HEADER OXIDOREDUCTASE 18-OCT-14 4WPG TITLE GROUP A STREPTOCOCCUS GACA IS AN ESSENTIAL DTDP-4-DEHYDRORHAMNOSE TITLE 2 REDUCTASE (RMLD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DTDP-4-DEHYDRORHAMNOSE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.133; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: GACA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEXHIS6 KEYWDS RMLD, DTDP-4-DEHYDRORHAMNOSE REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.VAN DER BEEK,Y.LE BRETON,A.T.FERENBACH,D.M.F.VAN AALTEN, AUTHOR 2 I.NAVRATILOVA,K.MCIVER,N.M.VAN SORGE,H.C.DORFMUELLER REVDAT 3 08-MAY-24 4WPG 1 REMARK REVDAT 2 27-JAN-16 4WPG 1 JRNL REVDAT 1 09-SEP-15 4WPG 0 JRNL AUTH S.L.VAN DER BEEK,Y.LE BRETON,A.T.FERENBACH,R.N.CHAPMAN, JRNL AUTH 2 D.M.VAN AALTEN,I.NAVRATILOVA,G.J.BOONS,K.S.MCIVER, JRNL AUTH 3 N.M.VAN SORGE,H.C.DORFMUELLER JRNL TITL GACA IS ESSENTIAL FOR GROUP A STREPTOCOCCUS AND DEFINES A JRNL TITL 2 NEW CLASS OF MONOMERIC DTDP-4-DEHYDRORHAMNOSE REDUCTASES JRNL TITL 3 (RMLD). JRNL REF MOL.MICROBIOL. V. 98 946 2015 JRNL REFN ESSN 1365-2958 JRNL PMID 26278404 JRNL DOI 10.1111/MMI.13169 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 102724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5445 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6940 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 385 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.29000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : -0.51000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.031 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2391 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2204 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3263 ; 2.073 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5064 ; 1.529 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;34.638 ;24.957 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 381 ;11.415 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;23.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.275 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2763 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 555 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1177 ; 1.479 ; 0.780 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1176 ; 1.446 ; 0.778 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1480 ; 1.713 ; 1.175 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1481 ; 1.740 ; 1.177 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 1.984 ; 0.975 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1211 ; 1.980 ; 0.970 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1778 ; 2.274 ; 1.395 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 11312 ; 2.364 ; 9.255 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10704 ; 2.227 ; 8.205 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4595 ;10.222 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 25 ;11.602 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4982 ; 6.647 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6884 -0.7174 0.3707 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0120 REMARK 3 T33: 0.0229 T12: -0.0046 REMARK 3 T13: -0.0079 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.5190 L22: 1.2158 REMARK 3 L33: 1.6379 L12: 0.0270 REMARK 3 L13: -0.0111 L23: -0.5609 REMARK 3 S TENSOR REMARK 3 S11: 0.0625 S12: -0.0613 S13: 0.0027 REMARK 3 S21: 0.0097 S22: -0.0020 S23: -0.0512 REMARK 3 S31: 0.1305 S32: 0.0273 S33: -0.0605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4WPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000204243. