 CZ NH1 NH2 REMARK 470 GLU B 115 CD OE1 OE2 REMARK 470 ARG B 119 NH1 NH2 REMARK 470 ARG B 130 CZ NH1 NH2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 138 CD OE1 OE2 REMARK 470 ARG B 141 CZ NH1 NH2 REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 201 CG CD OE1 OE2 REMARK 470 LYS B 205 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 119.52 -160.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD1 REMARK 620 2 ILE A 62 O 92.4 REMARK 620 3 ASP A 105 OD2 91.9 88.7 REMARK 620 4 ZDA A 303 O2B 177.4 90.0 87.4 REMARK 620 5 ZDA A 303 O2A 89.5 176.2 87.9 88.0 REMARK 620 6 ZDA A 303 O3G 98.6 95.5 168.5 81.9 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD1 REMARK 620 2 ILE B 62 O 90.8 REMARK 620 3 ASP B 105 OD2 94.2 90.2 REMARK 620 4 ZDA B 302 O3G 97.5 91.2 168.2 REMARK 620 5 ZDA B 302 O3G 97.1 95.6 167.3 4.4 REMARK 620 6 ZDA B 302 O1B 173.7 86.7 80.1 88.3 88.9 REMARK 620 7 ZDA B 302 O1A 94.6 173.9 86.4 91.1 86.8 87.7 REMARK 620 8 ZDA B 302 O1A 93.8 174.2 93.0 84.7 80.4 89.1 6.6 REMARK 620 9 ZDA B 302 O1B 175.0 91.4 90.3 78.0 78.3 11.3 83.5 83.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZDA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZDA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4WP3 RELATED DB: PDB REMARK 900 RELATED ID: 4WP9 RELATED DB: PDB REMARK 900 RELATED ID: 4WPA RELATED DB: PDB DBREF 4WP8 A 54 217 UNP Q5UFR5 Q5UFR5_MYCAV 53 216 DBREF 4WP8 B 54 217 UNP Q5UFR5 Q5UFR5_MYCAV 53 216 SEQADV 4WP8 PHE A 47 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 GLN A 48 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 GLY A 49 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 ALA A 50 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 MET A 51 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 GLY A 52 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 SER A 53 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 PHE B 47 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 GLN B 48 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 GLY B 49 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 ALA B 50 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 MET B 51 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 GLY B 52 UNP Q5UFR5 EXPRESSION TAG SEQADV 4WP8 SER B 53 UNP Q5UFR5 EXPRESSION TAG SEQRES 1 A 171 PHE GLN GLY ALA MET GLY SER ARG VAL VAL ILE LEU PHE SEQRES 2 A 171 THR ASP ILE GLU GLU SER THR ALA LEU ASN GLU ARG ILE SEQRES 3 A 171 GLY ASP ARG ALA TRP VAL LYS LEU ILE SER SER HIS ASP SEQRES 4 A 171 LYS LEU VAL SER ASP LEU VAL ARG ARG GLN SER GLY HIS SEQRES 5 A 171 VAL VAL LYS SER GLN GLY ASP GLY PHE MET VAL ALA PHE SEQRES 6 A 171 ALA