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108172 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, 12.5% W/V PEG 3350, 12.5% REMARK 280 V/V MPD, 0.02 M OF EACH CARBOXYLIC ACID (0.2 M SODIUM FORMATE, REMARK 280 0.2 M AMMONIUM ACETATE, 0.2 M TRISODIUM CITRATE, 0.2 M SODIUM REMARK 280 POTASSIUM L-TARTRATE, 0.2 M SODIUM OXAMATE) AND 0.1 M MES/ REMARK 280 IMIDAZOLE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 LYS A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 248 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 190 HD21 ASN A 212 1.32 REMARK 500 H ALA A 232 O HOH A 410 1.59 REMARK 500 O HOH A 732 O HOH A 861 1.67 REMARK 500 OE1 GLN A 113 O HOH A 401 1.94 REMARK 500 O HOH A 508 O HOH A 522 1.97 REMARK 500 O HOH A 522 O HOH A 790 1.99 REMARK 500 O2 PO4 A 303 O HOH A 834 2.03 REMARK 500 O HOH A 704 O HOH A 772 2.04 REMARK 500 O HOH A 506 O HOH A 513 2.05 REMARK 500 O HOH A 550 O HOH A 552 2.07 REMARK 500 O HOH A 425 O HOH A 529 2.12 REMARK 500 O HOH A 689 O HOH A 861 2.17 REMARK 500 O HOH A 674 O HOH A 799 2.18 REMARK 500 O HOH A 500 O HOH A 824 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 526 O HOH A 528 1545 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 21 CD GLU A 21 OE2 0.096 REMARK 500 GLU A 75 CG GLU A 75 CD 0.091 REMARK 500 GLU A 75 CD GLU A 75 OE1 0.144 REMARK 500 GLU A 139 CG GLU A 139 CD 0.126 REMARK 500 GLU A 139 CD GLU A 139 OE1 0.071 REMARK 500 LEU A 228 C LEU A 228 O 0.147 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A -1 CB - CG - CD1 ANGL. DEV. = -18.6 DEGREES REMARK 500 TYR A 17 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 22 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 GLU A 75 CB - CG - CD ANGL. DEV. = 18.0 DEGREES REMARK 500 GLU A 139 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 ARG A 184 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 -91.86 -145.40 REMARK 500 VAL A 79 -66.29 -93.42 REMARK 500 SER A 100 -158.39 -121.90 REMARK 500 ASP A 122 67.93 -156.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 720 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 802 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 840 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 841 DISTANCE = 8.44 ANGSTROMS REMARK 525 HOH A 847 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A 850 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 6.75 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 DBREF 4WPG A 1 284 UNP T0BV37 T0BV37_STRPY 1 284 SEQADV 4WPG GLY A -4 UNP T0BV37 EXPRESSION TAG SEQADV 4WPG PRO A -3 UNP T0BV37 EXPRESSION TAG SEQADV 4WPG LEU A -2 UNP T0BV37 EXPRESSION TAG SEQADV 4WPG LEU A -1 UNP T0BV37 EXPRESSION TAG SEQADV 4WPG GLU A 0 UNP T0BV37 