ARG PRO GLU GLN ALA VAL ARG CYS GLY ILE GLU LEU SEQRES 7 A 171 GLN ARG ALA LEU ARG ARG ASN ALA ASN ARG LYS ARG HIS SEQRES 8 A 171 GLU GLU ILE ARG VAL ARG ILE GLY ILE HIS MET GLY ARG SEQRES 9 A 171 SER VAL ARG ARG GLY ASP ASP LEU PHE GLY ARG ASN VAL SEQRES 10 A 171 ALA MET ALA ALA ARG VAL ALA ALA GLN ALA ALA GLY GLY SEQRES 11 A 171 GLU ILE LEU VAL SER GLN PRO VAL ARG ASP ALA LEU SER SEQRES 12 A 171 ARG SER ASP GLY ILE ARG PHE ASP ASP GLY ARG GLU VAL SEQRES 13 A 171 GLU LEU LYS GLY PHE SER GLY THR TYR ARG LEU PHE ALA SEQRES 14 A 171 VAL LEU SEQRES 1 B 171 PHE GLN GLY ALA MET GLY SER ARG VAL VAL ILE LEU PHE SEQRES 2 B 171 THR ASP ILE GLU GLU SER THR ALA LEU ASN GLU ARG ILE SEQRES 3 B 171 GLY ASP ARG ALA TRP VAL LYS LEU ILE SER SER HIS ASP SEQRES 4 B 171 LYS LEU VAL SER ASP LEU VAL ARG ARG GLN SER GLY HIS SEQRES 5 B 171 VAL VAL LYS SER GLN GLY ASP GLY PHE MET VAL ALA PHE SEQRES 6 B 171 ALA ARG PRO GLU GLN ALA VAL ARG CYS GLY ILE GLU LEU SEQRES 7 B 171 GLN ARG ALA LEU ARG ARG ASN ALA ASN ARG LYS ARG HIS SEQRES 8 B 171 GLU GLU ILE ARG VAL ARG ILE GLY ILE HIS MET GLY ARG SEQRES 9 B 171 SER VAL ARG ARG GLY ASP ASP LEU PHE GLY ARG ASN VAL SEQRES 10 B 171 ALA MET ALA ALA ARG VAL ALA ALA GLN ALA ALA GLY GLY SEQRES 11 B 171 GLU ILE LEU VAL SER GLN PRO VAL ARG ASP ALA LEU SER SEQRES 12 B 171 ARG SER ASP GLY ILE ARG PHE ASP ASP GLY ARG GLU VAL SEQRES 13 B 171 GLU LEU LYS GLY PHE SER GLY THR TYR ARG LEU PHE ALA SEQRES 14 B 171 VAL LEU HET MN A 301 1 HET CL A 302 1 HET ZDA A 303 29 HET MN B 301 1 HET ZDA B 302 58 HET CL B 303 1 HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETNAM ZDA 2',5'-DIDEOXYADENOSINE 3'-(TETRAHYDROGEN TRIPHOSPHATE) HETSYN ZDA 2',5'-DIDEOXYADENOSINE 3'-TRIPHOSPHATE FORMUL 3 MN 2(MN 2+) FORMUL 4 CL 2(CL 1-) FORMUL 5 ZDA 2(C10 H16 N5 O11 P3) FORMUL 9 HOH *261(H2 O) HELIX 1 AA1 GLU A 64 GLY A 73 1 10 HELIX 2 AA2 GLY A 73 GLN A 95 1 23 HELIX 3 AA3 ARG A 113 ASN A 133 1 21 HELIX 4 AA4 GLY A 160 ALA A 173 1 14 HELIX 5 AA5 GLN A 182 LEU A 188 1 7 HELIX 6 AA6 GLU B 64 GLY B 73 1 10 HELIX 7 AA7 GLY B 73 GLN B 95 1 23 HELIX 8 AA8 ARG B 113 ARG B 134 1 22 HELIX 9 AA9 GLY B 160 ALA B 173 1 14 HELIX 10 AB1 GLN B 182 LEU B 188 1 7 SHEET 1 AA1 5 HIS A 98 SER A 102 0 SHEET 2 AA1 5 PHE A 107 PHE A 111 -1 O ALA A 110 N HIS A 98 SHEET 3 AA1 5 SER A 53 ILE A 62 -1 N LEU A 58 O VAL A 109 SHEET 4 AA1 5 VAL A 142 ARG A 154 -1 O HIS A 147 N ILE A 57 SHEET 5 AA1 5 ASP A 157 PHE A 159 -1 O PHE A 159 N VAL A 152 SHEET 1 AA2 7 HIS A 98 SER A 102 0 SHEET 2 AA2 7 PHE A 107 PHE A 111 -1 O ALA A 110 N HIS A 98 SHEET 3 AA2 7 SER A 53 ILE A 62 -1 N LEU A 58 O VAL A 109 SHEET 4 AA2 7 VAL A 142 ARG A 154 -1 O HIS A 147 N ILE A 57 SHEET 5 AA2 7 ILE A 178 SER A 181 1 O LEU A 179 N ILE A 144 SHEET 6 AA2 7 TYR A 211 ALA A 215 -1 O PHE A 214 N VAL A 180 SHEET 7 AA2 7 ARG A 200 VAL A 202 -1 N VAL A 202 O TYR A 211 SHEET 1 AA3 5 HIS B 98 SER B 102 0 SHEET 2 AA3 5 PHE B 107 PHE B 111 -1 O ALA B 110 N HIS B 98 SHEET 3 AA3 5 SER B 53 ILE B 62 -1 N LEU B 58 O VAL B 109 SHEET 4 AA3 5 VAL B 142 ARG B 154 -1 O HIS B 147 N ILE B 57 SHEET 5 AA3 5 ASP B 157 PHE B 159 -1 O PHE B 159 N VAL B 152 SHEET 1 AA4 7 HIS B 98 SER B 102 0 SHEET 2 AA4 7 PHE B 107 PHE B 111 -1 O ALA B 110 N HIS B 98 SHEET 3 AA4 7 SER B 53 ILE B 62 -1 N LEU B 58 O VAL B 109 SHEET 4 AA4 7 VAL B 142 ARG B 154 -1 O HIS B 147 N ILE B 57 SHEET 5 AA4 7 ILE B 178 SER B 181 1 O LEU B 179 N ILE B 144 SHEET 6 AA4 7 TYR B 211 ALA B 215 -1 O PHE B 214 N VAL B 180 SHEET 7 AA4 7 ARG B 200 VAL B 202 -1 N VAL B 202 O TYR B 211 LINK OD1 ASP A 61 MN MN A 301 1555 1555 2.11 LINK O ILE A 62 MN MN A 301 1555 1555 2.17 LINK OD2 ASP A 105 MN MN A 301 1555 1555 2.13 LINK MN MN A 301 O2B ZDA A 303 1555 1555 2.15 LINK MN MN A 301 O2A ZDA A 303 1555 1555 2.16 LINK MN MN A 301 O3G ZDA A 303 1555 1555 2.13 LINK OD1 ASP B 61 MN MN B 301 1555 1555 2.19 LINK O ILE B 62 MN MN B 301 1555 1555 2.20 LINK OD2 ASP B 105 MN MN B 301 1555 1555 2.16 LINK MN MN B 301 O3GAZDA B 302 1555 1555 2.39 LINK MN MN B 301 O3GBZDA B 302 1555 1555 1.97 LINK MN MN B 301 O1BBZDA B 302 1555 1555 2.13 LINK MN MN B 301 O1AAZDA B 302 1555 1555 2.23 LINK MN MN B 301 O1ABZDA B 302 1555 1555 2.28 LINK MN MN B 301 O1BAZDA B 302 1555 1555 2.35 SITE 1 AC1 4 ASP A 61 ILE A 62 ASP A 105 ZDA A 303 SITE 1 AC2 3 ARG A 168 GLN A 172 LYS A 205 SITE 1 AC3 26 ASP A 61 ILE A 62 GLU A 63 GLU A 64 SITE 2 AC3 26 SER A 65 THR A 66 GLN A 103 GLY A 104 SITE 3 AC3 26 ASP A 105 ARG A 143 MN A 301 HOH A 401 SITE 4 AC3 26 HOH A 459 HOH A 470 HOH A 503 LYS B 101 SITE 5 AC3 26 GLN B 103 MET B 108 ASP B 157 LEU B 158 SITE 6 AC3 26 VAL B 163 ALA B 164 ALA B 167 ARG B 168 SITE 7 AC3 26 HOH B 412 HOH B 459 SITE 1 AC4 4 ASP B 61 ILE B 62 ASP B 105 ZDA B 302 SITE 1 AC5 28 LYS A 101 GLN A 103 MET A 108 ASP A 157 SITE 2 AC5 28 LEU A 158 VAL A 163 ALA A 164 ALA A 167 SITE 3 AC5 28 ARG A 168 LYS A 205 HOH A 468 ASP B 61 SITE 4 AC5 28 ILE B 62 GLU B 63 GLU B 64 SER B 65 SITE 5 AC5 28 THR B 66 GLN B 103 GLY B 104 ASP B 105 SITE 6 AC5 28 ARG B 143 MN B 301 HOH B 401 HOH B 403 SITE 7 AC5 28 HOH B 413 HOH B 419 HOH B 426 HOH B 463 SITE 1 AC6 3 HOH A 433 ASN B 133 ARG B 134 CRYST1 51.970 55.960 54.070 90.00 106.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019242 0.000000 0.005645 0.00000 SCALE2 0.000000 0.017870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019274 0.00000