EXPRESSION TAG SEQRES 1 A 289 GLY PRO LEU LEU GLU MET ILE LEU ILE THR GLY SER ASN SEQRES 2 A 289 GLY GLN LEU GLY THR GLU LEU ARG TYR LEU LEU ASP GLU SEQRES 3 A 289 ARG GLY VAL ASP TYR VAL ALA VAL ASP VAL ALA GLU MET SEQRES 4 A 289 ASP ILE THR ASN GLU ASP LYS VAL GLU ALA VAL PHE ALA SEQRES 5 A 289 GLN VAL LYS PRO THR LEU VAL TYR HIS CYS ALA ALA TYR SEQRES 6 A 289 THR ALA VAL ASP ALA ALA GLU ASP GLU GLY LYS ALA LEU SEQRES 7 A 289 ASN GLU ALA ILE ASN VAL THR GLY SER GLU ASN ILE ALA SEQRES 8 A 289 LYS ALA CYS GLY LYS TYR GLY ALA THR LEU VAL TYR ILE SEQRES 9 A 289 SER THR ASP TYR VAL PHE ASP GLY ASN LYS PRO VAL GLY SEQRES 10 A 289 GLN GLU TRP VAL GLU THR ASP HIS PRO ASP PRO LYS THR SEQRES 11 A 289 GLU TYR GLY ARG THR LYS ARG LEU GLY GLU LEU ALA VAL SEQRES 12 A 289 GLU ARG TYR ALA GLU HIS PHE TYR ILE ILE ARG THR ALA SEQRES 13 A 289 TRP VAL PHE GLY ASN TYR GLY LYS ASN PHE VAL PHE THR SEQRES 14 A 289 MET GLU GLN LEU ALA GLU ASN HIS SER ARG LEU THR VAL SEQRES 15 A 289 VAL ASN ASP GLN HIS GLY ARG PRO THR TRP THR ARG THR SEQRES 16 A 289 LEU ALA GLU PHE MET CYS TYR LEU THR GLU ASN GLN LYS SEQRES 17 A 289 ALA PHE GLY TYR TYR HIS LEU SER ASN ASP ALA LYS GLU SEQRES 18 A 289 ASP THR THR TRP TYR ASP PHE ALA LYS GLU ILE LEU LYS SEQRES 19 A 289 ASP LYS ALA VAL GLU VAL VAL PRO VAL ASP SER SER ALA SEQRES 20 A 289 PHE PRO ALA LYS ALA LYS ARG PRO LEU ASN SER THR MET SEQRES 21 A 289 ASN LEU ASP LYS ALA LYS ALA THR GLY PHE VAL ILE PRO SEQRES 22 A 289 THR TRP GLN GLU ALA LEU LYS ALA PHE TYR GLN GLN GLY SEQRES 23 A 289 LEU LYS LYS HET MPD A 301 22 HET MRD A 302 22 HET PO4 A 303 5 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM PO4 PHOSPHATE ION FORMUL 2 MPD C6 H14 O2 FORMUL 3 MRD C6 H14 O2 FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *468(H2 O) HELIX 1 AA1 GLY A 9 ARG A 22 1 14 HELIX 2 AA2 ASN A 38 LYS A 50 1 13 HELIX 3 AA3 ASP A 64 ASP A 68 5 5 HELIX 4 AA4 GLY A 70 VAL A 79 1 10 HELIX 5 AA5 VAL A 79 GLY A 93 1 15 HELIX 6 AA6 TYR A 103 PHE A 105 5 3 HELIX 7 AA7 THR A 125 ALA A 142 1 18 HELIX 8 AA8 ASN A 160 GLU A 170 1 11 HELIX 9 AA9 THR A 188 ASN A 201 1 14 HELIX 10 AB1 THR A 219 LEU A 228 1 10 HELIX 11 AB2 LEU A 257 THR A 263 1 7 HELIX 12 AB3 THR A 269 LEU A 282 1 14 SHEET 1 AA1 6 VAL A 27 VAL A 29 0 SHEET 2 AA1 6 ILE A 2 THR A 5 1 N ILE A 4 O VAL A 29 SHEET 3 AA1 6 LEU A 53 HIS A 56 1 O TYR A 55 N LEU A 3 SHEET 4 AA1 6 THR A 95 THR A 101 1 O VAL A 97 N VAL A 54 SHEET 5 AA1 6 PHE A 145 THR A 150 1 O ILE A 148 N SER A 100 SHEET 6 AA1 6 GLY A 206 HIS A 209 1 O TYR A 208 N ILE A 147 SHEET 1 AA2 2 VAL A 153 PHE A 154 0 SHEET 2 AA2 2 THR A 186 TRP A 187 1 O THR A 186 N PHE A 154 SHEET 1 AA3 2 ARG A 174 VAL A 178 0 SHEET 2 AA3 2 GLU A 234 VAL A 238 1 O VAL A 236 N LEU A 175 SITE 1 AC1 8 GLU A 0 LEU A 19 ARG A 22 TYR A 55 SITE 2 AC1 8 ARG A 174 CYS A 196 THR A 199 GLU A 200 SITE 1 AC2 7 GLU A 0 THR A 52 THR A 95 THR A 199 SITE 2 AC2 7 HOH A 432 HOH A 507 HOH A 571 SITE 1 AC3 3 TRP A 220 HOH A 527 HOH A 834 CRYST1 36.482 45.977 48.867 66.30 81.21 95.27 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027410 0.002528 -0.005856 0.00000 SCALE2 0.000000 0.021843 -0.010186 0.00000 SCALE3 0.000000 0.000000 0.022848 0.00000